Csa3G238150 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G238150
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionDof zinc finger protein; contains IPR003851 (Zinc finger, Dof-type)
LocationChr3 : 15296155 .. 15297288 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATCTGCAAGAATTAAAGCAAGAAATCAAGTAGTCTTTGCTCATCTCCTTCACAACTCTCTATAATGGATTCTGCTCACTGGCCTCAGGTATGGCTCAGTGAACCCTTCTCTGTTTCTCTAGTCTTTCTCTAAATGATCATTTCTTATAATCTGTGTTTGTGTTATTGTGATGAATATTGGGAGATGCAGGTTGAAGTTAAGAACATGGAATTAGAAGAAGAGGGTCTGAAGGCAGTTGTGGAAAGAAAAGCAAAAGCTAGGAAAGATCAAATATTGAACTGTCCAAGATGCAATTCCAACAACACAAAGTTCTGTTACTACAACAATTACAGTCTCTCACAGCCAAGATACTTCTGTAAGTCTTGTAGAAGATATTGGACAGCTGGTGGGTCTTTAAGGAACATTCCAGTTGGTGGGGCATCTAGGAAGAACAAGAGACCTTCAGCTAATTTTTCATTACCTCCTTCAAAGAACAATCAAAAGAATTATAATAATGATGGTGGTGACGATGATGATCAGGGCATTTCCCAATTAAATATCAATATTACTTCTTGTTCTTCAACTGCCACCACTACTAACACTGCTACTTCTTGTTGTTGGCTGTCATCTGATAATGATCATATGAATAATCAAATAATGCTGAGAAGTAATGGCATAATGTCTCAAAGGGAGCTCATTCCTTTTATTCCTATGCCTGCACCAGCTCCTCCACAGCCTACTGCTGTTGCTGCTTTGGAGGATTTCAAGCAACTTTCAACCATCATTTCTACTGATCAAAATGGAGCTAAATTGGGGGATGCTCCTGCATTTTGGAGTGGCATTTTTGGTGGAGGTTCATGGTGAAACTTCTCCGCACTAATAAGCTACAGGTGAATTTATAATATATGTTTGTAAATTTGGGGTGATTTTATATTCTCATTGCATTTTTATTACACAAACACACATAAATACCATCTGTTTAATTACTTTTCATTTCTTGGCTTAAGAATTGGGAGGGTAGAAGTATATAACCTGGTGAGTTTTAGAATCTAAATAGGGGTCATTTTGAAGATGTTAATGATCATAATGTGTGTGTTTTAATTAGTTTTCCCTCCCTTTTTTAGTACAGAAATGAAAACCAAAACAAACAAAA

mRNA sequence

ATGGATTCTGCTCACTGGCCTCAGGTTGAAGTTAAGAACATGGAATTAGAAGAAGAGGGTCTGAAGGCAGTTGTGGAAAGAAAAGCAAAAGCTAGGAAAGATCAAATATTGAACTGTCCAAGATGCAATTCCAACAACACAAAGTTCTGTTACTACAACAATTACAGTCTCTCACAGCCAAGATACTTCTGTAAGTCTTGTAGAAGATATTGGACAGCTGGTGGGTCTTTAAGGAACATTCCAGTTGGTGGGGCATCTAGGAAGAACAAGAGACCTTCAGCTAATTTTTCATTACCTCCTTCAAAGAACAATCAAAAGAATTATAATAATGATGGTGGTGACGATGATGATCAGGGCATTTCCCAATTAAATATCAATATTACTTCTTGTTCTTCAACTGCCACCACTACTAACACTGCTACTTCTTGTTGTTGGCTGTCATCTGATAATGATCATATGAATAATCAAATAATGCTGAGAAGTAATGGCATAATGTCTCAAAGGGAGCTCATTCCTTTTATTCCTATGCCTGCACCAGCTCCTCCACAGCCTACTGCTGTTGCTGCTTTGGAGGATTTCAAGCAACTTTCAACCATCATTTCTACTGATCAAAATGGAGCTAAATTGGGGGATGCTCCTGCATTTTGGAGTGGCATTTTTGGTGGAGGTTCATGGTGA

Coding sequence (CDS)

