Csa3G356080 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G356080
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Peptidyl-prolyl isomerase; contains IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)
Location	Chr3 : 18313947 .. 18314246 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGTATCATTATACTGTCAATGCAGGGATGTGAAGATTGAATACAAACAACTAAAAGAGAAAGTGAGGGAATACACCAAGAGAGATGCACAGTTTTACAGCAACATTTTAGCAAAAATGAACAAATTGAAGCATGTTGAGTCTGGTGTAGATTACAAAACCAAATAGCTAATTTCTCAATCTTATTCTATTCTAAAACGAACCCTTTTGGAAATAAGACATTGTAATTATAGGATTTTGCAGAAATCAGGTGGAAAGCAAGGGGCAGAACCAATGATCATTGATAGCAAAACTTAA

mRNA sequence

ATGCGTGTATCATTATACTGTCAATGCAGGGATGTGAAGATTGAATACAAACAACTAAAAGAGAAAGTGAGGGAATACACCAAGAGAGATGCACAGTTTTACAGCAACATTTTAGCAAAAATGAACAAATTGAAGCATGTTGAGTCTGGTAAATCAGGTGGAAAGCAAGGGGCAGAACCAATGATCATTGATAGCAAAACTTAA

Coding sequence (CDS)

ATGCGTGTATCATTATACTGTCAATGCAGGGATGTGAAGATTGAATACAAACAACTAAAAGAGAAAGTGAGGGAATACACCAAGAGAGATGCACAGTTTTACAGCAACATTTTAGCAAAAATGAACAAATTGAAGCATGTTGAGTCTGGTAAATCAGGTGGAAAGCAAGGGGCAGAACCAATGATCATTGATAGCAAAACTTAA

Protein sequence

MRVSLYCQCRDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSKT*

Homology

[Close]

BLAST of Csa3G356080 vs. Swiss-Prot
Match: FKB65_ARATH (Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.1e-08
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           ++VKIEYK+LKEKV+EY K+DA+FYSN+L+KM     +E  K G ++ A+ M ID+K
Sbjct: 527 KEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKM-----LEPHK-GTQKEAQAMSIDTK 577

[Close]

BLAST of Csa3G356080 vs. Swiss-Prot
Match: FKB70_WHEAT (70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.7e-06
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1


Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVES 50
           RDVK+ YK LKEK++E  K+DA+FYSN+ +KM K    ES
Sbjct: 518 RDVKLTYKTLKEKIKEINKKDAKFYSNMFSKMTKPSAEES 557

[Close]

BLAST of Csa3G356080 vs. TrEMBL
Match: A0A0A0LB26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G356080 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.6e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1  MRVSLYCQCRDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEP 60
          MRVSLYCQCRDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEP
Sbjct: 1  MRVSLYCQCRDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEP 60

Query: 61 MIIDSKT 68
          MIIDSKT
Sbjct: 61 MIIDSKT 67

[Close]

BLAST of Csa3G356080 vs. TrEMBL
Match: A0A0A0L633_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G172920 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 8.5e-16
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 1


Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           RDVKIEY+QL++KVREY KRDAQFY NI AKMNKL+H +S  SGGKQ A PM IDSK
Sbjct: 518 RDVKIEYRQLEDKVREYNKRDAQFYGNIFAKMNKLEHAKSANSGGKQEAVPMTIDSK 574

[Close]

BLAST of Csa3G356080 vs. TrEMBL
Match: A0A059B1A9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02629 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.8e-13
Identity = 39/57 (68.42%), Postives = 43/57 (75.44%), Query Frame = 1


Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           RDVK+EYK LKEKVREY KRDAQFY N+ AKMNKL+H  +   G K  A PM IDSK
Sbjct: 530 RDVKLEYKILKEKVREYNKRDAQFYGNMFAKMNKLEHSRTAGMGAKHEAAPMTIDSK 586

[Close]

BLAST of Csa3G356080 vs. TrEMBL
Match: A0A103Y0N7_CYNCS (Peptidyl-prolyl cis-trans isomerase, FKBP-type OS=Cynara cardunculus var. scolymus GN=Ccrd_021384 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-12
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1


Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           RDVK+EYK L+EKV+EY K+DA+FY NI AKMNKL+H++S     KQ A PM IDSK
Sbjct: 507 RDVKLEYKLLREKVKEYNKKDAEFYGNIFAKMNKLEHLDSANGARKQEAVPMTIDSK 563

[Close]

BLAST of Csa3G356080 vs. TrEMBL
Match: A0A067KJY6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13125 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-11
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           RDVK+EYK LKEKVREY K+DAQFYSNI +K++KL+  +S    GKQ   PM +DSK
Sbjct: 522 RDVKLEYKILKEKVREYNKKDAQFYSNIFSKISKLEQTKSANGTGKQDPMPMAVDSK 578

[Close]

BLAST of Csa3G356080 vs. TAIR10
Match: AT5G48570.1 (AT5G48570.1 FKBP-type peptidyl-prolyl cis-trans isomerase family protein)

HSP 1 Score: 57.4 bits (137), Expect = 4.0e-09
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           ++VKIEYK+LKEKV+EY K+DA+FYSN+L+KM     +E  K G ++ A+ M ID+K
Sbjct: 527 KEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKM-----LEPHK-GTQKEAQAMSIDTK 577

[Close]

BLAST of Csa3G356080 vs. NCBI nr
Match: gi|700202734|gb|KGN57867.1| (hypothetical protein Csa_3G356080 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 6.6e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1  MRVSLYCQCRDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEP 60
          MRVSLYCQCRDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEP
Sbjct: 1  MRVSLYCQCRDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEP 60

