Csa3G254040 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G254040
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 15847963 .. 15848304 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCCTATTCCAAAGATCTCTACCAAGCCAAGCAAGTCCCACGATGAATTTGAGAAAGTCCGTTTCGAAATTACTATGTCAGAACAAGCCAAAGTCAATACTATGATCCATGATTCTGAAGGAACTAGTTCAAACCAAGGGGTTGAGACAGAGAAAAACAAAGGAAAAGAGGCACGAAGGCCATTGATGATTAATGGAATAGAAATCCAACTTTCTGAAAATAATATATATGCTCTGCTCCTAAGGGTCTATGAAGAAAAGAAGATAAGAGAAAAGGAAAAGAAAGAAAAAGAAGAAAAAGAAAAGGCACACAAAAAAGAGGGAAAAAGAACCAAATGA

mRNA sequence

ATGTTTCCTATTCCAAAGATCTCTACCAAGCCAAGCAAGTCCCACGATGAATTTGAGAAAGTCCGTTTCGAAATTACTATGTCAGAACAAGCCAAAGTCAATACTATGATCCATGATTCTGAAGGAACTAGTTCAAACCAAGGGGTTGAGACAGAGAAAAACAAAGGAAAAGAGGCACGAAGGCCATTGATGATTAATGGAATAGAAATCCAACTTTCTGAAAATAATATATATGCTCTGCTCCTAAGGGTCTATGAAGAAAAGAAGATAAGAGAAAAGGAAAAGAAAGAAAAAGAAGAAAAAGAAAAGGCACACAAAAAAGAGGGAAAAAGAACCAAATGA

Coding sequence (CDS)

ATGTTTCCTATTCCAAAGATCTCTACCAAGCCAAGCAAGTCCCACGATGAATTTGAGAAAGTCCGTTTCGAAATTACTATGTCAGAACAAGCCAAAGTCAATACTATGATCCATGATTCTGAAGGAACTAGTTCAAACCAAGGGGTTGAGACAGAGAAAAACAAAGGAAAAGAGGCACGAAGGCCATTGATGATTAATGGAATAGAAATCCAACTTTCTGAAAATAATATATATGCTCTGCTCCTAAGGGTCTATGAAGAAAAGAAGATAAGAGAAAAGGAAAAGAAAGAAAAAGAAGAAAAAGAAAAGGCACACAAAAAAGAGGGAAAAAGAACCAAATGA

Protein sequence

MFPIPKISTKPSKSHDEFEKVRFEITMSEQAKVNTMIHDSEGTSSNQGVETEKNKGKEARRPLMINGIEIQLSENNIYALLLRVYEEKKIREKEKKEKEEKEKAHKKEGKRTK*

Homology

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BLAST of Csa3G254040 vs. TrEMBL
Match: A0A0A0L7C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G254040 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 4.8e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1


Query: 1   MFPIPKISTKPSKSHDEFEKVRFEITMSEQAKVNTMIHDSEGTSSNQGVETEKNKGKEAR 60
           MFPIPKISTKPSKSHDEFEKVRFEITMSEQAKVNTMIHDSEGTSSNQGVETEKNKGKEAR
Sbjct: 1   MFPIPKISTKPSKSHDEFEKVRFEITMSEQAKVNTMIHDSEGTSSNQGVETEKNKGKEAR 60

Query: 61  RPLMINGIEIQLSENNIYALLLRVYEEKKIREKEKKEKEEKEKAHKKEGKRTK 114
           RPLMINGIEIQLSENNIYALLLRVYEEKKIREKEKKEKEEKEKAHKKEGKRTK
Sbjct: 61  RPLMINGIEIQLSENNIYALLLRVYEEKKIREKEKKEKEEKEKAHKKEGKRTK 113

[Close]

BLAST of Csa3G254040 vs. NCBI nr
Match: gi|700202565|gb|KGN57698.1| (hypothetical protein Csa_3G254040 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 6.9e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1


Query: 1   MFPIPKISTKPSKSHDEFEKVRFEITMSEQAKVNTMIHDSEGTSSNQGVETEKNKGKEAR 60
           MFPIPKISTKPSKSHDEFEKVRFEITMSEQAKVNTMIHDSEGTSSNQGVETEKNKGKEAR
Sbjct: 1   MFPIPKISTKPSKSHDEFEKVRFEITMSEQAKVNTMIHDSEGTSSNQGVETEKNKGKEAR 60

Query: 61  RPLMINGIEIQLSENNIYALLLRVYEEKKIREKEKKEKEEKEKAHKKEGKRTK 114
           RPLMINGIEIQLSENNIYALLLRVYEEKKIREKEKKEKEEKEKAHKKEGKRTK
Sbjct: 61  RPLMINGIEIQLSENNIYALLLRVYEEKKIREKEKKEKEEKEKAHKKEGKRTK 113

The following BLAST results are available for this feature:

BLAST of Csa3G254040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7C6_CUCSA	4.8e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G254040 PE=4 SV=1	[more]

BLAST of Csa3G254040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202565\|gb\|KGN57698.1\|	6.9e-56	100.00	hypothetical protein Csa_3G254040 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G254040.1	Csa3G254040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 82..111 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G254040	Watermelon (97103) v2	cuwmbB218
Csa3G254040	Wax gourd	cuwgoB291
Csa3G254040	Cucumber (Gy14) v1	cgycuB003
Csa3G254040	Cucurbita maxima (Rimu)	cmacuB242
Csa3G254040	Cucurbita moschata (Rifu)	cmocuB229
Csa3G254040	Melon (DHL92) v3.5.1	cumeB249
Csa3G254040	Watermelon (Charleston Gray)	cuwcgB233
Csa3G254040	Watermelon (97103) v1	cuwmB247
Csa3G254040	Cucurbita pepo (Zucchini)	cpecuB600
Csa3G254040	Bottle gourd (USVL1VR-Ls)	culsiB212
Csa3G254040	Cucumber (Gy14) v2	cgybcuB109
Csa3G254040	Melon (DHL92) v3.6.1	cumedB230
Csa3G254040	Silver-seed gourd	carcuB0513