Csa3G219170 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G219170
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 14525373 .. 14525667 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTCGAGGAAAACTTCTCTCGATGTGTCATCGGGATTGCCCTTTCCCCGATATGCGGAGGTGGCGTCAGACTTATTCCACTACCGACGTCGTCTACACATCGGCATGGACTACGTCGAGAATAAAGAGGATGTCGACATCGTCCCTTTAGCGCGTCAATAAAAGTTGCCCCAACATAGTACTCCCGACGTTCTACCCAATGGAGAATTCGATGTTGGAAAAATCTTAGTTAATACGCTTTGCTATTTTTGCTGATGATCTGTGGCGTCAAGAATTCTCTGATTTCTTGTAG

mRNA sequence

ATGACGTCGAGGAAAACTTCTCTCGATGTGTCATCGGGATTGCCCTTTCCCCGATATGCGGAGGTGGCGTCAGACTTATTCCACTACCGACGTCGTCTACACATCGGCATGGACTACGTCGAGAATAAAGAGGATGTCGACATCTTAATACGCTTTGCTATTTTTGCTGATGATCTGTGGCGTCAAGAATTCTCTGATTTCTTGTAG

Coding sequence (CDS)

ATGACGTCGAGGAAAACTTCTCTCGATGTGTCATCGGGATTGCCCTTTCCCCGATATGCGGAGGTGGCGTCAGACTTATTCCACTACCGACGTCGTCTACACATCGGCATGGACTACGTCGAGAATAAAGAGGATGTCGACATCTTAATACGCTTTGCTATTTTTGCTGATGATCTGTGGCGTCAAGAATTCTCTGATTTCTTGTAG

Protein sequence

MTSRKTSLDVSSGLPFPRYAEVASDLFHYRRRLHIGMDYVENKEDVDILIRFAIFADDLWRQEFSDFL*
Homology
[Close]
BLAST of Csa3G219170 vs. TrEMBL
Match: A0A0A0LAC5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G219170 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.5e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MTSRKTSLDVSSGLPFPRYAEVASDLFHYRRRLHIGMDYVENKEDVDILIRFAIFADDLW 60
          MTSRKTSLDVSSGLPFPRYAEVASDLFHYRRRLHIGMDYVENKEDVDILIRFAIFADDLW
Sbjct: 1  MTSRKTSLDVSSGLPFPRYAEVASDLFHYRRRLHIGMDYVENKEDVDILIRFAIFADDLW 60

Query: 61 RQEFSDFL 69
          RQEFSDFL
Sbjct: 61 RQEFSDFL 68

[Close]
BLAST of Csa3G219170 vs. NCBI nr
Match: gi|700202449|gb|KGN57582.1| (hypothetical protein Csa_3G219170 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 8.0e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MTSRKTSLDVSSGLPFPRYAEVASDLFHYRRRLHIGMDYVENKEDVDILIRFAIFADDLW 60
          MTSRKTSLDVSSGLPFPRYAEVASDLFHYRRRLHIGMDYVENKEDVDILIRFAIFADDLW
Sbjct: 1  MTSRKTSLDVSSGLPFPRYAEVASDLFHYRRRLHIGMDYVENKEDVDILIRFAIFADDLW 60

Query: 61 RQEFSDFL 69
          RQEFSDFL
Sbjct: 61 RQEFSDFL 68

The following BLAST results are available for this feature:
BLAST of Csa3G219170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAC5_CUCSA5.5e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G219170 PE=4 SV=1[more]
BLAST of Csa3G219170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202449|gb|KGN57582.1|8.0e-31100.00hypothetical protein Csa_3G219170 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G219170.1Csa3G219170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G219170CSPI03G18950Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G219170Watermelon (97103) v2cuwmbB215
Csa3G219170Wax gourdcuwgoB283
Csa3G219170Cucumber (Gy14) v1cgycuB003
Csa3G219170Cucurbita maxima (Rimu)cmacuB320
Csa3G219170Cucurbita maxima (Rimu)cmacuB697
Csa3G219170Cucurbita moschata (Rifu)cmocuB307
Csa3G219170Cucurbita moschata (Rifu)cmocuB687
Csa3G219170Melon (DHL92) v3.5.1cumeB166
Csa3G219170Watermelon (Charleston Gray)cuwcgB230
Csa3G219170Watermelon (97103) v1cuwmB243
Csa3G219170Cucurbita pepo (Zucchini)cpecuB205
Csa3G219170Cucurbita pepo (Zucchini)cpecuB389
Csa3G219170Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G219170Cucumber (Gy14) v2cgybcuB109
Csa3G219170Melon (DHL92) v3.6.1cumedB238
Csa3G219170Silver-seed gourdcarcuB0064
Csa3G219170Silver-seed gourdcarcuB0065
Csa3G219170Silver-seed gourdcarcuB0675