ATGGATTCTGCTCACTGGCCTCAGGTTGAAGTTAAGAACATGGAATTAGAAGAAGAGGGTCTGAAGGCAGTTGTGGAAAGAAAAGCAAAAGCTAGGAAAGATCAAATATTGAACTGTCCAAGATGCAATTCCAACAACACAAAGTTCTGTTACTACAACAATTACAGTCTCTCACAGCCAAGATACTTCTGTAAGTCTTGTAGAAGATATTGGACAGCTGGTGGGTCTTTAAGGAACATTCCAGTTGGTGGGGCATCTAGGAAGAACAAGAGACCTTCAGCTAATTTTTCATTACCTCCTTCAAAGAACAATCAAAAGAATTATAATAATGATGGTGGTGACGATGATGATCAGGGCATTTCCCAATTAAATATCAATATTACTTCTTGTTCTTCAACTGCCACCACTACTAACACTGCTACTTCTTGTTGTTGGCTGTCATCTGATAATGATCATATGAATAATCAAATAATGCTGAGAAGTAATGGCATAATGTCTCAAAGGGAGCTCATTCCTTTTATTCCTATGCCTGCACCAGCTCCTCCACAGCCTACTGCTGTTGCTGCTTTGGAGGATTTCAAGCAACTTTCAACCATCATTTCTACTGATCAAAATGGAGCTAAATTGGGGGATGCTCCTGCATTTTGGAGTGGCATTTTTGGTGGAGGTTCATGGTGA

Protein sequence

MDSAHWPQVEVKNMELEEEGLKAVVERKAKARKDQILNCPRCNSNNTKFCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANFSLPPSKNNQKNYNNDGGDDDDQGISQLNINITSCSSTATTTNTATSCCWLSSDNDHMNNQIMLRSNGIMSQRELIPFIPMPAPAPPQPTAVAALEDFKQLSTIISTDQNGAKLGDAPAFWSGIFGGGSW*
Homology
[Close]
BLAST of Csa3G238150 vs. Swiss-Prot
Match: DOF18_ARATH (Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 9.6e-33
Identity = 78/147 (53.06%), Postives = 88/147 (59.86%), Query Frame = 1 

Query: 1   MDSAHWPQ---VEVKNMELEEEGLK---------AVVERKAKARKDQILNCPRCNSNNTK 60
           MD+A WPQ   V+  N  +    LK           VERKA+  KDQ LNCPRCNS NTK
Sbjct: 1   MDTAKWPQEFVVKPMNEIVTNTCLKQQSNPPSPATPVERKARPEKDQALNCPRCNSLNTK 60

Query: 61  FCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSAN--FSLPPSKNNQK 120
           FCYYNNYSL+QPRYFCK CRRYWTAGGSLRNIPVGG  RKNKR S+N   S P S ++ K
Sbjct: 61  FCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGGVRKNKRSSSNSSSSSPSSSSSSK 120

Query: 121 NYNNDGGDDDDQGISQLNINITSCSST 134
                  +     +  LN  I   ++T
Sbjct: 121 KPLFANNNTPTPPLPHLNPKIGEAAAT 147

[Close]
BLAST of Csa3G238150 vs. Swiss-Prot
Match: DOF46_ARATH (Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-30
Identity = 68/113 (60.18%), Postives = 77/113 (68.14%), Query Frame = 1 

Query: 1   MDSAHWPQ-VEVKNME--------------LEEEGLKAVV-ERKAKARKDQILNCPRCNS 60
           MD+A WPQ + VK +E              L+ +   +V  ERKA+  KDQ +NCPRCNS
Sbjct: 1   MDTAQWPQEIVVKPLEEIVTNTCPKPQPQPLQPQQPPSVGGERKARPEKDQAVNCPRCNS 60

Query: 61  NNTKFCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANFS 98
            NTKFCYYNNYSL+QPRYFCK CRRYWT GGSLRNIPVGG SRKNKR  ++ S
Sbjct: 61  TNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSHSSSS 113

[Close]
BLAST of Csa3G238150 vs. Swiss-Prot
Match: DOF37_ARATH (Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 2.9e-29
Identity = 71/147 (48.30%), Postives = 86/147 (58.50%), Query Frame = 1 

Query: 30  KARKDQILNCPRCNSNNTKFCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKN 89
           KAR  + +NCPRCNS NTKFCYYNNYSL+QPRYFCK CRRYWT GGSLRN+PVGG+SRKN
Sbjct: 67  KARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKN 126

Query: 90  KRPSANFSLPPSKNNQKNYNNDGGDDDDQGISQLNINITSCSSTATTTNTATSCCWLSSD 149
           KR S   + P   +N K             +  LN  I   S     +N   +       
Sbjct: 127 KRSSTPLASP---SNPK-------------LPDLNPPILFSSQIPNKSNKDLNLLSFPVM 186

Query: 150 NDHMNNQI-MLRSNGIMSQRELIPFIP 176
            DH ++ + +LRSNG+ S R +  F+P
Sbjct: 187 QDHHHHALELLRSNGV-SSRGMNTFLP 196

[Close]
BLAST of Csa3G238150 vs. Swiss-Prot
Match: DOF25_ARATH (Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3)

HSP 1 Score: 126.3 bits (316), Expect = 4.2e-28
Identity = 57/74 (77.03%), Postives = 61/74 (82.43%), Query Frame = 1 

