Csa3G219180 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G219180
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionrRNA N-glycosidase; contains IPR000772 (Ricin B lectin domain)
LocationChr3 : 14544029 .. 14544895 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAATTGTGTTGAGCATTGTTGTAGCCTTCTCTCTCACCACCCATCTTGCCATGGCAGTGCCCTCCGACTATGGATATCAAGTCGTCCCTGGAGCCACACATCTTGTGGGTCGAGATGGATTGTGTTTGGAGATGTCTCCATGGTTTTACAAAGGTAGTAATTTTCCAACTCGATTATCACCCTGCAACGAACAAAAGAAACAAACTCAGTTATGGACTGTTCTCCAAGATGAAACGATTCGACCAATGAATGATAGATATTGCTTGGTTTCTTACGTCTCTGTTAACTTCATAACCAATGTGGTAGTAAGCGAGTGTGCTAAAGAGCCACATTCTAATAAGAAATGGATCCATAAGGAGGACAGAACCATAGTCCATGTTGGGTCAGGAATGGTTCTAACAGGAAATTCAAACTATGTGACAGTACAAAGGAACAAAAATGCACCATCACAAAGCTGGGAAGCAACAAAAAGTTTAACCCCAATGGTTGCAAACATAAAATGGCTTGAAAACTTGTGTTTGCAATCGACGAAAGATTCGAATTATGTACAGTTGGATGGATGTAATAGTGAAAATAAGAGCCAACATTGGTCATTGTATGGAGATGGAACCATTAGAAAACATGTGAATAGAAACTATTGCTTGACTTCTGAACAAGATTTTGGTCGTTTTGTAGCTGTGTCTAAATGTGAAGACAAACCACAACAACGTTGGGGTCTTGGTGCTGAAGACAATACAATTAACCATCCCAATACTGACATGGTCATGGATGTGCTTAGTGTGCCTTTTGATGATCTTCCATTAGCGGTCGTTACAAACCACCGTGATGGAACTGCTACCCAACGATGGATTATTTACTAA

mRNA sequence

ATGAAAGAAATTGTGTTGAGCATTGTTGTAGCCTTCTCTCTCACCACCCATCTTGCCATGGCAGTGCCCTCCGACTATGGATATCAAGTCGTCCCTGGAGCCACACATCTTGTGGGTCGAGATGGATTGTGTTTGGAGATGTCTCCATGGTTTTACAAAGGTAGTAATTTTCCAACTCGATTATCACCCTGCAACGAACAAAAGAAACAAACTCAGTTATGGACTGTTCTCCAAGATGAAACGATTCGACCAATGAATGATAGATATTGCTTGGTTTCTTACGTCTCTGTTAACTTCATAACCAATGTGGTAGTAAGCGAGTGTGCTAAAGAGCCACATTCTAATAAGAAATGGATCCATAAGGAGGACAGAACCATAGTCCATGTTGGGTCAGGAATGGTTCTAACAGGAAATTCAAACTATGTGACAGTACAAAGGAACAAAAATGCACCATCACAAAGCTGGGAAGCAACAAAAAGTTTAACCCCAATGGTTGCAAACATAAAATGGCTTGAAAACTTGTGTTTGCAATCGACGAAAGATTCGAATTATGTACAGTTGGATGGATGTAATAGTGAAAATAAGAGCCAACATTGGTCATTGTATGGAGATGGAACCATTAGAAAACATGTGAATAGAAACTATTGCTTGACTTCTGAACAAGATTTTGGTCGTTTTGTAGCTGTGTCTAAATGTGAAGACAAACCACAACAACGTTGGGGTCTTGGTGCTGAAGACAATACAATTAACCATCCCAATACTGACATGGTCATGGATGTGCTTAGTGTGCCTTTTGATGATCTTCCATTAGCGGTCGTTACAAACCACCGTGATGGAACTGCTACCCAACGATGGATTATTTACTAA

Coding sequence (CDS)

