Csa3G321320 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G321320
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionSCAR-like protein
LocationChr3 : 17714698 .. 17715003 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTTCACACCTCAAAAAACATGCCATCATCTGTATCTTTTCATTTGTTGAAAGGTTTGTTGCTGAGGTATTCCATGATTTATGCGAAGAGGTCATTTCAACAGCTGCAAGAGGCCATAGTCTTATGATTCAGGTGCAACAACTTGAGGAAGAGGTTCCTTCAATTGAGAAAGCATTTATGTCCCAGGCAAATCATACATCTTTCTTCACTGGTACAGGTTCGTCCATCACATATATTGTTATATTTTTGCCAACAATCATGGTCACAACATTGTTTATATTGATGGATTTGAACAATTAA

mRNA sequence

ATGGAGATTTCACACCTCAAAAAACATGCCATCATCTGTATCTTTTCATTTGTTGAAAGGTTTGTTGCTGAGGTATTCCATGATTTATGCGAAGAGGTCATTTCAACAGCTGCAAGAGGCCATAGTCTTATGATTCAGGTGCAACAACTTGAGGAAGAGGTTCCTTCAATTGAGAAAGCATTTATGTCCCAGGCAAATCATACATCTTTCTTCACTGGTACAGGTTCGTCCATCACATATATTGTTATATTTTTGCCAACAATCATGGTCACAACATTGTTTATATTGATGGATTTGAACAATTAA

Coding sequence (CDS)

ATGGAGATTTCACACCTCAAAAAACATGCCATCATCTGTATCTTTTCATTTGTTGAAAGGTTTGTTGCTGAGGTATTCCATGATTTATGCGAAGAGGTCATTTCAACAGCTGCAAGAGGCCATAGTCTTATGATTCAGGTGCAACAACTTGAGGAAGAGGTTCCTTCAATTGAGAAAGCATTTATGTCCCAGGCAAATCATACATCTTTCTTCACTGGTACAGGTTCGTCCATCACATATATTGTTATATTTTTGCCAACAATCATGGTCACAACATTGTTTATATTGATGGATTTGAACAATTAA

Protein sequence

MEISHLKKHAIICIFSFVERFVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSFFTGTGSSITYIVIFLPTIMVTTLFILMDLNN*
Homology
[Close]
BLAST of Csa3G321320 vs. Swiss-Prot
Match: SCAR2_ARATH (Protein SCAR2 OS=Arabidopsis thaliana GN=SCAR2 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.2e-12
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1 

Query: 21  FVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSFFTGTG 76
           F AE+FHDL EEV++TA+R H LM +VQQLE E PSIEKA + Q +H+ FF+  G
Sbjct: 53  FAAEMFHDLHEEVMATASRSHGLMARVQQLEAEFPSIEKALLCQTDHSPFFSNKG 107

[Close]
BLAST of Csa3G321320 vs. Swiss-Prot
Match: SCRL1_ORYSJ (SCAR-like protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0816900 PE=2 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-10
Identity = 27/50 (54.00%), Postives = 42/50 (84.00%), Query Frame = 1 

Query: 21  FVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSF 71
           F AE+FHDL E+V++TA+RGH LM++++QLE E P++EKA +SQ++H+++
Sbjct: 51  FAAEIFHDLHEDVMATASRGHGLMLRLRQLEAEFPAVEKAIISQSDHSNY 100

[Close]
BLAST of Csa3G321320 vs. Swiss-Prot
Match: SCAR4_ARATH (Protein SCAR4 OS=Arabidopsis thaliana GN=SCAR4 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-08
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 18  VERFVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSFFTGTG 76
           +  F AEVFH L E++++TAARGH L +++Q LE + PS+E   +SQ +H++FF   G
Sbjct: 50  LSEFAAEVFHCLHEQLMTTAARGHGLAMRLQHLEADFPSVEIPILSQTDHSTFFYEPG 107

[Close]
BLAST of Csa3G321320 vs. Swiss-Prot
Match: SCRL2_ORYSJ (SCAR-like protein 2 OS=Oryza sativa subsp. japonica GN=Os01g0208600 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1 

Query: 21  FVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSFFTGTGS 77
           F A+VFHDL E+VI+T+ARG  ++ +VQ +E  +PS+EKA  +Q +H  F    GS
Sbjct: 72  FAADVFHDLHEQVITTSARGRKVLTRVQNIEAALPSLEKAVKNQKSHIHFTYVPGS 127