Query: 24  VVERKAKARKDQILNCPRCNSNNTKFCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVG 83
           V ERKA  R  + LNCPRCNS NTKFCYYNNYSL+QPRYFCK CRRYWT GGSLRN+PVG
Sbjct: 69  VAERKA--RPQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVG 128

Query: 84  GASRKNKRPSANFS 98
           G+SRKNKR S++ S
Sbjct: 129 GSSRKNKRSSSSSS 140

[Close]
BLAST of Csa3G238150 vs. Swiss-Prot
Match: DOF21_ARATH (Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 1.3e-26
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 

Query: 13  NMELEEEGLKAVVERKAKARKDQILNCPRCNSNNTKFCYYNNYSLSQPRYFCKSCRRYWT 72
           N ++EEE +K  V R     + Q  NCPRC S NTKFCYYNNYSLSQPRYFCKSCRRYWT
Sbjct: 27  NKKMEEE-MKKKVSRGELGGEAQ--NCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWT 86

Query: 73  AGGSLRNIPVGGASRKNKRPSANFSLPPSKNNQKNYNND 112
            GG+LRN+PVGG  R+NKR S++     + N   N++ D
Sbjct: 87  KGGTLRNVPVGGGCRRNKRSSSSAFSKNNNNKSINFHTD 122

[Close]
BLAST of Csa3G238150 vs. TrEMBL
Match: A0A0A0L9J3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238150 PE=4 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 5.3e-131
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1 

Query: 1   MDSAHWPQVEVKNMELEEEGLKAVVERKAKARKDQILNCPRCNSNNTKFCYYNNYSLSQP 60
           MDSAHWPQVEVKNMELEEEGLKAVVERKAKARKDQILNCPRCNSNNTKFCYYNNYSLSQP
Sbjct: 1   MDSAHWPQVEVKNMELEEEGLKAVVERKAKARKDQILNCPRCNSNNTKFCYYNNYSLSQP 60

Query: 61  RYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANFSLPPSKNNQKNYNNDGGDDDDQGI 120
           RYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANFSLPPSKNNQKNYNNDGGDDDDQGI
Sbjct: 61  RYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANFSLPPSKNNQKNYNNDGGDDDDQGI 120

Query: 121 SQLNINITSCSSTATTTNTATSCCWLSSDNDHMNNQIMLRSNGIMSQRELIPFIPMPAPA 180
           SQLNINITSCSSTATTTNTATSCCWLSSDNDHMNNQIMLRSNGIMSQRELIPFIPMPAPA
Sbjct: 121 SQLNINITSCSSTATTTNTATSCCWLSSDNDHMNNQIMLRSNGIMSQRELIPFIPMPAPA 180

Query: 181 PPQPTAVAALEDFKQLSTIISTDQNGAKLGDAPAFWSGIFGGGSW 226
           PPQPTAVAALEDFKQLSTIISTDQNGAKLGDAPAFWSGIFGGGSW
Sbjct: 181 PPQPTAVAALEDFKQLSTIISTDQNGAKLGDAPAFWSGIFGGGSW 225

[Close]
BLAST of Csa3G238150 vs. TrEMBL
Match: A0A0K8K5T8_CAJCA (Dof protein OS=Cajanus cajan GN=Dof8 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.6e-40
Identity = 123/304 (40.46%), Postives = 156/304 (51.32%), Query Frame = 1 

Query: 1   MDSAHWPQ-VEVKNME--LEEEGLKAVVERKAKARKDQILNCPRCNSNNTKFCYYNNYSL 60
           MD+AHWPQ + VK +E  +        VE+KA+ +K+Q LNCPRC+S NTKFCYYNNYSL
Sbjct: 1   MDTAHWPQEMVVKPIEDIVVTNTCPKGVEKKARPQKEQALNCPRCHSINTKFCYYNNYSL 60

Query: 61  SQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANFSLPPSK--------------- 120
           +QPRYFCK+CRRYWT GGSLRNIPVGG SRKNKR S++ S P +K               
Sbjct: 61  TQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSS-STPNNKKLNVPDLVISPPTLS 120

Query: 121 --NNQKNYNN--DGGD---------DDDQGISQL----------NINIT-----SCSSTA 180
              N KN NN   G D          D + IS+L          N N++     S SS+ 
Sbjct: 121 HTQNPKNNNNVHQGQDLNLAFPATVPDFRNISELVQQNNNNNSSNSNMSASVSASSSSST 180

Query: 181 TTTNTATSCCWLSSDNDHMNNQIMLRSNGIMSQRELIPFIPMPAPAPP------------ 226
           TTT TAT+   LS+        + L S    S   L  F+PMP PA P            
Sbjct: 181 TTTTTATTASHLSA--------MELLSGITSSSTGLNAFMPMPVPADPNSVYTCGFPLQD 240

[Close]
BLAST of Csa3G238150 vs. TrEMBL
Match: A0A067GDE5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023047mg PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.9e-38
Identity = 115/295 (38.98%), Postives = 151/295 (51.19%), Query Frame = 1 

