Csa3G335350 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G335350
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 17867675 .. 17867884 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACACCTCTTTGCCTGATGCTGATTTTAAAGGTTTAGCCGAAGGGACTCAAGAAAGATCAACAAAAGAAATTTGGATCCTTAAAGAAAGAGGTAGAAGAAAGTCGAAGGTGGAGGAAGAAATCTTCGAGGAGTTTGAGAAAGGGGTTAAAAGAAACTACTTGTCGAAGGAGAAAGTGTCCAAATGCAAGAAGAGAAGAAGATAA

mRNA sequence

ATGAAGAACACCTCTTTGCCTGATGCTGATTTTAAAGGTTTAGCCGAAGGGACTCAAGAAAGATCAACAAAAGAAATTTGGATCCTTAAAGAAAGAGGTAGAAGAAAGTCGAAGGTGGAGGAAGAAATCTTCGAGGAGTTTGAGAAAGGGGTTAAAAGAAACTACTTGTCGAAGGAGAAAGTGTCCAAATGCAAGAAGAGAAGAAGATAA

Coding sequence (CDS)

ATGAAGAACACCTCTTTGCCTGATGCTGATTTTAAAGGTTTAGCCGAAGGGACTCAAGAAAGATCAACAAAAGAAATTTGGATCCTTAAAGAAAGAGGTAGAAGAAAGTCGAAGGTGGAGGAAGAAATCTTCGAGGAGTTTGAGAAAGGGGTTAAAAGAAACTACTTGTCGAAGGAGAAAGTGTCCAAATGCAAGAAGAGAAGAAGATAA

Protein sequence

MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRRKSKVEEEIFEEFEKGVKRNYLSKEKVSKCKKRRR*
Homology
[Close]
BLAST of Csa3G335350 vs. TrEMBL
Match: A0A0A0LA28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G335350 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 7.4e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRRKSKVEEEIFEEFEKGVKRNYLSKEK 60
          MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRRKSKVEEEIFEEFEKGVKRNYLSKEK
Sbjct: 1  MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRRKSKVEEEIFEEFEKGVKRNYLSKEK 60

Query: 61 VSKCKKRRR 70
          VSKCKKRRR
Sbjct: 61 VSKCKKRRR 69

[Close]
BLAST of Csa3G335350 vs. TrEMBL
Match: A0A0A0LTC4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173720 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.7e-08
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 1 

Query: 1  MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRR---KSKVEEEIFEEFEKGVKRNYLS 60
          M+ TS PDADF GLA  T  RSTKEI + + R +    ++KV +++ EEFEK   RN LS
Sbjct: 1  MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 61 KEKVSKCKK 67
          +EKV  CKK
Sbjct: 61 EEKVPNCKK 69

[Close]
BLAST of Csa3G335350 vs. TrEMBL
Match: A0A0A0L1L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G255430 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.3e-07
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 1 

Query: 1   MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRR---KSKVEEEIFEEFEKGVKRNYLS 60
           ++NTSL + DFKGLA+ TQ   TKEIW L  R +    + KV EE  +EFEK   RN L 
Sbjct: 33  VENTSLLEVDFKGLAKRTQGSLTKEIWDLGRRNQEVELEIKVNEEATKEFEKERDRNNLL 92

Query: 61  KEKVSKCKKRRR 70
           +E+VS C K R+
Sbjct: 93  EEEVSICNKGRQ 104

[Close]
BLAST of Csa3G335350 vs. TrEMBL
Match: A0A0A0KPM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G057130 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-06
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1 

Query: 1  MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRR---KSKVEEEIFEEFEKGVKRNYLS 60
          M+NTSL + DFKGLA   QER  KEIW+   R      ++KVEEE  EEFEK   R+ LS
Sbjct: 1  MRNTSLLEDDFKGLATRIQERRVKEIWVCGRRSEEIELETKVEEEAAEEFEKESDRDTLS 60

[Close]
BLAST of Csa3G335350 vs. NCBI nr
Match: gi|700202696|gb|KGN57829.1| (hypothetical protein Csa_3G335350 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRRKSKVEEEIFEEFEKGVKRNYLSKEK 60
          MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRRKSKVEEEIFEEFEKGVKRNYLSKEK
Sbjct: 1  MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRRKSKVEEEIFEEFEKGVKRNYLSKEK 60

