Csa3G229420 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G229420
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 15005498 .. 15006607 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGCGTGAGAGGGAGAGCGTGTGAATTGTGTGGGAGAAAACCTAATCTAATTTCCTTTTATTATTATTATATATATATTATTAATTCGGGTTGGGTTGGGTTGAACCGAATTATTCACCCACAATCCAAGACCCAACCCAACCCGAAAAAATTCTATTTTTTTAACTCAACCCAATCCATATTTTAACATAACCCAGCCTAACCCTTATAATATGGATGGAGTAGTCTGGGTTAGGGTTCAACCCATATTTTTACACCCCTAGCTTCTCCATATGGACATCTTATTTGGTAGGTCTTTCTTTTCATAGAGTGCCTTCAATTTCTCCCAAGTAGCAAAGGCAGTAGTGGTTTCTTTAATTACCTGTCTCAACACATTATCAATAATATTCATAACAAGTGTACCATAAGCTACCTCTTCCATTGTTCTAACTTGGCCAAAGTTGCATGGAGTTCTTTTGGGTCTTGAACATAAATAAGATTTTAAATTAATAGTTTGATAACCAACATCAAACAATTAATTGCTTAAGTTTCCAACTTACCAAGAAGGATGGTACAACCCAATCAACCTCAAGTAGAGATTCACAAATTCCAATCTTAGAGGAAATTACTCAACCTTCTAGTAAAGAAAATAACCCAACTTAAACATATTGTAAATTTATTTAAAACTAATAATCATTAATTGATGGGTATATCTAGACCCAAACAAAACCTTACCAAAAGAACCTAAAACATGGCTGAAAAGGAGTCAAAGAAGGCTCACGACTTGGCTAAGAATAAGAATCGGCTCAGAACGGCTTGAGGAACTCACACGCGGCTGGAGTAGGAAGATCGGCTTGCTCTCGGCTCGGTGAGGAAGAAGGAAGACACGCGGCTTGCAACAAAGAGACGATCTCCGACGAAAGACGTGGCTGGGCTACGCGGATGTCACGGCTCAGCTCGGGTGAAGAACGCGGCTCGCGCGGACGTCACGGCTCGGTGGAGAGGCTTCGGCTGGCACGCGATAACCACAGCGGAACTTCGCTTGAACACGAAACGATGGACTTTGGCGCGTTTGGTAGTGTCGGACGATCGAATGTTCACCGGGGATAAGTTGAGTGGCGGCTAG

mRNA sequence

ATGAATCGCGAAGATCGGCTTGCTCTCGGCTCGGTGAGGAAGAAGGAAGACACGCGGCTTGCAACAAAGAGACGATCTCCGACGAAAGACGTGGCTGGGCTACGCGGATGTCACGGCTCAGCTCGGGTGAAGAACGCGGCTCGCGCGGACGTCACGGCTCGGTGGAGAGGCTTCGGCTGGCACGCGATAACCACAGCGGAACTTCGCTTGAACACGAAACGATGGACTTTGGCGCGTTTGGTAGTGTCGGACGATCGAATGTTCACCGGGGATAAGTTGAGTGGCGGCTAG

Coding sequence (CDS)

ATGAATCGCGAAGATCGGCTTGCTCTCGGCTCGGTGAGGAAGAAGGAAGACACGCGGCTTGCAACAAAGAGACGATCTCCGACGAAAGACGTGGCTGGGCTACGCGGATGTCACGGCTCAGCTCGGGTGAAGAACGCGGCTCGCGCGGACGTCACGGCTCGGTGGAGAGGCTTCGGCTGGCACGCGATAACCACAGCGGAACTTCGCTTGAACACGAAACGATGGACTTTGGCGCGTTTGGTAGTGTCGGACGATCGAATGTTCACCGGGGATAAGTTGAGTGGCGGCTAG

Protein sequence

MNREDRLALGSVRKKEDTRLATKRRSPTKDVAGLRGCHGSARVKNAARADVTARWRGFGWHAITTAELRLNTKRWTLARLVVSDDRMFTGDKLSGG*
Homology
[Close]
BLAST of Csa3G229420 vs. TrEMBL
Match: A0A0A0LAE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G229420 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.2e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MNREDRLALGSVRKKEDTRLATKRRSPTKDVAGLRGCHGSARVKNAARADVTARWRGFGW 60
          MNREDRLALGSVRKKEDTRLATKRRSPTKDVAGLRGCHGSARVKNAARADVTARWRGFGW
Sbjct: 1  MNREDRLALGSVRKKEDTRLATKRRSPTKDVAGLRGCHGSARVKNAARADVTARWRGFGW 60

Query: 61 HAITTAELRLNTKRWTLARLVVSDDRMFTGDKLSGG 97
          HAITTAELRLNTKRWTLARLVVSDDRMFTGDKLSGG
Sbjct: 61 HAITTAELRLNTKRWTLARLVVSDDRMFTGDKLSGG 96

[Close]
BLAST of Csa3G229420 vs. NCBI nr
Match: gi|700202484|gb|KGN57617.1| (hypothetical protein Csa_3G229420 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 1.7e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MNREDRLALGSVRKKEDTRLATKRRSPTKDVAGLRGCHGSARVKNAARADVTARWRGFGW 60
          MNREDRLALGSVRKKEDTRLATKRRSPTKDVAGLRGCHGSARVKNAARADVTARWRGFGW
Sbjct: 1  MNREDRLALGSVRKKEDTRLATKRRSPTKDVAGLRGCHGSARVKNAARADVTARWRGFGW 60

Query: 61 HAITTAELRLNTKRWTLARLVVSDDRMFTGDKLSGG 97
          HAITTAELRLNTKRWTLARLVVSDDRMFTGDKLSGG
Sbjct: 61 HAITTAELRLNTKRWTLARLVVSDDRMFTGDKLSGG 96

The following BLAST results are available for this feature:
BLAST of Csa3G229420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAE6_CUCSA1.2e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G229420 PE=4 SV=1[more]
BLAST of Csa3G229420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202484|gb|KGN57617.1|1.7e-47100.00hypothetical protein Csa_3G229420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU147934cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G229420.1Csa3G229420.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU147934CU147934transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G229420Watermelon (97103) v2cuwmbB215
Csa3G229420Wax gourdcuwgoB283
Csa3G229420Cucumber (Gy14) v1cgycuB003
Csa3G229420Cucurbita maxima (Rimu)cmacuB320
Csa3G229420Cucurbita maxima (Rimu)cmacuB697
Csa3G229420Cucurbita moschata (Rifu)cmocuB307
Csa3G229420Cucurbita moschata (Rifu)cmocuB687
Csa3G229420Melon (DHL92) v3.5.1cumeB166
Csa3G229420Watermelon (Charleston Gray)cuwcgB230
Csa3G229420Watermelon (97103) v1cuwmB243
Csa3G229420Cucurbita pepo (Zucchini)cpecuB205
Csa3G229420Cucurbita pepo (Zucchini)cpecuB389
Csa3G229420Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G229420Cucumber (Gy14) v2cgybcuB109
Csa3G229420Melon (DHL92) v3.6.1cumedB238
Csa3G229420Silver-seed gourdcarcuB0043
Csa3G229420Silver-seed gourdcarcuB0675