Query: 1   MDSAHWPQ-VEVKNME------LEEEGLKAVVERKAKARKDQILNCPRCNSNNTKFCYYN 60
           MD+A WPQ + VK +E        +    A +ERKA+ +K+Q LNCPRCNS NTKFCYYN
Sbjct: 1   MDTAQWPQEIVVKPIEEIVTNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYN 60

Query: 61  NYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANF------SLPPSKNNQKN 120
           NYSL+QPRYFCK+CRRYWT GGSLRNIPVGG SRKNKR S++       + PPS +  +N
Sbjct: 61  NYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSSSKKLPDPATPPSHHPHQN 120

Query: 121 YN-NDGGDDDD-----------QGISQL----NINITS---CSSTATTTNTATSCCWLSS 180
              +D G+D +           +  S+L    NI+  S    SS+ TTT T TS   LS+
Sbjct: 121 PKIHDHGEDLNLSFPAATTQGYRSFSELVQLPNIDNKSQIPISSSTTTTTTTTSSQQLSA 180

Query: 181 DNDHMNNQIMLRSNGIMSQRELIPFIPMPAPAPP------------QPTAVAALED---- 226
                     L     +S R L  F+PMP P P             +PT   +L+     
Sbjct: 181 ----------LELLTGISSRGLNSFMPMPVPDPNAIYAPGFPMQDFKPTLNFSLDGLGSG 240

[Close]
BLAST of Csa3G238150 vs. TrEMBL
Match: A0A067GMW9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023047mg PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.9e-38
Identity = 115/295 (38.98%), Postives = 151/295 (51.19%), Query Frame = 1 

Query: 1   MDSAHWPQ-VEVKNME------LEEEGLKAVVERKAKARKDQILNCPRCNSNNTKFCYYN 60
           MD+A WPQ + VK +E        +    A +ERKA+ +K+Q LNCPRCNS NTKFCYYN
Sbjct: 1   MDTAQWPQEIVVKPIEEIVTNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYN 60

Query: 61  NYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANF------SLPPSKNNQKN 120
           NYSL+QPRYFCK+CRRYWT GGSLRNIPVGG SRKNKR S++       + PPS +  +N
Sbjct: 61  NYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSSSKKLPDPATPPSHHPHQN 120

Query: 121 YN-NDGGDDDD-----------QGISQL----NINITS---CSSTATTTNTATSCCWLSS 180
              +D G+D +           +  S+L    NI+  S    SS+ TTT T TS   LS+
Sbjct: 121 PKIHDHGEDLNLSFPAATTQGYRSFSELVQLPNIDNKSQIPISSSTTTTTTTTSSQQLSA 180

Query: 181 DNDHMNNQIMLRSNGIMSQRELIPFIPMPAPAPP------------QPTAVAALED---- 226
                     L     +S R L  F+PMP P P             +PT   +L+     
Sbjct: 181 ----------LELLTGISSRGLNSFMPMPVPDPNAIYAPGFPMQDFKPTLNFSLDGLGSG 240

[Close]
BLAST of Csa3G238150 vs. TrEMBL
Match: V4VIN3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021521mg PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.9e-38
Identity = 115/295 (38.98%), Postives = 151/295 (51.19%), Query Frame = 1 

Query: 1   MDSAHWPQ-VEVKNME------LEEEGLKAVVERKAKARKDQILNCPRCNSNNTKFCYYN 60
           MD+A WPQ + VK +E        +    A +ERKA+ +K+Q LNCPRCNS NTKFCYYN
Sbjct: 1   MDTAQWPQEIVVKPIEEIVTNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYN 60

Query: 61  NYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANF------SLPPSKNNQKN 120
           NYSL+QPRYFCK+CRRYWT GGSLRNIPVGG SRKNKR S++       + PPS +  +N
Sbjct: 61  NYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSSSKKLPDPATPPSHHPHQN 120

Query: 121 YN-NDGGDDDD-----------QGISQL----NINITS---CSSTATTTNTATSCCWLSS 180
              +D G+D +           +  S+L    NI+  S    SS+ TTT T TS   LS+
Sbjct: 121 PKIHDHGEDLNLSFPAATTQGYRSFSELVQLPNIDNKSQIPISSSTTTTTTTTSSQQLSA 180

Query: 181 DNDHMNNQIMLRSNGIMSQRELIPFIPMPAPAPP------------QPTAVAALED---- 226
                     L     +S R L  F+PMP P P             +PT   +L+     
Sbjct: 181 ----------LELLTGISSRGLNSFMPMPVPDPNTVYAPGFPMQDFKPTLNFSLDGLGSG 240