[Close]
BLAST of Csa3G321320 vs. Swiss-Prot
Match: SCAR3_ARATH (Protein SCAR3 OS=Arabidopsis thaliana GN=SCAR3 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.1e-07
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1 

Query: 21  FVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSF-FTG 74
           F AE+FH + EEV++TA+R + L I++Q +E  VP +EKA ++Q  H  F +TG
Sbjct: 47  FAAEIFHGIQEEVMATASRSNQLKIRLQHIEATVPPLEKAMLAQTTHIHFAYTG 100

[Close]
BLAST of Csa3G321320 vs. TrEMBL
Match: A0A0A0LCM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G321320 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-48
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MEISHLKKHAIICIFSFVERFVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKA 60
           MEISHLKKHAIICIFSFVERFVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKA
Sbjct: 1   MEISHLKKHAIICIFSFVERFVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKA 60

Query: 61  FMSQANHTSFFTGTGSSITYIVIFLPTIMVTTLFILMDLNN 102
           FMSQANHTSFFTGTGSSITYIVIFLPTIMVTTLFILMDLNN
Sbjct: 61  FMSQANHTSFFTGTGSSITYIVIFLPTIMVTTLFILMDLNN 101

[Close]
BLAST of Csa3G321320 vs. TrEMBL
Match: A0A0A0L2T0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G315020 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-17
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 21  FVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSFFTGTG 76
           F AEVFHDL EEVIST+ARGHSLMI+VQQLE EVPSIEKAF+SQ NHTSFFT TG
Sbjct: 53  FAAEVFHDLHEEVISTSARGHSLMIRVQQLEAEVPSIEKAFLSQTNHTSFFTSTG 107

[Close]
BLAST of Csa3G321320 vs. TrEMBL
Match: A0A067F7J6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000435mg PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-14
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 

Query: 21  FVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSFFTGTG 76
           F AE+FHDL EEV++TAARGH LM++VQQLE E PSIEKAF+SQ NHTSFF+  G
Sbjct: 53  FAAEIFHDLHEEVMATAARGHGLMVRVQQLEAEFPSIEKAFLSQTNHTSFFSNAG 107

[Close]
BLAST of Csa3G321320 vs. TrEMBL
Match: A0A067F7D7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000435mg PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-14
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 

Query: 21  FVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSFFTGTG 76
           F AE+FHDL EEV++TAARGH LM++VQQLE E PSIEKAF+SQ NHTSFF+  G
Sbjct: 53  FAAEIFHDLHEEVMATAARGHGLMVRVQQLEAEFPSIEKAFLSQTNHTSFFSNAG 107

[Close]
BLAST of Csa3G321320 vs. TrEMBL
Match: V4SUS8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010899mg PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-14
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 

Query: 21  FVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSFFTGTG 76
           F AE+FHDL EEV++TAARGH LM++VQQLE E PSIEKAF+SQ NHTSFF+  G
Sbjct: 53  FAAEIFHDLHEEVMATAARGHGLMVRVQQLEAEFPSIEKAFLSQTNHTSFFSNAG 107

[Close]
BLAST of Csa3G321320 vs. TAIR10
Match: AT2G38440.1 (AT2G38440.1 SCAR homolog 2)

HSP 1 Score: 71.2 bits (173), Expect = 4.0e-13
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1 

Query: 21  FVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSFFTGTG 76
           F AE+FHDL EEV++TA+R H LM +VQQLE E PSIEKA + Q +H+ FF+  G
Sbjct: 53  FAAEMFHDLHEEVMATASRSHGLMARVQQLEAEFPSIEKALLCQTDHSPFFSNKG 107

[Close]
BLAST of Csa3G321320 vs. TAIR10
Match: AT5G01730.1 (AT5G01730.1 SCAR family protein 4)

HSP 1 Score: 60.1 bits (144), Expect = 9.3e-10
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 18  VERFVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSFFTGTG 76
           +  F AEVFH L E++++TAARGH L +++Q LE + PS+E   +SQ +H++FF   G
Sbjct: 50  LSEFAAEVFHCLHEQLMTTAARGHGLAMRLQHLEADFPSVEIPILSQTDHSTFFYEPG 107

[Close]
BLAST of Csa3G321320 vs. TAIR10
Match: AT1G29170.1 (AT1G29170.1 SCAR family protein)