ATGAAAGAAATTGTGTTGAGCATTGTTGTAGCCTTCTCTCTCACCACCCATCTTGCCATGGCAGTGCCCTCCGACTATGGATATCAAGTCGTCCCTGGAGCCACACATCTTGTGGGTCGAGATGGATTGTGTTTGGAGATGTCTCCATGGTTTTACAAAGGTAGTAATTTTCCAACTCGATTATCACCCTGCAACGAACAAAAGAAACAAACTCAGTTATGGACTGTTCTCCAAGATGAAACGATTCGACCAATGAATGATAGATATTGCTTGGTTTCTTACGTCTCTGTTAACTTCATAACCAATGTGGTAGTAAGCGAGTGTGCTAAAGAGCCACATTCTAATAAGAAATGGATCCATAAGGAGGACAGAACCATAGTCCATGTTGGGTCAGGAATGGTTCTAACAGGAAATTCAAACTATGTGACAGTACAAAGGAACAAAAATGCACCATCACAAAGCTGGGAAGCAACAAAAAGTTTAACCCCAATGGTTGCAAACATAAAATGGCTTGAAAACTTGTGTTTGCAATCGACGAAAGATTCGAATTATGTACAGTTGGATGGATGTAATAGTGAAAATAAGAGCCAACATTGGTCATTGTATGGAGATGGAACCATTAGAAAACATGTGAATAGAAACTATTGCTTGACTTCTGAACAAGATTTTGGTCGTTTTGTAGCTGTGTCTAAATGTGAAGACAAACCACAACAACGTTGGGGTCTTGGTGCTGAAGACAATACAATTAACCATCCCAATACTGACATGGTCATGGATGTGCTTAGTGTGCCTTTTGATGATCTTCCATTAGCGGTCGTTACAAACCACCGTGATGGAACTGCTACCCAACGATGGATTATTTACTAA

Protein sequence

MKEIVLSIVVAFSLTTHLAMAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWIIY*
Homology
[Close]
BLAST of Csa3G219180 vs. Swiss-Prot
Match: RIP1_SAMNI (Ribosome-inactivating protein SNAI' OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.0e-28
Identity = 87/257 (33.85%), Postives = 131/257 (50.97%), Query Frame = 1 

Query: 39  GRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVN 98
           GRDG C E+     K    P +LS C EQ  Q   WT   D TI+ +    CL +  SV 
Sbjct: 323 GRDGFCAEVKNGDEKDGT-PVQLSSCGEQSNQQ--WTFSTDGTIQSLGK--CLTTSSSV- 382

Query: 99  FITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLTG----NSNYVTVQRNKNAPSQS 158
                ++  C   P  + KW+   D TI +  SG+VLT         V++++N +A  Q 
Sbjct: 383 -----MIYNCKVVPPESTKWVVSIDGTITNPRSGLVLTAPKAAEGTLVSLEKNVHAARQG 442

Query: 159 WEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKS---QHWSLYGDGTIRKHV 218
           W    ++ P+V  I   E +CL++   +N V L  C+ ++ S   Q W+LYGDGTIR + 
Sbjct: 443 W-IVGNVEPLVTFIVGYEQMCLETNPGNNDVSLGDCSVKSASKVDQKWALYGDGTIRVNN 502

Query: 219 NRNYCLTSE-QDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNTDMVMDVLSVPFDDLPL 278
           +R+ C+TSE +     + + KC     QRW     D TI++P++ +VM    V  +D+PL
Sbjct: 503 DRSLCVTSEGKSSNEPIIILKCLGWANQRWVFNT-DGTISNPDSKLVM---HVDQNDVPL 562

Query: 279 -AVVTNHRDGTATQRWI 287
             ++ +H  GT+ Q+WI
Sbjct: 563 RKIILSHPSGTSNQQWI 563

[Close]
BLAST of Csa3G219180 vs. Swiss-Prot
Match: AGGL_RICCO (Agglutinin OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.5e-26
Identity = 84/231 (36.36%), Postives = 121/231 (52.38%), Query Frame = 1 

Query: 37  LVGRDGLCLEMS-PWFYKGSNFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYV 96
           +VGR+GLC++++   F+ G+  P +L PC       QLWT+ +D TIR  N +   +S  
Sbjct: 315 IVGRNGLCVDVTGEEFFDGN--PIQLWPCKSNTDWNQLWTLRKDSTIRS-NGKCLTISKS 374

Query: 97  SVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVL---TGNSNY-VTVQRNKNAP 156
           S      VV+  C+       +W   ++RTI++  SG+VL   +GNS   +TVQ N  A 
Sbjct: 375 SPR--QQVVIYNCSTATVGATRWQIWDNRTIINPRSGLVLAATSGNSGTKLTVQTNIYAV 434