[Close]
BLAST of Csa3G238150 vs. TAIR10
Match: AT1G64620.1 (AT1G64620.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 141.7 bits (356), Expect = 5.4e-34
Identity = 78/147 (53.06%), Postives = 88/147 (59.86%), Query Frame = 1 

Query: 1   MDSAHWPQ---VEVKNMELEEEGLK---------AVVERKAKARKDQILNCPRCNSNNTK 60
           MD+A WPQ   V+  N  +    LK           VERKA+  KDQ LNCPRCNS NTK
Sbjct: 1   MDTAKWPQEFVVKPMNEIVTNTCLKQQSNPPSPATPVERKARPEKDQALNCPRCNSLNTK 60

Query: 61  FCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSAN--FSLPPSKNNQK 120
           FCYYNNYSL+QPRYFCK CRRYWTAGGSLRNIPVGG  RKNKR S+N   S P S ++ K
Sbjct: 61  FCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGGVRKNKRSSSNSSSSSPSSSSSSK 120

Query: 121 NYNNDGGDDDDQGISQLNINITSCSST 134
                  +     +  LN  I   ++T
Sbjct: 121 KPLFANNNTPTPPLPHLNPKIGEAAAT 147

[Close]
BLAST of Csa3G238150 vs. TAIR10
Match: AT4G24060.1 (AT4G24060.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 134.8 bits (338), Expect = 6.6e-32
Identity = 68/113 (60.18%), Postives = 77/113 (68.14%), Query Frame = 1 

Query: 1   MDSAHWPQ-VEVKNME--------------LEEEGLKAVV-ERKAKARKDQILNCPRCNS 60
           MD+A WPQ + VK +E              L+ +   +V  ERKA+  KDQ +NCPRCNS
Sbjct: 1   MDTAQWPQEIVVKPLEEIVTNTCPKPQPQPLQPQQPPSVGGERKARPEKDQAVNCPRCNS 60

Query: 61  NNTKFCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANFS 98
            NTKFCYYNNYSL+QPRYFCK CRRYWT GGSLRNIPVGG SRKNKR  ++ S
Sbjct: 61  TNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSHSSSS 113

[Close]
BLAST of Csa3G238150 vs. TAIR10
Match: AT2G46590.2 (AT2G46590.2 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-29
Identity = 57/74 (77.03%), Postives = 61/74 (82.43%), Query Frame = 1 

Query: 24  VVERKAKARKDQILNCPRCNSNNTKFCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVG 83
           V ERKA  R  + LNCPRCNS NTKFCYYNNYSL+QPRYFCK CRRYWT GGSLRN+PVG
Sbjct: 69  VAERKA--RPQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVG 128

Query: 84  GASRKNKRPSANFS 98
           G+SRKNKR S++ S
Sbjct: 129 GSSRKNKRSSSSSS 140

[Close]
BLAST of Csa3G238150 vs. TAIR10
Match: AT3G61850.4 (AT3G61850.4 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 124.8 bits (312), Expect = 6.8e-29
Identity = 53/70 (75.71%), Postives = 57/70 (81.43%), Query Frame = 1 

Query: 30  KARKDQILNCPRCNSNNTKFCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKN 89
           KAR  + +NCPRCNS NTKFCYYNNYSL+QPRYFCK CRRYWT GGSLRN+PVGG+SRKN
Sbjct: 67  KARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKN 126

Query: 90  KRPSANFSLP 100
           KR S   + P
Sbjct: 127 KRSSTPLASP 136

[Close]
BLAST of Csa3G238150 vs. TAIR10
Match: AT2G28510.1 (AT2G28510.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 121.3 bits (303), Expect = 7.5e-28
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 

Query: 13  NMELEEEGLKAVVERKAKARKDQILNCPRCNSNNTKFCYYNNYSLSQPRYFCKSCRRYWT 72
           N ++EEE +K  V R     + Q  NCPRC S NTKFCYYNNYSLSQPRYFCKSCRRYWT
Sbjct: 27  NKKMEEE-MKKKVSRGELGGEAQ--NCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWT 86

Query: 73  AGGSLRNIPVGGASRKNKRPSANFSLPPSKNNQKNYNND 112
            GG+LRN+PVGG  R+NKR S++     + N   N++ D
Sbjct: 87  KGGTLRNVPVGGGCRRNKRSSSSAFSKNNNNKSINFHTD 122

[Close]
BLAST of Csa3G238150 vs. NCBI nr
Match: gi|449457069|ref|XP_004146271.1| (PREDICTED: dof zinc finger protein DOF1.8-like [Cucumis sativus])

HSP 1 Score: 474.9 bits (1221), Expect = 7.6e-131
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1 

Query: 1   MDSAHWPQVEVKNMELEEEGLKAVVERKAKARKDQILNCPRCNSNNTKFCYYNNYSLSQP 60
           MDSAHWPQVEVKNMELEEEGLKAVVERKAKARKDQILNCPRCNSNNTKFCYYNNYSLSQP
Sbjct: 1   MDSAHWPQVEVKNMELEEEGLKAVVERKAKARKDQILNCPRCNSNNTKFCYYNNYSLSQP 60

