Csa3G321310 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G321310
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein; contains IPR000916 (Bet v I domain), IPR023393 (START-like domain)
LocationChr3 : 17709605 .. 17709853 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAGATTGCTAAGATTGCTGAGAAGGTGCAGCTGAAGTCATCTGGGGAGAAATTCTTTGAGTTTTTCAAGAACAAAATGGACTATTTTCCTCGAATGTTCGCTGGAAACGTTGAGAGCTATAAGTTTGTGGAAGGAAATAGTTTCACTCATGGCAGTGTCTCCATCTGGAAATATGACATTGGTTTCGGTGAGATCCGTCTCTTGTTCTTCTTCTCCTTCTCTTCTTCTCTGCTCCACAACTAA

mRNA sequence

ATGGCTCAGATTGCTAAGATTGCTGAGAAGGTGCAGCTGAAGTCATCTGGGGAGAAATTCTTTGAGTTTTTCAAGAACAAAATGGACTATTTTCCTCGAATGTTCGCTGGAAACGTTGAGAGCTATAAGTTTGTGGAAGGAAATAGTTTCACTCATGGCAGTGTCTCCATCTGGAAATATGACATTGGTTTCGGTGAGATCCGTCTCTTGTTCTTCTTCTCCTTCTCTTCTTCTCTGCTCCACAACTAA

Coding sequence (CDS)

ATGGCTCAGATTGCTAAGATTGCTGAGAAGGTGCAGCTGAAGTCATCTGGGGAGAAATTCTTTGAGTTTTTCAAGAACAAAATGGACTATTTTCCTCGAATGTTCGCTGGAAACGTTGAGAGCTATAAGTTTGTGGAAGGAAATAGTTTCACTCATGGCAGTGTCTCCATCTGGAAATATGACATTGGTTTCGGTGAGATCCGTCTCTTGTTCTTCTTCTCCTTCTCTTCTTCTCTGCTCCACAACTAA

Protein sequence

MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVESYKFVEGNSFTHGSVSIWKYDIGFGEIRLLFFFSFSSSLLHN*
Homology
[Close]
BLAST of Csa3G321310 vs. TrEMBL
Match: A0A0A0L759_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G321310 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.3e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVESYKFVEGNSFTHGSVSIWKY 60
          MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVESYKFVEGNSFTHGSVSIWKY
Sbjct: 1  MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVESYKFVEGNSFTHGSVSIWKY 60

Query: 61 DIGFGEIRLLFFFSFSSSLLHN 83
          DIGFGEIRLLFFFSFSSSLLHN
Sbjct: 61 DIGFGEIRLLFFFSFSSSLLHN 82

[Close]
BLAST of Csa3G321310 vs. TrEMBL
Match: A0A0A0L7N6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G331330 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.5e-19
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 1 

Query: 1  MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVESYKFVEGNSFTHGSVSIWKY 60
          MAQIAKI+++VQLK  G+KF++FFKNKMD+ PR+F    ESYK VEGNS THGSVS WKY
Sbjct: 1  MAQIAKISDQVQLKCCGKKFYDFFKNKMDHLPRVFPQYFESYKLVEGNSLTHGSVSFWKY 60

Query: 61 DIGFG 66
          D GFG
Sbjct: 61 DFGFG 65

[Close]
BLAST of Csa3G321310 vs. TrEMBL
Match: A0A0A0L771_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G337350 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-12
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1 

Query: 1  MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVE-SYKFVEGNSFTHGSVSIWK 60
          MAQI  I+E+V+LK+ G+KF+ FF  KMD   +MF  N+  +Y+FVEGNSFTHG+V  WK
Sbjct: 1  MAQICSISEEVKLKACGQKFYHFFLTKMDVLNQMFPQNINCTYEFVEGNSFTHGTVIHWK 60

