Csa3G280940 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G280940
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 16638392 .. 16638682 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAACTGACCCAAAAAATGAAGACCGACCAAAAGAATGAACAATCGACGCAAAAAACAGTTGAACCGACCCACAAGGTTGAACCGCGTCGAACTGGAGCCACTCGTGCCAAATCAGATGAAGTCGCACTAAGTTGCGCCGCAAGATGCCAAGTCGCGCCTTTCCTGATACTTGTTGACGTCATGCTGATGTCAACCTACTTCCAGACGTGTGCAAATTTTTTCTTTTCACTTTTTGTGCAGTTACGTAATTCCTCCCATTTTAGGCCTTCTTGTGGTCCATTTTGA

mRNA sequence

ATGGAAGAACTGACCCAAAAAATGAAGACCGACCAAAAGAATGAACAATCGACGCAAAAAACAGTTGAACCGACCCACAAGGTTGAACCGCGTCGAACTGGAGCCACTCGTGCCAAATCAGATGAAGTCGCACTAAGTTGCGCCGCAAGATGCCAATTACGTAATTCCTCCCATTTTAGGCCTTCTTGTGGTCCATTTTGA

Coding sequence (CDS)

ATGGAAGAACTGACCCAAAAAATGAAGACCGACCAAAAGAATGAACAATCGACGCAAAAAACAGTTGAACCGACCCACAAGGTTGAACCGCGTCGAACTGGAGCCACTCGTGCCAAATCAGATGAAGTCGCACTAAGTTGCGCCGCAAGATGCCAATTACGTAATTCCTCCCATTTTAGGCCTTCTTGTGGTCCATTTTGA

Protein sequence

MEELTQKMKTDQKNEQSTQKTVEPTHKVEPRRTGATRAKSDEVALSCAARCQLRNSSHFRPSCGPF*
Homology
[Close]
BLAST of Csa3G280940 vs. TrEMBL
Match: A0A0A0L6Z0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G280940 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.5e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 

Query: 1  MEELTQKMKTDQKNEQSTQKTVEPTHKVEPRRTGATRAKSDEVALSCAARCQLRNSSHFR 60
          MEELTQKMKTDQKNEQSTQKTVEPTHKVEPRRTGATRAKSDEVALSCAARCQLRNSSHFR
Sbjct: 1  MEELTQKMKTDQKNEQSTQKTVEPTHKVEPRRTGATRAKSDEVALSCAARCQLRNSSHFR 60

Query: 61 PSCGPF 67
          PSCGPF
Sbjct: 61 PSCGPF 66

[Close]
BLAST of Csa3G280940 vs. NCBI nr
Match: gi|700202622|gb|KGN57755.1| (hypothetical protein Csa_3G280940 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 5.0e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 

Query: 1  MEELTQKMKTDQKNEQSTQKTVEPTHKVEPRRTGATRAKSDEVALSCAARCQLRNSSHFR 60
          MEELTQKMKTDQKNEQSTQKTVEPTHKVEPRRTGATRAKSDEVALSCAARCQLRNSSHFR
Sbjct: 1  MEELTQKMKTDQKNEQSTQKTVEPTHKVEPRRTGATRAKSDEVALSCAARCQLRNSSHFR 60

Query: 61 PSCGPF 67
          PSCGPF
Sbjct: 61 PSCGPF 66

The following BLAST results are available for this feature:
BLAST of Csa3G280940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6Z0_CUCSA3.5e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G280940 PE=4 SV=1[more]
BLAST of Csa3G280940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202622|gb|KGN57755.1|5.0e-30100.00hypothetical protein Csa_3G280940 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G280940.1Csa3G280940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G280940Cucumber (Gy14) v2cgybcuB109
Csa3G280940Melon (DHL92) v3.6.1cumedB228
Csa3G280940Silver-seed gourdcarcuB0513
Csa3G280940Silver-seed gourdcarcuB0780
Csa3G280940Watermelon (97103) v2cuwmbB218
Csa3G280940Wax gourdcuwgoB271
Csa3G280940Cucumber (Gy14) v1cgycuB003
Csa3G280940Cucurbita maxima (Rimu)cmacuB242
Csa3G280940Cucurbita maxima (Rimu)cmacuB455
Csa3G280940Cucurbita moschata (Rifu)cmocuB229
Csa3G280940Cucurbita moschata (Rifu)cmocuB442
Csa3G280940Melon (DHL92) v3.5.1cumeB161
Csa3G280940Watermelon (Charleston Gray)cuwcgB233
Csa3G280940Watermelon (97103) v1cuwmB245
Csa3G280940Cucurbita pepo (Zucchini)cpecuB547
Csa3G280940Cucurbita pepo (Zucchini)cpecuB600
Csa3G280940Bottle gourd (USVL1VR-Ls)culsiB212