Query: 157 SQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHV 216
           SQ W  T +  P V  I  L  +CLQ+  +S  V L+ C SE   Q W+LY DG+IR   
Sbjct: 435 SQGWLPTNNTQPFVTTIVGLYGMCLQA--NSGKVWLEDCTSEKAEQQWALYADGSIRPQQ 494

Query: 217 NRNYCLTSEQDF-GRFVAVSKCEDKPQ-QRWGLGAEDNTINHPNTDMVMDV 261
           NR+ CLT++ +  G  V +  C      QRW +   D TI +    +V+DV
Sbjct: 495 NRDNCLTTDANIKGTVVKILSCGPASSGQRW-MFKNDGTILNLYNGLVLDV 537

[Close]
BLAST of Csa3G219180 vs. Swiss-Prot
Match: AGGL_ABRPR (Agglutinin-1 OS=Abrus precatorius GN=AAG PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.6e-24
Identity = 81/253 (32.02%), Postives = 119/253 (47.04%), Query Frame = 1 

Query: 39  GRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVN 98
           GRDGLC+++S   Y   N P  L  C +Q +  QLWT+  D+TIR          Y   N
Sbjct: 300 GRDGLCVDVSDNAYNNGN-PIILWKCKDQLEVNQLWTLKSDKTIRSKGKCLTTYGYAPGN 359

Query: 99  FITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLTGNSNYV----TVQRNKNAPSQS 158
           +   V++ +C+        W   ++ TI++  SG+VL+  S+ +    TVQ+N     Q 
Sbjct: 360 Y---VMIYDCSSAVAEATYWDIWDNGTIINPKSGLVLSAESSSMGGTLTVQKNDYRMRQG 419

Query: 159 WEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRN 218
           W      +P V +I     LC+++    N + LD C+   + Q W++Y DG+IR   N N
Sbjct: 420 WRTGNDTSPFVTSIAGFFKLCMEA--HGNSMWLDVCDITKEEQQWAVYPDGSIRPVQNTN 479

Query: 219 YCLTSEQ-DFGRFVAVSKCEDK-PQQRWGLGAEDNTINHPNTDMVMDVLSVPFDDLPLAV 278
            CLT E+   G  + +  C +    QRW +   D TI +   DMVMDV S   D     +
Sbjct: 480 NCLTCEEHKQGATIVMMGCSNAWASQRW-VFKSDGTIYNLYDDMVMDVKS--SDPSLKQI 539

Query: 279 VTNHRDGTATQRW 286
           +     G A Q W
Sbjct: 540 ILWPYTGNANQMW 543

[Close]
BLAST of Csa3G219180 vs. Swiss-Prot
Match: RICI_RICCO (Ricin OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-23
Identity = 79/230 (34.35%), Postives = 118/230 (51.30%), Query Frame = 1 

Query: 37  LVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVS 96
           +VGR+GLC+++    +   N   +L PC       QLWT+ +D TIR  ++  CL +Y  
Sbjct: 327 IVGRNGLCVDVRDGRFHNGN-AIQLWPCKSNTDANQLWTLKRDNTIR--SNGKCLTTY-G 386

Query: 97  VNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVL---TGNSNY-VTVQRNKNAPS 156
            +    V++ +C        +W   ++ TI++  S +VL   +GNS   +TVQ N  A S
Sbjct: 387 YSPGVYVMIYDCNTAATDATRWQIWDNGTIINPRSSLVLAATSGNSGTTLTVQTNIYAVS 446

Query: 157 QSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHVN 216
           Q W  T +  P V  I  L  LCLQ+  +S  V ++ C+SE   Q W+LY DG+IR   N
Sbjct: 447 QGWLPTNNTQPFVTTIVGLYGLCLQA--NSGQVWIEDCSSEKAEQQWALYADGSIRPQQN 506

Query: 217 RNYCLTSEQDFGR-FVAVSKCEDKPQ-QRWGLGAEDNTINHPNTDMVMDV 261
           R+ CLTS+ +     V +  C      QRW +   D TI +  + +V+DV
Sbjct: 507 RDNCLTSDSNIRETVVKILSCGPASSGQRW-MFKNDGTILNLYSGLVLDV 549