Query: 61  RYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANFSLPPSKNNQKNYNNDGGDDDDQGI 120
           RYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANFSLPPSKNNQKNYNNDGGDDDDQGI
Sbjct: 61  RYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANFSLPPSKNNQKNYNNDGGDDDDQGI 120

Query: 121 SQLNINITSCSSTATTTNTATSCCWLSSDNDHMNNQIMLRSNGIMSQRELIPFIPMPAPA 180
           SQLNINITSCSSTATTTNTATSCCWLSSDNDHMNNQIMLRSNGIMSQRELIPFIPMPAPA
Sbjct: 121 SQLNINITSCSSTATTTNTATSCCWLSSDNDHMNNQIMLRSNGIMSQRELIPFIPMPAPA 180

Query: 181 PPQPTAVAALEDFKQLSTIISTDQNGAKLGDAPAFWSGIFGGGSW 226
           PPQPTAVAALEDFKQLSTIISTDQNGAKLGDAPAFWSGIFGGGSW
Sbjct: 181 PPQPTAVAALEDFKQLSTIISTDQNGAKLGDAPAFWSGIFGGGSW 225

[Close]
BLAST of Csa3G238150 vs. NCBI nr
Match: gi|659111946|ref|XP_008455989.1| (PREDICTED: dof zinc finger protein DOF1.8-like [Cucumis melo])

HSP 1 Score: 453.8 bits (1166), Expect = 1.8e-124
Identity = 218/228 (95.61%), Postives = 222/228 (97.37%), Query Frame = 1 

Query: 1   MDSAHWPQVEVKNMELEEE-GLKAVVERKAKARKDQILNCPRCNSNNTKFCYYNNYSLSQ 60
           MDSAHWPQVEVKNM+LEEE G+KAVVERKAKARKDQILNCPRCNSNNTKFCYYNNYSLSQ
Sbjct: 1   MDSAHWPQVEVKNMDLEEEEGIKAVVERKAKARKDQILNCPRCNSNNTKFCYYNNYSLSQ 60

Query: 61  PRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANFSLPPSKNNQKNYNNDGGDDDDQG 120
           PRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANFSLPPSKNNQKNYNN GG DDDQG
Sbjct: 61  PRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANFSLPPSKNNQKNYNNGGGGDDDQG 120

Query: 121 ISQLNINITSCSSTATTTNTATSCCWLSSDNDHMNNQIMLRSNGIMSQRELIPFIPMPAP 180
           ISQLNINITSCSSTATTTNTA +CCWLSSDNDHMNNQIMLRSNGIMSQRELIPFIPMPAP
Sbjct: 121 ISQLNINITSCSSTATTTNTAATCCWLSSDNDHMNNQIMLRSNGIMSQRELIPFIPMPAP 180

Query: 181 APPQPTA--VAALEDFKQLSTIISTDQNGAKLGDAPAFWSGIFGGGSW 226
           APPQPTA  VAALEDFKQLSTIISTDQNGAKLGDAPAFW+GIFGGGSW
Sbjct: 181 APPQPTAVSVAALEDFKQLSTIISTDQNGAKLGDAPAFWNGIFGGGSW 228

[Close]
BLAST of Csa3G238150 vs. NCBI nr
Match: gi|908212344|tpg|DAA64915.1| (TPA_inf: dof protein [Cajanus cajan])

HSP 1 Score: 172.6 bits (436), Expect = 8.1e-40
Identity = 123/304 (40.46%), Postives = 156/304 (51.32%), Query Frame = 1 

Query: 1   MDSAHWPQ-VEVKNME--LEEEGLKAVVERKAKARKDQILNCPRCNSNNTKFCYYNNYSL 60
           MD+AHWPQ + VK +E  +        VE+KA+ +K+Q LNCPRC+S NTKFCYYNNYSL
Sbjct: 1   MDTAHWPQEMVVKPIEDIVVTNTCPKGVEKKARPQKEQALNCPRCHSINTKFCYYNNYSL 60

Query: 61  SQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANFSLPPSK--------------- 120
           +QPRYFCK+CRRYWT GGSLRNIPVGG SRKNKR S++ S P +K               
Sbjct: 61  TQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSS-STPNNKKLNVPDLVISPPTLS 120

Query: 121 --NNQKNYNN--DGGD---------DDDQGISQL----------NINIT-----SCSSTA 180
              N KN NN   G D          D + IS+L          N N++     S SS+ 
Sbjct: 121 HTQNPKNNNNVHQGQDLNLAFPATVPDFRNISELVQQNNNNNSSNSNMSASVSASSSSST 180

