Csa3G346930 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G346930
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 18147456 .. 18148794 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGATGGTGATGGTGATGGTGATGGAGTTCGGGTAAAGAGGGCAACTGGAATGGGATTGAAACCACATACTCATACAATCCTTACGGAAGTAAATCATGAATTATCTTTGCCTCTTCATCTCCAACAAACAAGCTTGGAGTATAAGAACATGTATCTATTAACATTTTTTAGTTTTTTTTGGATGATTCGTTCAAATATCACTTAGACATTTTTTAGATTCATTGTAGTGGGTTTTACATTTTGTGATCATACTTAGACATTTGAAACTTATTTCTATTGTTGTTGGTTTTGAGAGTTTACATTTTTAGTTAGACTTTAGTTTTAAAGTTGTACTTGAGATTTATTCATTTTGATGTTCCTTTCCTAGATTTATATAGTTTGAAGGAAGGAGAAATAACTAGTTTTTTAGACTTTCTAACCGAGTTAACTATCTTTTATGTATTTAATTTTTTTTTGTTTATTTTGGTATGCCAAAATGGAAGTTAATATAGCACACGTACCTTGACACATTAGAGAATTATGGTTTGTTACATTTTGGCAAAGTATTAATTGTCAGAAATATTTTCATTTTTAATTTTTTTGTTGCAATGTTTGATATATTTTGTTATAGTCAGAAAATTCATTCTATATTTAAAAATTAATTTAGAAGTCTAATATATTAATAATAAATATGAAAAAAAACTAAAATTGTTTTGGCCACGTACATATATGTACTAATTTAGTGTGGGGAGAAATTTTCTTTACTCCGCCAAAATTTTTTTCGTTGGCAGAAATAGTTTCTCCCCACAAAGCAAAATGGACAGAAAGTTTATTTTTGCCGACGTAATGATGGTCGTGGACGAAAAGACTATTCTTTCGAAGTCTTTTTCGTTGCCATAAAGTATATTTTTGCCCACGTAATGATGATCGTGGCAAAAATAACTTTCAACCGACGTTCTTTTCGTGGCAAGAAAATATAGTTTTGCCAACGTGATGATGATCGTGGACTAGAAATATCTTTTTCTACCCACGATTTTAATTTGTGTGAGAATTTCTACCGATGCAACGTCAGAAACGTGGGTCAAGGAAAAGACGACAGTGTTTCAATCACGCAATATGTACACCAAAAAAAACATCAATAAAAGGTATGTTCACGTTTTTCTGTGTCAGACGAAAATTCTTGTAGTATAGAGTGAGGAAAGGATATTAAAATCCAACCTTGTTTTGGATTTAGGGTATTGTATGATGGAGAACTCGAACATGTGGGAAGCAAAGTAATTAGAGGACAAGTGGCGTATTTGTTCCACGTGTCCAAAGCCAACAAGAATGTCTCTTTCACAATTGGGTCGGTATAA

mRNA sequence

ATGGGTGATGGTGATGGTGATGGTGATGGAGTTCGGGTAAAGAGGGCAACTGGAATGGGATTGAAACCACATACTCATACAATCCTTACGGAAGTAAATCATGAATTATCTTTGCCTCTTCATCTCCAACAAACAAGCTTGGAGTATAAGAACATGGTATTGTATGATGGAGAACTCGAACATGTGGGAAGCAAAGTAATTAGAGGACAAGTGGCGTATTTGTTCCACGTGTCCAAAGCCAACAAGAATGTCTCTTTCACAATTGGGTCGGTATAA

Coding sequence (CDS)

ATGGGTGATGGTGATGGTGATGGTGATGGAGTTCGGGTAAAGAGGGCAACTGGAATGGGATTGAAACCACATACTCATACAATCCTTACGGAAGTAAATCATGAATTATCTTTGCCTCTTCATCTCCAACAAACAAGCTTGGAGTATAAGAACATGGTATTGTATGATGGAGAACTCGAACATGTGGGAAGCAAAGTAATTAGAGGACAAGTGGCGTATTTGTTCCACGTGTCCAAAGCCAACAAGAATGTCTCTTTCACAATTGGGTCGGTATAA

Protein sequence

MGDGDGDGDGVRVKRATGMGLKPHTHTILTEVNHELSLPLHLQQTSLEYKNMVLYDGELEHVGSKVIRGQVAYLFHVSKANKNVSFTIGSV*

Homology

[Close]

BLAST of Csa3G346930 vs. TrEMBL
Match: A0A0A0LCP8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346930 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 1  MGDGDGDGDGVRVKRATGMGLKPHTHTILTEVNHELSLPLHLQQTSLEYKNMVLYDGELE 60
          MGDGDGDGDGVRVKRATGMGLKPHTHTILTEVNHELSLPLHLQQTSLEYKNMVLYDGELE
Sbjct: 1  MGDGDGDGDGVRVKRATGMGLKPHTHTILTEVNHELSLPLHLQQTSLEYKNMVLYDGELE 60

Query: 61 HVGSKVIRGQVAYLFHVSKANKNVSFTIGSV 92
          HVGSKVIRGQVAYLFHVSKANKNVSFTIGSV
Sbjct: 61 HVGSKVIRGQVAYLFHVSKANKNVSFTIGSV 91

[Close]

BLAST of Csa3G346930 vs. NCBI nr
Match: gi|700202713|gb|KGN57846.1| (hypothetical protein Csa_3G346930 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 1.7e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 1  MGDGDGDGDGVRVKRATGMGLKPHTHTILTEVNHELSLPLHLQQTSLEYKNMVLYDGELE 60
          MGDGDGDGDGVRVKRATGMGLKPHTHTILTEVNHELSLPLHLQQTSLEYKNMVLYDGELE
Sbjct: 1  MGDGDGDGDGVRVKRATGMGLKPHTHTILTEVNHELSLPLHLQQTSLEYKNMVLYDGELE 60

Query: 61 HVGSKVIRGQVAYLFHVSKANKNVSFTIGSV 92
          HVGSKVIRGQVAYLFHVSKANKNVSFTIGSV
Sbjct: 61 HVGSKVIRGQVAYLFHVSKANKNVSFTIGSV 91

The following BLAST results are available for this feature:

BLAST of Csa3G346930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCP8_CUCSA	1.2e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346930 PE=4 SV=1	[more]

BLAST of Csa3G346930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202713\|gb\|KGN57846.1\|	1.7e-44	100.00	hypothetical protein Csa_3G346930 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G346930.1	Csa3G346930.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G346930	CSPI03G21880	Wild cucumber (PI 183967)	cpicuB120

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G346930	Cucurbita pepo (Zucchini)	cpecuB547
Csa3G346930	Cucumber (Gy14) v2	cgybcuB109
Csa3G346930	Melon (DHL92) v3.6.1	cumedB239
Csa3G346930	Silver-seed gourd	carcuB0780
Csa3G346930	Watermelon (97103) v2	cuwmbB218
Csa3G346930	Wax gourd	cuwgoB299
Csa3G346930	Cucumber (Gy14) v1	cgycuB290
Csa3G346930	Cucurbita maxima (Rimu)	cmacuB455
Csa3G346930	Cucurbita moschata (Rifu)	cmocuB442
Csa3G346930	Melon (DHL92) v3.5.1	cumeB246
Csa3G346930	Watermelon (Charleston Gray)	cuwcgB233
Csa3G346930	Watermelon (97103) v1	cuwmB245