Query: 61 YDIGFG 66
          YD G G
Sbjct: 61 YDFGGG 66

[Close]
BLAST of Csa3G321310 vs. TrEMBL
Match: A0A0A0LA22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G331340 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-12
Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 1 

Query: 1  MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVESYKFVEGNSFTHGSVSIWKY 60
          MAQIAKI+E+VQLK SG KF++FF NKMD   +MF   V SYK +EGN F HGSV   KY
Sbjct: 15 MAQIAKISEQVQLKCSGHKFYDFFTNKMDSVIQMFPHIVTSYKILEGNGFAHGSVIHLKY 74

Query: 61 DIG 64
          +IG
Sbjct: 75 NIG 77

[Close]
BLAST of Csa3G321310 vs. TrEMBL
Match: A0A0A0L9D7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G219190 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-10
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 1 

Query: 1  MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVESYKFVEGNSFTHGSVSIWKY 60
          MAQIAKI+E++QLKSS  KF++FF NKMD   +MF     SYK +EGN F H SV   KY
Sbjct: 1  MAQIAKISEQLQLKSSAHKFYDFFTNKMDSLIQMFPHIFTSYKILEGNGFAHASVIHIKY 60

Query: 61 DIG 64
          +IG
Sbjct: 61 NIG 63

[Close]
BLAST of Csa3G321310 vs. NCBI nr
Match: gi|700202687|gb|KGN57820.1| (hypothetical protein Csa_3G321310 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 3.3e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVESYKFVEGNSFTHGSVSIWKY 60
          MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVESYKFVEGNSFTHGSVSIWKY
Sbjct: 1  MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVESYKFVEGNSFTHGSVSIWKY 60

Query: 61 DIGFGEIRLLFFFSFSSSLLHN 83
          DIGFGEIRLLFFFSFSSSLLHN
Sbjct: 61 DIGFGEIRLLFFFSFSSSLLHN 82

[Close]
BLAST of Csa3G321310 vs. NCBI nr
Match: gi|449456188|ref|XP_004145832.1| (PREDICTED: MLP-like protein 34 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVESYKFVEGNSFTHGSVSIWKY 60
          MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVESYKFVEGNSFTHGSVSIWKY
Sbjct: 1  MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVESYKFVEGNSFTHGSVSIWKY 60

Query: 61 DIGFG 66
          DIGFG
Sbjct: 61 DIGFG 65

[Close]
BLAST of Csa3G321310 vs. NCBI nr
Match: gi|659131188|ref|XP_008465556.1| (PREDICTED: MLP-like protein 28 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 6.4e-27
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 1 

Query: 1  MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVESYKFVEGNSFTHGSVSIWKY 60
          MAQIAKIAEKVQLKSSGEKFFEFFKNK DYFPRMF GN++SYKFVEGNSF+HGSVSIWKY
Sbjct: 1  MAQIAKIAEKVQLKSSGEKFFEFFKNKADYFPRMFPGNIKSYKFVEGNSFSHGSVSIWKY 60

Query: 61 DIGFG 66
          D+GFG
Sbjct: 61 DLGFG 65

[Close]
BLAST of Csa3G321310 vs. NCBI nr
Match: gi|449467379|ref|XP_004151401.1| (PREDICTED: MLP-like protein 28 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 6.4e-19
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 1 

Query: 1  MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVESYKFVEGNSFTHGSVSIWKY 60
          MAQIAKI+++VQLK  G+KF++FFKNKMD+ PR+F    ESYK VEGNS THGSVS WKY
Sbjct: 1  MAQIAKISDQVQLKCCGKKFYDFFKNKMDHLPRVFPQYFESYKLVEGNSLTHGSVSFWKY 60

Query: 61 DIGFG 66
          D GFG
Sbjct: 61 DFGFG 65

[Close]
BLAST of Csa3G321310 vs. NCBI nr
Match: gi|659114438|ref|XP_008457054.1| (PREDICTED: MLP-like protein 165 isoform X2 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 6.0e-17
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1 

