Csa3G252470 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G252470
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 15715150 .. 15715988 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCACACCCCATCTCCCTTGCCGGGTATTGACTGTTACTTCCCCACACGAAGAAACCCGCGAAAGCAACACCCTCTCTCTCTCCCTCTCCCTCTCCCTCTCTTTCCATTGAAGCTTCCATCCTTTTCCCTTTTCTTCCCGTTTCCCAAATATCCTAATCCCCTCCCACCTCAAACAACTGCCGCTCAAGTCAAACCCCCACCTCTTTTTCAACTCCCACTTTTCCCTTTTTCCTTCATTTCATTCATCTTCCTCTTTTCACCCTCATCGCCCCCCTTCCAATTGCAATTCCAGGTATTCTTTCTTCTAATTCTTACTTTTTTTATCCTCTTATTTCAGCTATCAATCTCTCCTCCCTTTCTTTTACAACCGTTGAATGAATTATTGAAGATTCACCAAACTCTCTTGCGTTTTACCGATTTATTTTTTTGTGTAGTTCTAATTAGATCAATGCCCGTCTCTTTATGCGTGTTTGATGCTGATTTTTTTGTAATTAGTTTCCTGTCATTTGATTTTGAATTTTGTTCTCGTTGCCTTCCTGCTTAATCATTTTGGAATATTTTCAAGTTATGATGGTTGTACGCACATTTCAGGATTTCCCATATTATTCTTTTGTCTTCTCCAATCAACATAGCACTTCCATTGTTAATTAATGTTTTTCTCTCGATCTACCATGTTTGTTTCTCACTCTTTGAATAGATTGAGCTCTAACTTGACCTTTGTGGAATGGGTGTTATTCCTTTTTTTATGTGTCTGCAACATGAAAGTATCGATTTTTTTTACTTGGTTTTTTTAAGTAATGGCGAGTCATTGCTTAGTGGCAGCATGACGCCTGA

mRNA sequence

ATGACCCACACCCCATCTCCCTTGCCGGGTATTGACTGTTACTTCCCCACACGAAGAAACCCGCGAAAGCAACACCCTCTCTCTCTCCCTCTCCCTCTCCCTCTCTTTCCATTGAAGCTTCCATCCTTTTCCCTTTTCTTCCCGTTTCCCAAATATCCTAATCCCCTCCCACCTCAAACAACTGCCGCTCAAGTCAAACCCCCACCTCTTTTTCAACTCCCACTTTTCCCTTTTTCCTTCATTTCATTCATCTTCCTCTTTTCACCCTCATCGCCCCCCTTCCAATTGCAATTCCAGTGGCAGCATGACGCCTGA

Coding sequence (CDS)

ATGACCCACACCCCATCTCCCTTGCCGGGTATTGACTGTTACTTCCCCACACGAAGAAACCCGCGAAAGCAACACCCTCTCTCTCTCCCTCTCCCTCTCCCTCTCTTTCCATTGAAGCTTCCATCCTTTTCCCTTTTCTTCCCGTTTCCCAAATATCCTAATCCCCTCCCACCTCAAACAACTGCCGCTCAAGTCAAACCCCCACCTCTTTTTCAACTCCCACTTTTCCCTTTTTCCTTCATTTCATTCATCTTCCTCTTTTCACCCTCATCGCCCCCCTTCCAATTGCAATTCCAGTGGCAGCATGACGCCTGA

Protein sequence

MTHTPSPLPGIDCYFPTRRNPRKQHPLSLPLPLPLFPLKLPSFSLFFPFPKYPNPLPPQTTAAQVKPPPLFQLPLFPFSFISFIFLFSPSSPPFQLQFQWQHDA*
Homology
[Close]
BLAST of Csa3G252470 vs. TrEMBL
Match: A0A0A0L7C0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G252470 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.1e-57
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MTHTPSPLPGIDCYFPTRRNPRKQHPLSLPLPLPLFPLKLPSFSLFFPFPKYPNPLPPQT 60
           MTHTPSPLPGIDCYFPTRRNPRKQHPLSLPLPLPLFPLKLPSFSLFFPFPKYPNPLPPQT
Sbjct: 1   MTHTPSPLPGIDCYFPTRRNPRKQHPLSLPLPLPLFPLKLPSFSLFFPFPKYPNPLPPQT 60

Query: 61  TAAQVKPPPLFQLPLFPFSFISFIFLFSPSSPPFQLQFQWQHDA 105
           TAAQVKPPPLFQLPLFPFSFISFIFLFSPSSPPFQLQFQWQHDA
Sbjct: 61  TAAQVKPPPLFQLPLFPFSFISFIFLFSPSSPPFQLQFQWQHDA 104

[Close]
BLAST of Csa3G252470 vs. NCBI nr
Match: gi|700202555|gb|KGN57688.1| (hypothetical protein Csa_3G252470 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 4.4e-57
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MTHTPSPLPGIDCYFPTRRNPRKQHPLSLPLPLPLFPLKLPSFSLFFPFPKYPNPLPPQT 60
           MTHTPSPLPGIDCYFPTRRNPRKQHPLSLPLPLPLFPLKLPSFSLFFPFPKYPNPLPPQT
Sbjct: 1   MTHTPSPLPGIDCYFPTRRNPRKQHPLSLPLPLPLFPLKLPSFSLFFPFPKYPNPLPPQT 60

Query: 61  TAAQVKPPPLFQLPLFPFSFISFIFLFSPSSPPFQLQFQWQHDA 105
           TAAQVKPPPLFQLPLFPFSFISFIFLFSPSSPPFQLQFQWQHDA
Sbjct: 61  TAAQVKPPPLFQLPLFPFSFISFIFLFSPSSPPFQLQFQWQHDA 104

The following BLAST results are available for this feature:
BLAST of Csa3G252470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7C0_CUCSA3.1e-57100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G252470 PE=4 SV=1[more]
BLAST of Csa3G252470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202555|gb|KGN57688.1|4.4e-57100.00hypothetical protein Csa_3G252470 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU113649cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G252470.1Csa3G252470.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU113649CU113649transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G252470Wax gourdcuwgoB291
Csa3G252470Cucumber (Gy14) v1cgycuB003
Csa3G252470Cucurbita maxima (Rimu)cmacuB127
Csa3G252470Cucurbita maxima (Rimu)cmacuB242
Csa3G252470Cucurbita moschata (Rifu)cmocuB116
Csa3G252470Cucurbita moschata (Rifu)cmocuB229
Csa3G252470Melon (DHL92) v3.5.1cumeB249
Csa3G252470Watermelon (Charleston Gray)cuwcgB233
Csa3G252470Watermelon (97103) v1cuwmB247
Csa3G252470Cucurbita pepo (Zucchini)cpecuB600
Csa3G252470Cucurbita pepo (Zucchini)cpecuB673
Csa3G252470Bottle gourd (USVL1VR-Ls)culsiB212
Csa3G252470Cucumber (Gy14) v2cgybcuB109
Csa3G252470Melon (DHL92) v3.6.1cumedB230
Csa3G252470Silver-seed gourdcarcuB0513
Csa3G252470Silver-seed gourdcarcuB0520
Csa3G252470Watermelon (97103) v2cuwmbB218