[Close]
BLAST of Csa3G219180 vs. Swiss-Prot
Match: SGSL_TRIAN (Seed lectin (Fragments) OS=Trichosanthes anguina PE=1 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 7.4e-22
Identity = 75/263 (28.52%), Postives = 122/263 (46.39%), Query Frame = 1 

Query: 35  THLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSY 94
           T + GRD LC++++       +    L PC +Q  Q   WT   D T+R +    CL + 
Sbjct: 265 TRISGRDALCVDVAGALTSDGS-RLILYPCGQQVNQK--WTFHSDGTVRSLGK--CLATN 324

Query: 95  VSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVG-SGMVLTGN----SNYVTVQRNKN 154
            S  F   VV+ +C+K    +  W      TI++     + LT N    S  +T++ N  
Sbjct: 325 NS-KFGNLVVIYDCSKLAAEDISWDVSVGGTIMNPNYEDLALTSNKATRSTNLTMEVNTY 384

Query: 155 APSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRK 214
           + SQ W     + P++ +I  L+++CL++T  +  + L+ C    + Q W+LY DGTIR 
Sbjct: 385 SASQGWRVGNYVQPIIGSIVGLDDMCLEATDGNTNMWLEECVPNQREQSWALYSDGTIRV 444

Query: 215 HVNRNYCLT---SEQDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNTDMVMDVLSVPFD 274
             NR  C+T   S  D  + + +  C+    QRW   A+ +     N  + MDV      
Sbjct: 445 DDNRELCVTASSSTYDNWKVITILNCDGSNNQRWVFLADGSISTPGNQRLAMDVAR---S 504

Query: 275 DLPLAVVTNHR-DGTATQRWIIY 289
           D+ L  +  HR  G   Q+W+++
Sbjct: 505 DVDLKKIILHRPHGDLNQQWVLF 518

[Close]
BLAST of Csa3G219180 vs. TrEMBL
Match: A0A0A0L756_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G219180 PE=4 SV=1)

HSP 1 Score: 603.6 bits (1555), Expect = 1.3e-169
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 1 

Query: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTR 60
           MKEIVLSIVVAFSLTTHLAMAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTR
Sbjct: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTR 60

Query: 61  LSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIH 120
           LSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIH
Sbjct: 61  LSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIH 120

Query: 121 KEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTK 180
           KEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTK
Sbjct: 121 KEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTK 180

Query: 181 DSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRW 240
           DSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRW
Sbjct: 181 DSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRW 240

Query: 241 GLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWIIY 289
           GLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWIIY
Sbjct: 241 GLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWIIY 288

[Close]
BLAST of Csa3G219180 vs. TrEMBL
Match: Q9SLV9_CUCSA (XSP30 OS=Cucumis sativus GN=XSP30 PE=2 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 3.9e-110
Identity = 200/292 (68.49%), Postives = 230/292 (78.77%), Query Frame = 1 

Query: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQV----VPGATHLVGRDGLCLEMSPWFY-KGS 60
           MKEIVLSI+VAFSLTT LA+AVP +YGY V    VPGATHLVGRDGLCLEMSPW+   G 
Sbjct: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60

Query: 61  NFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSN 120
           NFPTRLSPC+E KKQTQLWT++ D TIRPMND++CL + V    I   VVSEC K    N
Sbjct: 61  NFPTRLSPCDE-KKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPN 120

Query: 121 KKWIHKEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLC 180
           KKW  K D TI  V S MVLTG+ +YVT+Q NK  PSQSWE T+SL  MVANI+WL NLC
Sbjct: 121 KKWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLC 180

Query: 181 LQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDK 240
           LQST DS++V L+GCN++NK Q W+LY DGTIR+HVN+NYCLTS+QDFGRFV VSKCEDK
Sbjct: 181 LQSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDK 240

Query: 241 PQQRWGLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWII 288
           PQQRW L A+D TI+HPNTDMV+DV SVP    P  +VTN RDG+A+QRW I
Sbjct: 241 PQQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTI 291

[Close]
BLAST of Csa3G219180 vs. TrEMBL
Match: A0A0A0L9D1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G217160 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 1.1e-109
Identity = 199/292 (68.15%), Postives = 229/292 (78.42%), Query Frame = 1 