Query: 1  MAQIAKIAEKVQLKSSGEKFFEFFKNKMDYFPRMFAGNVESYKFVEGNSFTHGSVSIWKY 60
          MAQIA+I+E+VQLK  G+KF++FF+NKMD+ P++F    ESYK VEGNS THG VSIWK 
Sbjct: 1  MAQIAEISEQVQLKCCGKKFYDFFENKMDHLPQLFPQYFESYKLVEGNSLTHGGVSIWKN 60

Query: 61 DIGFGEIRL 70
          + GFG I +
Sbjct: 61 NFGFGSIEV 69

The following BLAST results are available for this feature:
BLAST of Csa3G321310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L759_CUCSA2.3e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G321310 PE=4 SV=1[more]
A0A0A0L7N6_CUCSA4.5e-1970.77Uncharacterized protein OS=Cucumis sativus GN=Csa_3G331330 PE=4 SV=1[more]
A0A0A0L771_CUCSA1.1e-1257.58Uncharacterized protein OS=Cucumis sativus GN=Csa_3G337350 PE=4 SV=1[more]
A0A0A0LA22_CUCSA1.8e-1263.49Uncharacterized protein OS=Cucumis sativus GN=Csa_3G331340 PE=4 SV=1[more]
A0A0A0L9D7_CUCSA1.0e-1058.73Uncharacterized protein OS=Cucumis sativus GN=Csa_3G219190 PE=4 SV=1[more]
BLAST of Csa3G321310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202687|gb|KGN57820.1|3.3e-39100.00hypothetical protein Csa_3G321310 [Cucumis sativus][more]
gi|449456188|ref|XP_004145832.1|1.8e-29100.00PREDICTED: MLP-like protein 34 [Cucumis sativus][more]
gi|659131188|ref|XP_008465556.1|6.4e-2790.77PREDICTED: MLP-like protein 28 [Cucumis melo][more]
gi|449467379|ref|XP_004151401.1|6.4e-1970.77PREDICTED: MLP-like protein 28 [Cucumis sativus][more]
gi|659114438|ref|XP_008457054.1|6.0e-1762.32PREDICTED: MLP-like protein 165 isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000916Bet_v_I/MLP
IPR023393START-like_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0006952defense response
GO:0009607response to biotic stimulus
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response
biological_process GO:0009607 response to biotic stimulus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G321310.1Csa3G321310.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000916Bet v I/Major latex proteinPFAMPF00407Bet_v_1coord: 5..63
score: 3.
IPR023393START-like domainGENE3DG3DSA:3.30.530.20coord: 1..63
score: 6.
NoneNo IPR availableunknownSSF55961Bet v1-likecoord: 5..64
score: 1.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G321310Cla013183Watermelon (97103) v1cuwmB245
Csa3G321310MELO3C020271Melon (DHL92) v3.5.1cumeB246
Csa3G321310Bhi01G001517Wax gourdcuwgoB271
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G321310Watermelon (Charleston Gray)cuwcgB233
Csa3G321310Cucurbita pepo (Zucchini)cpecuB547
Csa3G321310Cucurbita pepo (Zucchini)cpecuB600
Csa3G321310Bottle gourd (USVL1VR-Ls)culsiB212
Csa3G321310Cucumber (Gy14) v2cgybcuB109
Csa3G321310Melon (DHL92) v3.6.1cumedB239
Csa3G321310Silver-seed gourdcarcuB0780
Csa3G321310Watermelon (97103) v2cuwmbB218
Csa3G321310Wax gourdcuwgoB299
Csa3G321310Cucumber (Gy14) v1cgycuB290
Csa3G321310Cucurbita maxima (Rimu)cmacuB242
Csa3G321310Cucurbita maxima (Rimu)cmacuB455
Csa3G321310Cucurbita moschata (Rifu)cmocuB229
Csa3G321310Cucurbita moschata (Rifu)cmocuB442