HSP 1 Score: 54.3 bits (129), Expect = 5.1e-08
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1 

Query: 21  FVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSF-FTG 74
           F AE+FH + EEV++TA+R + L I++Q +E  VP +EKA ++Q  H  F +TG
Sbjct: 47  FAAEIFHGIQEEVMATASRSNQLKIRLQHIEATVPPLEKAMLAQTTHIHFAYTG 100

[Close]
BLAST of Csa3G321320 vs. TAIR10
Match: AT2G34150.2 (AT2G34150.2 SCAR family protein)

HSP 1 Score: 53.9 bits (128), Expect = 6.7e-08
Identity = 24/54 (44.44%), Postives = 38/54 (70.37%), Query Frame = 1 

Query: 21  FVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSF-FTG 74
           F AE+FH + EEV+ TA+R + L ++++Q+E +VP+I+K  ++Q NH  F +TG
Sbjct: 53  FAAEIFHGIQEEVMITASRSNKLKMRLKQIEAKVPTIQKTVLAQTNHIHFAYTG 106

[Close]
BLAST of Csa3G321320 vs. NCBI nr
Match: gi|700202688|gb|KGN57821.1| (hypothetical protein Csa_3G321320 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 1.6e-48
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MEISHLKKHAIICIFSFVERFVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKA 60
           MEISHLKKHAIICIFSFVERFVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKA
Sbjct: 1   MEISHLKKHAIICIFSFVERFVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKA 60

Query: 61  FMSQANHTSFFTGTGSSITYIVIFLPTIMVTTLFILMDLNN 102
           FMSQANHTSFFTGTGSSITYIVIFLPTIMVTTLFILMDLNN
Sbjct: 61  FMSQANHTSFFTGTGSSITYIVIFLPTIMVTTLFILMDLNN 101

[Close]
BLAST of Csa3G321320 vs. NCBI nr
Match: gi|659128525|ref|XP_008464247.1| (PREDICTED: protein SCAR2 isoform X1 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-17
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 21  FVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSFFTGTG 76
           F AEVFHDL EEVISTAARGHSLMI+VQQLE EVPSIEKAF+SQ NHTSFFT TG
Sbjct: 53  FAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHTSFFTSTG 107

[Close]
BLAST of Csa3G321320 vs. NCBI nr
Match: gi|659128527|ref|XP_008464248.1| (PREDICTED: protein SCAR2 isoform X2 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-17
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 21  FVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSFFTGTG 76
           F AEVFHDL EEVISTAARGHSLMI+VQQLE EVPSIEKAF+SQ NHTSFFT TG
Sbjct: 53  FAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHTSFFTSTG 107

[Close]
BLAST of Csa3G321320 vs. NCBI nr
Match: gi|449461789|ref|XP_004148624.1| (PREDICTED: protein SCAR2 isoform X2 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 4.3e-17
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 21  FVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSFFTGTG 76
           F AEVFHDL EEVIST+ARGHSLMI+VQQLE EVPSIEKAF+SQ NHTSFFT TG
Sbjct: 53  FAAEVFHDLHEEVISTSARGHSLMIRVQQLEAEVPSIEKAFLSQTNHTSFFTSTG 107

[Close]
BLAST of Csa3G321320 vs. NCBI nr
Match: gi|778693922|ref|XP_011653714.1| (PREDICTED: protein SCAR2 isoform X1 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 4.3e-17
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 21  FVAEVFHDLCEEVISTAARGHSLMIQVQQLEEEVPSIEKAFMSQANHTSFFTGTG 76
           F AEVFHDL EEVIST+ARGHSLMI+VQQLE EVPSIEKAF+SQ NHTSFFT TG
Sbjct: 53  FAAEVFHDLHEEVISTSARGHSLMIRVQQLEAEVPSIEKAFLSQTNHTSFFTSTG 107