Query: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQV----VPGATHLVGRDGLCLEMSPWFY-KGS 60
           MKEIVLSI+VAFSLTT L +AVP +YGY V    VPGATHLVGRDGLCLEMSPW+   G 
Sbjct: 1   MKEIVLSIIVAFSLTTQLVIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60

Query: 61  NFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSN 120
           NFPTRLSPC+E KKQTQLWT++ D TIRPMND++CL + V    I   VVSEC K    N
Sbjct: 61  NFPTRLSPCDE-KKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPN 120

Query: 121 KKWIHKEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLC 180
           KKW  K D TI  V S MVLTG+ +YVT+Q NK  PSQSWE T+SL  MVANI+WL NLC
Sbjct: 121 KKWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLC 180

Query: 181 LQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDK 240
           LQST DS++V L+GCN++NK Q W+LY DGTIR+HVN+NYCLTS+QDFGRFV VSKCEDK
Sbjct: 181 LQSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDK 240

Query: 241 PQQRWGLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWII 288
           PQQRW L A+D TI+HPNTDMV+DV SVP    P  +VTN RDG+A+QRW I
Sbjct: 241 PQQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTI 291

[Close]
BLAST of Csa3G219180 vs. TrEMBL
Match: A0A0A0LAC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G217140 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 6.0e-103
Identity = 194/292 (66.44%), Postives = 224/292 (76.71%), Query Frame = 1 

Query: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQV----VPGATHLVGRDGLCLEM---SPWFYK 60
           MKEIVLSI+VAFSLTT L +AVP +YGY V    VPGATHLVGRDGLCLEM     +   
Sbjct: 1   MKEIVLSIIVAFSLTTQLVIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMVLLRSYKPA 60

Query: 61  GSNFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPH 120
           G NFPTRL PC+E KKQTQLWTV+ D TIRPMNDR+CL + V    I   VVSEC K   
Sbjct: 61  GINFPTRLLPCDE-KKQTQLWTVVGDGTIRPMNDRFCLAADVFYGVINKAVVSECGKVSD 120

Query: 121 SNKKWIHKEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLEN 180
           SNK+WIHK D TI    S MVLTG+S+YVT+Q  K  PSQSWE T+SL PMVANI+WL N
Sbjct: 121 SNKQWIHKNDGTIALAESRMVLTGDSDYVTLQSIKYTPSQSWEVTESLNPMVANIEWLNN 180

Query: 181 LCLQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCE 240
           LCLQST DS+ V L+GCN+  K Q W+LY DGTIR+HVNRNYCLTSEQ++ R V VSKCE
Sbjct: 181 LCLQSTDDSSNVGLNGCNTYTKYQRWALYADGTIRQHVNRNYCLTSEQNYDRSVVVSKCE 240

Query: 241 DKPQQRWGLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRW 286
           DKPQQRW L A+D+TI+HPNT+MV+DVL+V     PL +VTNH DG+A+QRW
Sbjct: 241 DKPQQRWSLNAKDSTIDHPNTNMVLDVLNVLDSASPLVIVTNHPDGSASQRW 291

[Close]
BLAST of Csa3G219180 vs. TrEMBL
Match: B5WYH8_SAMEB (rRNA N-glycosylase (Fragment) OS=Sambucus ebulus GN=ar PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.4e-27
Identity = 86/263 (32.70%), Postives = 135/263 (51.33%), Query Frame = 1 

Query: 30  VVPGATHLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRY 89
           VV     + G DGLC+++S   Y   N P +LSPC  Q   TQ WT   D TIR +    
Sbjct: 287 VVEVTRRISGWDGLCVDVSDDHYIDGN-PVQLSPCGNQC--TQQWTFRTDGTIRWLGK-- 346

Query: 90  CLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLTG----NSNYVTVQ 149
           CL +  SV      ++++C   P  + KW+   D TI +  SG+VLT         ++ +
Sbjct: 347 CLTASSSV------MINDCNTVPPEDTKWVVSIDGTITNPSSGLVLTAPQTLEGTALSPE 406

Query: 150 RNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHWSLYGDG 209
            N +A  Q W     + P+V +I   + +CL+   ++N+V ++ C      Q W+LYGDG
Sbjct: 407 NNIHAAIQGW-TVGDVEPLVTSIVGYKQMCLREDGENNFVWMEHCVLNRTEQEWALYGDG 466

