Csa3G263220 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G263220
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 16207191 .. 16207493 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAATAGAGCACTGCTTGGATGGATGAAGCATCCCAAGGACACCAAACCTTTCCCAACCAGGGTGGAAAAATTATGTCATAAGTACCTCCCTACTTTTGTGCGATACCCACAAATTGAAATGGGTGGGCGAGTTAATCTGGCGGGCCTTAATCGCTTAAGATCCATCCACTCCAATAAGGAAGGTCTTTGTCGCCAAAAGACACAAAAGCAAGGGGGATATGAACTTGAACAACAAGATGTTAATGAGTCCCCACATCATCCACCGTTGAAATTCGAAGAGGCAATTTTAAAACCATAA

mRNA sequence

ATGATAAATAGAGCACTGCTTGGATGGATGAAGCATCCCAAGGACACCAAACCTTTCCCAACCAGGGTGGAAAAATTATGTCATAAGTACCTCCCTACTTTTGTGCGATACCCACAAATTGAAATGGGTGGGCGAGTTAATCTGGCGGGCCTTAATCGCTTAAGATCCATCCACTCCAATAAGGAAGGTCTTTGTCGCCAAAAGACACAAAAGCAAGGGGGATATGAACTTGAACAACAAGATGTTAATGAGTCCCCACATCATCCACCGTTGAAATTCGAAGAGGCAATTTTAAAACCATAA

Coding sequence (CDS)

ATGATAAATAGAGCACTGCTTGGATGGATGAAGCATCCCAAGGACACCAAACCTTTCCCAACCAGGGTGGAAAAATTATGTCATAAGTACCTCCCTACTTTTGTGCGATACCCACAAATTGAAATGGGTGGGCGAGTTAATCTGGCGGGCCTTAATCGCTTAAGATCCATCCACTCCAATAAGGAAGGTCTTTGTCGCCAAAAGACACAAAAGCAAGGGGGATATGAACTTGAACAACAAGATGTTAATGAGTCCCCACATCATCCACCGTTGAAATTCGAAGAGGCAATTTTAAAACCATAA

Protein sequence

MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSNKEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP*
Homology
[Close]
BLAST of Csa3G263220 vs. TrEMBL
Match: A0A0A0L9R5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263220 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 5.8e-53
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60
           MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN
Sbjct: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60

Query: 61  KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP 101
           KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP
Sbjct: 61  KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP 100

[Close]
BLAST of Csa3G263220 vs. TrEMBL
Match: A0A0A0KXQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091900 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-06
Identity = 33/91 (36.26%), Postives = 45/91 (49.45%), Query Frame = 1 

Query: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60
           +IN AL  W ++PK  KPFP+ +EKLC KYLPT  RYPQ  M              I   
Sbjct: 143 IINGALFVWRRNPKGAKPFPSTMEKLCLKYLPTLARYPQTPM-------------VIEQG 202

Query: 61  KEGLCRQKTQKQGGYELEQQDVNESPHHPPL 92
            + + + +  + G     ++D NE    PPL
Sbjct: 203 SDMVLKTQPPRDG-----EEDANEESTPPPL 215

[Close]
BLAST of Csa3G263220 vs. NCBI nr
Match: gi|700202591|gb|KGN57724.1| (hypothetical protein Csa_3G263220 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 8.3e-53
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60
           MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN
Sbjct: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60

Query: 61  KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP 101
           KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP
Sbjct: 61  KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP 100

[Close]
BLAST of Csa3G263220 vs. NCBI nr
Match: gi|700198466|gb|KGN53624.1| (hypothetical protein Csa_4G091900 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-06
Identity = 33/91 (36.26%), Postives = 45/91 (49.45%), Query Frame = 1 

Query: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60
           +IN AL  W ++PK  KPFP+ +EKLC KYLPT  RYPQ  M              I   
Sbjct: 143 IINGALFVWRRNPKGAKPFPSTMEKLCLKYLPTLARYPQTPM-------------VIEQG 202

Query: 61  KEGLCRQKTQKQGGYELEQQDVNESPHHPPL 92
            + + + +  + G     ++D NE    PPL
Sbjct: 203 SDMVLKTQPPRDG-----EEDANEESTPPPL 215

The following BLAST results are available for this feature:
BLAST of Csa3G263220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9R5_CUCSA5.8e-53100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263220 PE=4 SV=1[more]
A0A0A0KXQ2_CUCSA3.1e-0636.26Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091900 PE=4 SV=1[more]
BLAST of Csa3G263220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202591|gb|KGN57724.1|8.3e-53100.00hypothetical protein Csa_3G263220 [Cucumis sativus][more]
gi|700198466|gb|KGN53624.1|4.5e-0636.26hypothetical protein Csa_4G091900 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G263220.1Csa3G263220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G263220Silver-seed gourdcarcuB0513
Csa3G263220Silver-seed gourdcarcuB0780
Csa3G263220Watermelon (97103) v2cuwmbB218
Csa3G263220Wax gourdcuwgoB271
Csa3G263220Cucumber (Gy14) v1cgycuB003
Csa3G263220Cucurbita maxima (Rimu)cmacuB242
Csa3G263220Cucurbita maxima (Rimu)cmacuB455
Csa3G263220Cucurbita moschata (Rifu)cmocuB229
Csa3G263220Cucurbita moschata (Rifu)cmocuB442
Csa3G263220Melon (DHL92) v3.5.1cumeB161
Csa3G263220Watermelon (Charleston Gray)cuwcgB233
Csa3G263220Watermelon (97103) v1cuwmB247
Csa3G263220Cucurbita pepo (Zucchini)cpecuB547
Csa3G263220Cucurbita pepo (Zucchini)cpecuB600
Csa3G263220Bottle gourd (USVL1VR-Ls)culsiB212
Csa3G263220Cucumber (Gy14) v2cgybcuB109
Csa3G263220Melon (DHL92) v3.6.1cumedB228