Query: 61 VSKCKKRRR 70
          VSKCKKRRR
Sbjct: 61 VSKCKKRRR 69

[Close]
BLAST of Csa3G335350 vs. NCBI nr
Match: gi|700209907|gb|KGN65003.1| (hypothetical protein Csa_1G173720 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 9.6e-08
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 1 

Query: 1  MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRR---KSKVEEEIFEEFEKGVKRNYLS 60
          M+ TS PDADF GLA  T  RSTKEI + + R +    ++KV +++ EEFEK   RN LS
Sbjct: 1  MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 61 KEKVSKCKK 67
          +EKV  CKK
Sbjct: 61 EEKVPNCKK 69

[Close]
BLAST of Csa3G335350 vs. NCBI nr
Match: gi|700198843|gb|KGN54001.1| (hypothetical protein Csa_4G255430 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 6.2e-07
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 1 

Query: 1   MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRR---KSKVEEEIFEEFEKGVKRNYLS 60
           ++NTSL + DFKGLA+ TQ   TKEIW L  R +    + KV EE  +EFEK   RN L 
Sbjct: 33  VENTSLLEVDFKGLAKRTQGSLTKEIWDLGRRNQEVELEIKVNEEATKEFEKERDRNNLL 92

Query: 61  KEKVSKCKKRRR 70
           +E+VS C K R+
Sbjct: 93  EEEVSICNKGRQ 104

[Close]
BLAST of Csa3G335350 vs. NCBI nr
Match: gi|700194499|gb|KGN49676.1| (hypothetical protein Csa_5G057130 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 6.9e-06
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1 

Query: 1  MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRR---KSKVEEEIFEEFEKGVKRNYLS 60
          M+NTSL + DFKGLA   QER  KEIW+   R      ++KVEEE  EEFEK   R+ LS
Sbjct: 1  MRNTSLLEDDFKGLATRIQERRVKEIWVCGRRSEEIELETKVEEEAAEEFEKESDRDTLS 60

The following BLAST results are available for this feature:
BLAST of Csa3G335350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA28_CUCSA7.4e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G335350 PE=4 SV=1[more]
A0A0A0LTC4_CUCSA6.7e-0852.17Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173720 PE=4 SV=1[more]
A0A0A0L1L9_CUCSA4.3e-0750.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G255430 PE=4 SV=1[more]
A0A0A0KPM1_CUCSA4.8e-0650.79Uncharacterized protein OS=Cucumis sativus GN=Csa_5G057130 PE=4 SV=1[more]
BLAST of Csa3G335350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202696|gb|KGN57829.1|1.1e-30100.00hypothetical protein Csa_3G335350 [Cucumis sativus][more]
gi|700209907|gb|KGN65003.1|9.6e-0852.17hypothetical protein Csa_1G173720 [Cucumis sativus][more]
gi|700198843|gb|KGN54001.1|6.2e-0750.00hypothetical protein Csa_4G255430 [Cucumis sativus][more]
gi|700194499|gb|KGN49676.1|6.9e-0650.79hypothetical protein Csa_5G057130 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G335350.1Csa3G335350.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G335350Silver-seed gourdcarcuB0780
Csa3G335350Watermelon (97103) v2cuwmbB218
Csa3G335350Wax gourdcuwgoB271
Csa3G335350Wax gourdcuwgoB299
Csa3G335350Cucumber (Gy14) v1cgycuB290
Csa3G335350Cucurbita maxima (Rimu)cmacuB242
Csa3G335350Cucurbita maxima (Rimu)cmacuB455
Csa3G335350Cucurbita moschata (Rifu)cmocuB229
Csa3G335350Cucurbita moschata (Rifu)cmocuB442
Csa3G335350Melon (DHL92) v3.5.1cumeB246
Csa3G335350Watermelon (Charleston Gray)cuwcgB233
Csa3G335350Watermelon (97103) v1cuwmB245
Csa3G335350Cucurbita pepo (Zucchini)cpecuB547
Csa3G335350Cucurbita pepo (Zucchini)cpecuB600
Csa3G335350Bottle gourd (USVL1VR-Ls)culsiB212
Csa3G335350Cucumber (Gy14) v2cgybcuB109
Csa3G335350Melon (DHL92) v3.6.1cumedB239