Query: 210 TIRKHVNRNYCLTSE-QDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNTDMVMDVLSVP 269
           TIR + NR+ C+TS+  +    + + KC+    QRW     + TI++PNT  VMDV    
Sbjct: 467 TIRVNSNRSLCVTSQYHEPSDLIIILKCQGSSNQRWVFNT-NGTISNPNTTKVMDVAQA- 526

Query: 270 FDDLPLAVVTNHR-DGTATQRWI 287
             ++ L  +  +R +G +  +WI
Sbjct: 527 --NVSLRKIILYRPNGESNHQWI 533

[Close]
BLAST of Csa3G219180 vs. NCBI nr
Match: gi|449457105|ref|XP_004146289.1| (PREDICTED: nigrin b-like [Cucumis sativus])

HSP 1 Score: 603.6 bits (1555), Expect = 1.8e-169
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 1 

Query: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTR 60
           MKEIVLSIVVAFSLTTHLAMAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTR
Sbjct: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTR 60

Query: 61  LSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIH 120
           LSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIH
Sbjct: 61  LSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIH 120

Query: 121 KEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTK 180
           KEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTK
Sbjct: 121 KEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTK 180

Query: 181 DSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRW 240
           DSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRW
Sbjct: 181 DSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRW 240

Query: 241 GLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWIIY 289
           GLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWIIY
Sbjct: 241 GLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWIIY 288

[Close]
BLAST of Csa3G219180 vs. NCBI nr
Match: gi|659112133|ref|XP_008456079.1| (PREDICTED: nigrin b-like [Cucumis melo])

HSP 1 Score: 454.9 bits (1169), Expect = 1.0e-124
Identity = 215/291 (73.88%), Postives = 249/291 (85.57%), Query Frame = 1 

Query: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQV----VPGATHLVGRDGLCLEMSPWFYKGSN 60
           MKEIVLSI+VAFSLTTHLAMAVPS+YGY      VP ATHLVGRDGLCLEMSPWFY+G+N
Sbjct: 1   MKEIVLSIIVAFSLTTHLAMAVPSNYGYGGEYGGVPRATHLVGRDGLCLEMSPWFYRGNN 60

Query: 61  FPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNK 120
           FPTRLSPC+E KKQTQLWTV+ D TIRPMND++CLV+ V V  I   VV ECAKEP+SNK
Sbjct: 61  FPTRLSPCDEHKKQTQLWTVVGDGTIRPMNDKFCLVADVLVGLINKAVVRECAKEPNSNK 120

Query: 121 KWIHKEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCL 180
           +W HK+D TI HV SGMVLTG+S+YVT+Q NKN PSQSWEAT+S TPM+ANI+WL NLCL
Sbjct: 121 RWTHKKDGTITHVESGMVLTGDSDYVTLQSNKNTPSQSWEATESSTPMIANIEWLNNLCL 180

Query: 181 QSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKP 240
           QST DSN+V L+GCN ENK Q W+LYGDGTIR++VNRNYCLTS++  GRF+ +SKCEDKP
Sbjct: 181 QSTDDSNHVGLNGCNRENKDQRWALYGDGTIRQNVNRNYCLTSDEYLGRFIVMSKCEDKP 240

Query: 241 QQRWGLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWII 288
           QQRW LGA+D+TI+HPN+DMVMDVL VP+ D   AVVTN RDG+A+QRW I
Sbjct: 241 QQRWNLGAKDSTIDHPNSDMVMDVLFVPYYDFSSAVVTNRRDGSASQRWTI 291

[Close]
BLAST of Csa3G219180 vs. NCBI nr
Match: gi|566006087|ref|NP_001274403.1| (uncharacterized protein LOC101221335 precursor [Cucumis sativus])

HSP 1 Score: 406.0 bits (1042), Expect = 5.6e-110
Identity = 200/292 (68.49%), Postives = 230/292 (78.77%), Query Frame = 1 

Query: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQV----VPGATHLVGRDGLCLEMSPWFY-KGS 60
           MKEIVLSI+VAFSLTT LA+AVP +YGY V    VPGATHLVGRDGLCLEMSPW+   G 
Sbjct: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60