The following BLAST results are available for this feature:
BLAST of Csa3G321320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SCAR2_ARATH7.2e-1260.00Protein SCAR2 OS=Arabidopsis thaliana GN=SCAR2 PE=1 SV=1[more]
SCRL1_ORYSJ1.4e-1054.00SCAR-like protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0816900 PE=2 SV=2[more]
SCAR4_ARATH1.7e-0846.55Protein SCAR4 OS=Arabidopsis thaliana GN=SCAR4 PE=1 SV=1[more]
SCRL2_ORYSJ1.1e-0748.21SCAR-like protein 2 OS=Oryza sativa subsp. japonica GN=Os01g0208600 PE=2 SV=1[more]
SCAR3_ARATH9.1e-0746.30Protein SCAR3 OS=Arabidopsis thaliana GN=SCAR3 PE=1 SV=1[more]
BLAST of Csa3G321320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCM5_CUCSA1.1e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G321320 PE=4 SV=1[more]
A0A0A0L2T0_CUCSA3.0e-1785.45Uncharacterized protein OS=Cucumis sativus GN=Csa_4G315020 PE=4 SV=1[more]
A0A067F7J6_CITSI1.4e-1472.73Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000435mg PE=4 SV=1[more]
A0A067F7D7_CITSI1.4e-1472.73Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000435mg PE=4 SV=1[more]
V4SUS8_9ROSI1.4e-1472.73Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010899mg PE=4 SV=1[more]
BLAST of Csa3G321320 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G38440.14.0e-1360.00 SCAR homolog 2[more]
AT5G01730.19.3e-1046.55 SCAR family protein 4[more]
AT1G29170.15.1e-0846.30 SCAR family protein[more]
AT2G34150.26.7e-0844.44 SCAR family protein[more]
BLAST of Csa3G321320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202688|gb|KGN57821.1|1.6e-48100.00hypothetical protein Csa_3G321320 [Cucumis sativus][more]
gi|659128525|ref|XP_008464247.1|1.9e-1787.27PREDICTED: protein SCAR2 isoform X1 [Cucumis melo][more]
gi|659128527|ref|XP_008464248.1|1.9e-1787.27PREDICTED: protein SCAR2 isoform X2 [Cucumis melo][more]
gi|449461789|ref|XP_004148624.1|4.3e-1785.45PREDICTED: protein SCAR2 isoform X2 [Cucumis sativus][more]
gi|778693922|ref|XP_011653714.1|4.3e-1785.45PREDICTED: protein SCAR2 isoform X1 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR028288SCAR/WAVE_fam
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
Vocabulary: Biological Process
TermDefinition
GO:0030036actin cytoskeleton organization
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016049 cell growth
biological_process GO:0007131 reciprocal meiotic recombination
biological_process GO:0010091 trichome branching
biological_process GO:0016337 single organismal cell-cell adhesion
biological_process GO:0048765 root hair cell differentiation
biological_process GO:0033044 regulation of chromosome organization
biological_process GO:0045595 regulation of cell differentiation
biological_process GO:0071555 cell wall organization
biological_process GO:0003002 regionalization
biological_process GO:0051127 positive regulation of actin nucleation
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0010014 meristem initiation
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0048449 floral organ formation
biological_process GO:0048589 developmental growth
biological_process GO:0006325 chromatin organization
biological_process GO:0030036 actin cytoskeleton organization
cellular_component GO:0005856 cytoskeleton
cellular_component GO:0005886 plasma membrane
cellular_component GO:0031209 SCAR complex
molecular_function GO:0003779 actin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G321320.1Csa3G321320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028288SCAR/WAVE familyPANTHERPTHR12902WASP-1coord: 21..75
score: 1.0
NoneNo IPR availablePANTHERPTHR12902:SF12PROTEIN SCAR2-RELATEDcoord: 21..75
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G321320Melon (DHL92) v3.6.1cumedB239
Csa3G321320Silver-seed gourdcarcuB0780
Csa3G321320Watermelon (97103) v2cuwmbB218
Csa3G321320Wax gourdcuwgoB271
Csa3G321320Wax gourdcuwgoB299
Csa3G321320Cucumber (Gy14) v1cgycuB290
Csa3G321320Cucurbita maxima (Rimu)cmacuB242
Csa3G321320Cucurbita maxima (Rimu)cmacuB455
Csa3G321320Cucurbita moschata (Rifu)cmocuB229
Csa3G321320Cucurbita moschata (Rifu)cmocuB442
Csa3G321320Melon (DHL92) v3.5.1cumeB246
Csa3G321320Watermelon (Charleston Gray)cuwcgB233
Csa3G321320Watermelon (97103) v1cuwmB245
Csa3G321320Cucurbita pepo (Zucchini)cpecuB547
Csa3G321320Cucurbita pepo (Zucchini)cpecuB600
Csa3G321320Bottle gourd (USVL1VR-Ls)culsiB212
Csa3G321320Cucumber (Gy14) v2cgybcuB109