Query: 181 TTTNTATSCCWLSSDNDHMNNQIMLRSNGIMSQRELIPFIPMPAPAPP------------ 226
           TTT TAT+   LS+        + L S    S   L  F+PMP PA P            
Sbjct: 181 TTTTTATTASHLSA--------MELLSGITSSSTGLNAFMPMPVPADPNSVYTCGFPLQD 240

[Close]
BLAST of Csa3G238150 vs. NCBI nr
Match: gi|568844910|ref|XP_006476323.1| (PREDICTED: dof zinc finger protein DOF4.6 isoform X1 [Citrus sinensis])

HSP 1 Score: 166.4 bits (420), Expect = 5.8e-38
Identity = 116/295 (39.32%), Postives = 151/295 (51.19%), Query Frame = 1 

Query: 1   MDSAHWPQ-VEVKNME------LEEEGLKAVVERKAKARKDQILNCPRCNSNNTKFCYYN 60
           MD+A WPQ + VK +E        +    A +ERKA+ +K+Q LNCPRCNS NTKFCYYN
Sbjct: 1   MDTAQWPQEIVVKPIEEIVTNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYN 60

Query: 61  NYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANF------SLPPSKNNQKN 120
           NYSL+QPRYFCK+CRRYWT GGSLRNIPVGG SRKNKR S++       + PPS +  +N
Sbjct: 61  NYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSSSKKLPDPATPPSHHPHQN 120

Query: 121 YN-NDGGDDDD-----------QGISQL----NINITS---CSSTATTTNTATSCCWLSS 180
              +D G D +           + IS+L    NI+  S    SS+ TTT T TS   LS+
Sbjct: 121 PKIHDHGQDLNLAFPAATTQGYRSISELVQLPNIDNKSQIPISSSTTTTTTTTSSQQLSA 180

Query: 181 DNDHMNNQIMLRSNGIMSQRELIPFIPMPAPAPP------------QPTAVAALED---- 226
                     L     +S R L  F+PMP P P             +PT   +L+     
Sbjct: 181 ----------LELLTGISSRGLNSFMPMPVPDPNAIYAPGFPMQDFKPTLNFSLDGLGSG 240

[Close]
BLAST of Csa3G238150 vs. NCBI nr
Match: gi|641857916|gb|KDO76661.1| (hypothetical protein CISIN_1g023047mg [Citrus sinensis])

HSP 1 Score: 165.6 bits (418), Expect = 9.9e-38
Identity = 115/295 (38.98%), Postives = 151/295 (51.19%), Query Frame = 1 

Query: 1   MDSAHWPQ-VEVKNME------LEEEGLKAVVERKAKARKDQILNCPRCNSNNTKFCYYN 60
           MD+A WPQ + VK +E        +    A +ERKA+ +K+Q LNCPRCNS NTKFCYYN
Sbjct: 1   MDTAQWPQEIVVKPIEEIVTNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYN 60

Query: 61  NYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRPSANF------SLPPSKNNQKN 120
           NYSL+QPRYFCK+CRRYWT GGSLRNIPVGG SRKNKR S++       + PPS +  +N
Sbjct: 61  NYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSSSKKLPDPATPPSHHPHQN 120

Query: 121 YN-NDGGDDDD-----------QGISQL----NINITS---CSSTATTTNTATSCCWLSS 180
              +D G+D +           +  S+L    NI+  S    SS+ TTT T TS   LS+
Sbjct: 121 PKIHDHGEDLNLSFPAATTQGYRSFSELVQLPNIDNKSQIPISSSTTTTTTTTSSQQLSA 180

Query: 181 DNDHMNNQIMLRSNGIMSQRELIPFIPMPAPAPP------------QPTAVAALED---- 226
                     L     +S R L  F+PMP P P             +PT   +L+     
Sbjct: 181 ----------LELLTGISSRGLNSFMPMPVPDPNAIYAPGFPMQDFKPTLNFSLDGLGSG 240