Query: 61  NFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSN 120
           NFPTRLSPC+E KKQTQLWT++ D TIRPMND++CL + V    I   VVSEC K    N
Sbjct: 61  NFPTRLSPCDE-KKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPN 120

Query: 121 KKWIHKEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLC 180
           KKW  K D TI  V S MVLTG+ +YVT+Q NK  PSQSWE T+SL  MVANI+WL NLC
Sbjct: 121 KKWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLC 180

Query: 181 LQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDK 240
           LQST DS++V L+GCN++NK Q W+LY DGTIR+HVN+NYCLTS+QDFGRFV VSKCEDK
Sbjct: 181 LQSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDK 240

Query: 241 PQQRWGLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWII 288
           PQQRW L A+D TI+HPNTDMV+DV SVP    P  +VTN RDG+A+QRW I
Sbjct: 241 PQQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTI 291

[Close]
BLAST of Csa3G219180 vs. NCBI nr
Match: gi|700202446|gb|KGN57579.1| (hypothetical protein Csa_3G217160 [Cucumis sativus])

HSP 1 Score: 404.4 bits (1038), Expect = 1.6e-109
Identity = 199/292 (68.15%), Postives = 229/292 (78.42%), Query Frame = 1 

Query: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQV----VPGATHLVGRDGLCLEMSPWFY-KGS 60
           MKEIVLSI+VAFSLTT L +AVP +YGY V    VPGATHLVGRDGLCLEMSPW+   G 
Sbjct: 1   MKEIVLSIIVAFSLTTQLVIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60

Query: 61  NFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSN 120
           NFPTRLSPC+E KKQTQLWT++ D TIRPMND++CL + V    I   VVSEC K    N
Sbjct: 61  NFPTRLSPCDE-KKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPN 120

Query: 121 KKWIHKEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLC 180
           KKW  K D TI  V S MVLTG+ +YVT+Q NK  PSQSWE T+SL  MVANI+WL NLC
Sbjct: 121 KKWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLC 180

Query: 181 LQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDK 240
           LQST DS++V L+GCN++NK Q W+LY DGTIR+HVN+NYCLTS+QDFGRFV VSKCEDK
Sbjct: 181 LQSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDK 240

Query: 241 PQQRWGLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWII 288
           PQQRW L A+D TI+HPNTDMV+DV SVP    P  +VTN RDG+A+QRW I
Sbjct: 241 PQQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTI 291

[Close]
BLAST of Csa3G219180 vs. NCBI nr
Match: gi|659112435|ref|XP_008456219.1| (PREDICTED: nigrin b-like [Cucumis melo])

HSP 1 Score: 399.4 bits (1025), Expect = 5.2e-108
Identity = 196/247 (79.35%), Postives = 215/247 (87.04%), Query Frame = 1 

Query: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTR 60
           MKE V SI+VAFSLTTHLAMA+P  + ++    ATHLVGRDG CLEMS WFYKG+  PTR
Sbjct: 1   MKEFVSSIIVAFSLTTHLAMAMPQLWIWRFSV-ATHLVGRDGFCLEMSSWFYKGNYIPTR 60

Query: 61  LSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVN-FITNVVVSECAKEPHSNKKWI 120
           LSPC++ KKQTQ  TVLQD TIRPMNDRYCLV YV VN FITNVVVSECAKEP+SNKKW 
Sbjct: 61  LSPCDKHKKQTQFRTVLQDGTIRPMNDRYCLVLYVLVNKFITNVVVSECAKEPNSNKKWT 120

Query: 121 HKEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQST 180
           HKED TIVH+GS MV+TGN +YVT+QRNKNAPSQSW+AT+SLTPMV NIKWLENLCLQST
Sbjct: 121 HKEDGTIVHIGSEMVITGNLDYVTLQRNKNAPSQSWKATESLTPMVVNIKWLENLCLQST 180

Query: 181 KDSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQR 240
           +DSNYV LDGCNSENKSQ W+LY DGTIRKHVNRNYCLTSE+  GRFV VSKCEDKPQQR
Sbjct: 181 EDSNYVGLDGCNSENKSQRWALYSDGTIRKHVNRNYCLTSEKYSGRFVIVSKCEDKPQQR 240