Query: 61 MIIDSKT 68
          MIIDSKT
Sbjct: 61 MIIDSKT 67

[Close]

BLAST of Csa3G356080 vs. NCBI nr
Match: gi|659077136|ref|XP_008439052.1| (PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 1


Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           RDVKIEY+QLKEKV+EY KRDAQFY NI AKMNKL+H +S  SGGKQ   PM IDSK
Sbjct: 518 RDVKIEYRQLKEKVKEYNKRDAQFYGNIFAKMNKLEHAKSANSGGKQEGVPMTIDSK 574

[Close]

BLAST of Csa3G356080 vs. NCBI nr
Match: gi|778679239|ref|XP_011651108.1| (PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 1


Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           RDVKIEY+QL++KVREY KRDAQFY NI AKMNKL+H +S  SGGKQ A PM IDSK
Sbjct: 518 RDVKIEYRQLEDKVREYNKRDAQFYGNIFAKMNKLEHAKSANSGGKQEAVPMTIDSK 574

[Close]

BLAST of Csa3G356080 vs. NCBI nr
Match: gi|702440658|ref|XP_010023594.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like isoform X2 [Eucalyptus grandis])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 39/57 (68.42%), Postives = 43/57 (75.44%), Query Frame = 1


Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           RDVK+EYK LKEKVREY KRDAQFY N+ AKMNKL+H  +   G K  A PM IDSK
Sbjct: 530 RDVKLEYKILKEKVREYNKRDAQFYGNMFAKMNKLEHSRTAGMGAKHEAAPMTIDSK 586

[Close]

BLAST of Csa3G356080 vs. NCBI nr
Match: gi|1009138800|ref|XP_015886778.1| (PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Ziziphus jujuba])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           RDVK+EYK LKEKVREY K+DA+FY NI AKMNKL+ V S  +  KQ A PM IDSK
Sbjct: 521 RDVKLEYKVLKEKVREYNKKDAKFYGNIFAKMNKLEQVRSANTAAKQDAVPMSIDSK 577

The following BLAST results are available for this feature:

BLAST of Csa3G356080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FKB65_ARATH	7.1e-08	54.39	Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=...	[more]
FKB70_WHEAT	6.7e-06	57.50	70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1	[more]

BLAST of Csa3G356080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB26_CUCSA	4.6e-30	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G356080 PE=4 SV=1	[more]
A0A0A0L633_CUCSA	8.5e-16	75.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G172920 PE=4 SV=1	[more]
A0A059B1A9_EUCGR	8.8e-13	68.42	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02629 PE=4 SV=1	[more]
A0A103Y0N7_CYNCS	1.1e-12	64.91	Peptidyl-prolyl cis-trans isomerase, FKBP-type OS=Cynara cardunculus var. scolym...	[more]
A0A067KJY6_JATCU	1.3e-11	63.16	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13125 PE=4 SV=1	[more]

BLAST of Csa3G356080 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48570.1	4.0e-09	54.39	FKBP-type peptidyl-prolyl cis-trans isomerase family protein	[more]

BLAST of Csa3G356080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202734\|gb\|KGN57867.1\|	6.6e-30	100.00	hypothetical protein Csa_3G356080 [Cucumis sativus]	[more]
gi\|659077136\|ref\|XP_008439052.1\|	1.2e-15	75.44	PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Cucumis melo]	[more]
gi\|778679239\|ref\|XP_011651108.1\|	1.2e-15	75.44	PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Cucumis sativus]	[more]
gi\|702440658\|ref\|XP_010023594.1\|	1.3e-12	68.42	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like isoform X2 [Eucalyptu...	[more]
gi\|1009138800\|ref\|XP_015886778.1\|	1.3e-12	68.42	PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023566	PPIase_FKBP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016853	isomerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G356080.1	Csa3G356080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023566	Peptidyl-prolyl cis-trans isomerase, FKBP-type	PANTHER	PTHR10516	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 10..64 score: 5.6
None	No IPR available	unknown	Coil	Coil	coord: 9..29 scor
None	No IPR available	PANTHER	PTHR10516:SF324	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP62	coord: 10..64 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G356080	Silver-seed gourd	carcuB0566
Csa3G356080	Silver-seed gourd	carcuB1002
Csa3G356080	Watermelon (97103) v2	cuwmbB220
Csa3G356080	Wax gourd	cuwgoB289
Csa3G356080	Cucumber (Gy14) v1	cgycuB290
Csa3G356080	Cucumber (Gy14) v1	cgycuB291
Csa3G356080	Cucurbita maxima (Rimu)	cmacuB322
Csa3G356080	Cucurbita maxima (Rimu)	cmacuB410
Csa3G356080	Cucurbita moschata (Rifu)	cmocuB311
Csa3G356080	Cucurbita moschata (Rifu)	cmocuB400
Csa3G356080	Melon (DHL92) v3.5.1	cumeB250
Csa3G356080	Watermelon (Charleston Gray)	cuwcgB235
Csa3G356080	Watermelon (97103) v1	cuwmB249
Csa3G356080	Cucurbita pepo (Zucchini)	cpecuB035
Csa3G356080	Cucurbita pepo (Zucchini)	cpecuB207
Csa3G356080	Bottle gourd (USVL1VR-Ls)	culsiB218
Csa3G356080	Cucumber (Gy14) v2	cgybcuB109
Csa3G356080	Cucumber (Gy14) v2	cgybcuB118
Csa3G356080	Melon (DHL92) v3.6.1	cumedB242