The following BLAST results are available for this feature:
BLAST of Csa3G238150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DOF18_ARATH9.6e-3353.06Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1[more]
DOF46_ARATH1.2e-3060.18Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2[more]
DOF37_ARATH2.9e-2948.30Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2[more]
DOF25_ARATH4.2e-2877.03Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3[more]
DOF21_ARATH1.3e-2658.59Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2[more]
BLAST of Csa3G238150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9J3_CUCSA5.3e-131100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238150 PE=4 SV=1[more]
A0A0K8K5T8_CAJCA5.6e-4040.46Dof protein OS=Cajanus cajan GN=Dof8 PE=4 SV=1[more]
A0A067GDE5_CITSI6.9e-3838.98Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023047mg PE=4 SV=1[more]
A0A067GMW9_CITSI6.9e-3838.98Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023047mg PE=4 SV=1[more]
V4VIN3_9ROSI6.9e-3838.98Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021521mg PE=4 SV=1[more]
BLAST of Csa3G238150 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G64620.15.4e-3453.06 Dof-type zinc finger DNA-binding family protein[more]
AT4G24060.16.6e-3260.18 Dof-type zinc finger DNA-binding family protein[more]
AT2G46590.22.3e-2977.03 Dof-type zinc finger DNA-binding family protein[more]
AT3G61850.46.8e-2975.71 Dof-type zinc finger DNA-binding family protein[more]
AT2G28510.17.5e-2858.59 Dof-type zinc finger DNA-binding family protein[more]
BLAST of Csa3G238150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457069|ref|XP_004146271.1|7.6e-131100.00PREDICTED: dof zinc finger protein DOF1.8-like [Cucumis sativus][more]
gi|659111946|ref|XP_008455989.1|1.8e-12495.61PREDICTED: dof zinc finger protein DOF1.8-like [Cucumis melo][more]
gi|908212344|tpg|DAA64915.1|8.1e-4040.46TPA_inf: dof protein [Cajanus cajan][more]
gi|568844910|ref|XP_006476323.1|5.8e-3839.32PREDICTED: dof zinc finger protein DOF4.6 isoform X1 [Citrus sinensis][more]
gi|641857916|gb|KDO76661.1|9.9e-3838.98hypothetical protein CISIN_1g023047mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003851Znf_Dof
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0044212 transcription regulatory region DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G238150.1Csa3G238150.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003851Zinc finger, Dof-typePRODOMPD007478coord: 34..91
score: 4.0
IPR003851Zinc finger, Dof-typePFAMPF02701zf-Dofcoord: 34..91
score: 1.5
IPR003851Zinc finger, Dof-typePROSITEPS01361ZF_DOF_1coord: 39..75
scor
IPR003851Zinc finger, Dof-typePROFILEPS50884ZF_DOF_2coord: 37..91
score: 29
NoneNo IPR availablePANTHERPTHR31992FAMILY NOT NAMEDcoord: 22..94
score: 6.7
NoneNo IPR availablePANTHERPTHR31992:SF15SUBFAMILY NOT NAMEDcoord: 22..94
score: 6.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G238150Cla004880Watermelon (97103) v1cuwmB259
Csa3G238150Cla004274Watermelon (97103) v1cuwmB243
Csa3G238150MELO3C005902Melon (DHL92) v3.5.1cumeB178
Csa3G238150MELO3C019379Melon (DHL92) v3.5.1cumeB166
Csa3G238150ClCG05G009100Watermelon (Charleston Gray)cuwcgB230
Csa3G238150ClCG01G000270Watermelon (Charleston Gray)cuwcgB205
Csa3G238150Lsi09G000090Bottle gourd (USVL1VR-Ls)culsiB152
Csa3G238150Lsi05G001190Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G238150MELO3C005902.2Melon (DHL92) v3.6.1cumedB160
Csa3G238150MELO3C019379.2Melon (DHL92) v3.6.1cumedB238
Csa3G238150Cla97C01G000310Watermelon (97103) v2cuwmbB174
Csa3G238150Cla97C05G091430Watermelon (97103) v2cuwmbB215
Csa3G238150Bhi01G001132Wax gourdcuwgoB283
Csa3G238150Bhi12G000577Wax gourdcuwgoB263
Csa3G238150CSPI05G02980Wild cucumber (PI 183967)cpicuB224
Csa3G238150CSPI03G19620Wild cucumber (PI 183967)cpicuB120
Csa3G238150Cucsa.202290Cucumber (Gy14) v1cgycuB308
Csa3G238150Cucsa.032330Cucumber (Gy14) v1cgycuB003
Csa3G238150CmaCh16G000340Cucurbita maxima (Rimu)cmacuB321
Csa3G238150CmaCh15G010140Cucurbita maxima (Rimu)cmacuB286
Csa3G238150CmoCh15G010790Cucurbita moschata (Rifu)cmocuB273
Csa3G238150CmoCh16G000400Cucurbita moschata (Rifu)cmocuB310
Csa3G238150Cp4.1LG14g06900Cucurbita pepo (Zucchini)cpecuB206
Csa3G238150CsGy5G000240Cucumber (Gy14) v2cgybcuB208
Csa3G238150Carg15052Silver-seed gourdcarcuB1001
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa3G238150Csa5G139210Cucumber (Chinese Long) v2cucuB098
The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G238150Silver-seed gourdcarcuB0567
Csa3G238150Cucurbita maxima (Rimu)cmacuB412
Csa3G238150Cucurbita moschata (Rifu)cmocuB401
Csa3G238150Cucurbita moschata (Rifu)cmocuB595
Csa3G238150Cucurbita pepo (Zucchini)cpecuB036
Csa3G238150Cucurbita pepo (Zucchini)cpecuB722
Csa3G238150Cucumber (Gy14) v2cgybcuB109