Query: 241 WGLGAED 247
           W LGA+D
Sbjct: 241 WDLGAKD 246

The following BLAST results are available for this feature:
BLAST of Csa3G219180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RIP1_SAMNI7.0e-2833.85Ribosome-inactivating protein SNAI' OS=Sambucus nigra PE=1 SV=1[more]
AGGL_RICCO8.5e-2636.36Agglutinin OS=Ricinus communis PE=1 SV=1[more]
AGGL_ABRPR3.6e-2432.02Agglutinin-1 OS=Abrus precatorius GN=AAG PE=1 SV=1[more]
RICI_RICCO1.0e-2334.35Ricin OS=Ricinus communis PE=1 SV=1[more]
SGSL_TRIAN7.4e-2228.52Seed lectin (Fragments) OS=Trichosanthes anguina PE=1 SV=2[more]
BLAST of Csa3G219180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L756_CUCSA1.3e-169100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G219180 PE=4 SV=1[more]
Q9SLV9_CUCSA3.9e-11068.49XSP30 OS=Cucumis sativus GN=XSP30 PE=2 SV=1[more]
A0A0A0L9D1_CUCSA1.1e-10968.15Uncharacterized protein OS=Cucumis sativus GN=Csa_3G217160 PE=4 SV=1[more]
A0A0A0LAC2_CUCSA6.0e-10366.44Uncharacterized protein OS=Cucumis sativus GN=Csa_3G217140 PE=4 SV=1[more]
B5WYH8_SAMEB5.4e-2732.70rRNA N-glycosylase (Fragment) OS=Sambucus ebulus GN=ar PE=4 SV=1[more]
BLAST of Csa3G219180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457105|ref|XP_004146289.1|1.8e-169100.00PREDICTED: nigrin b-like [Cucumis sativus][more]
gi|659112133|ref|XP_008456079.1|1.0e-12473.88PREDICTED: nigrin b-like [Cucumis melo][more]
gi|566006087|ref|NP_001274403.1|5.6e-11068.49uncharacterized protein LOC101221335 precursor [Cucumis sativus][more]
gi|700202446|gb|KGN57579.1|1.6e-10968.15hypothetical protein Csa_3G217160 [Cucumis sativus][more]
gi|659112435|ref|XP_008456219.1|5.2e-10879.35PREDICTED: nigrin b-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000772Ricin_B_lectin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G219180.1Csa3G219180.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000772Ricin B, lectin domainPFAMPF00652Ricin_B_lectincoord: 172..285
score: 6.7E-19coord: 36..155
score: 9.1
IPR000772Ricin B, lectin domainSMARTSM00458ricin_3coord: 32..158
score: 2.1E-6coord: 162..288
score: 7.0
IPR000772Ricin B, lectin domainPROFILEPS50231RICIN_B_LECTINcoord: 31..158
score: 20.209coord: 161..288
score: 26
IPR000772Ricin B, lectin domainunknownSSF50370Ricin B-like lectinscoord: 165..287
score: 2.92E-24coord: 30..156
score: 5.64
NoneNo IPR availableGENE3DG3DSA:2.80.10.50coord: 168..287
score: 3.4E-21coord: 36..157
score: 8.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G219180Cucumber (Gy14) v1cgycuB003
Csa3G219180Cucurbita maxima (Rimu)cmacuB320
Csa3G219180Cucurbita maxima (Rimu)cmacuB697
Csa3G219180Cucurbita moschata (Rifu)cmocuB307
Csa3G219180Cucurbita moschata (Rifu)cmocuB687
Csa3G219180Melon (DHL92) v3.5.1cumeB166
Csa3G219180Watermelon (Charleston Gray)cuwcgB230
Csa3G219180Watermelon (97103) v1cuwmB243
Csa3G219180Cucurbita pepo (Zucchini)cpecuB205
Csa3G219180Cucurbita pepo (Zucchini)cpecuB389
Csa3G219180Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G219180Cucumber (Gy14) v2cgybcuB109
Csa3G219180Melon (DHL92) v3.6.1cumedB238
Csa3G219180Silver-seed gourdcarcuB0064
Csa3G219180Silver-seed gourdcarcuB0065
Csa3G219180Silver-seed gourdcarcuB0675
Csa3G219180Watermelon (97103) v2cuwmbB215
Csa3G219180Wax gourdcuwgoB283