Csa3G203770 (gene) Cucumber (Chinese Long) v2

NameCsa3G203770
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionOvate family protein; contains IPR006458 (Ovate protein family, C-terminal)
LocationChr3 : 13934510 .. 13934734 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACAAATTCCAAAAGTGCAAACAGATTCCAAAAGAAGAGTAAAATAAAAGTTTATCAAAACTCGATGGTTCAAATGCAACATGTGATTGTGATATACTCGAAGGAAGATTTGAGAGGGCTTCTTCGGTGTTTCTTGCAATTGAATTCTCCTTCTCACCATGGAATTATAGTTAGGGCTTTTTCTGAGATTGGGCAGCAAGTTGTGAAGTTTTCCTTGTAA

mRNA sequence

ATGAAAACAAATTCCAAAAGTGCAAACAGATTCCAAAAGAAGAGTAAAATAAAAGTTTATCAAAACTCGATGGTTCAAATGCAACATGTGATTGTGATATACTCGAAGGAAGATTTGAGAGGGCTTCTTCGGTGTTTCTTGCAATTGAATTCTCCTTCTCACCATGGAATTATAGTTAGGGCTTTTTCTGAGATTGGGCAGCAAGTTGTGAAGTTTTCCTTGTAA

Coding sequence (CDS)

ATGAAAACAAATTCCAAAAGTGCAAACAGATTCCAAAAGAAGAGTAAAATAAAAGTTTATCAAAACTCGATGGTTCAAATGCAACATGTGATTGTGATATACTCGAAGGAAGATTTGAGAGGGCTTCTTCGGTGTTTCTTGCAATTGAATTCTCCTTCTCACCATGGAATTATAGTTAGGGCTTTTTCTGAGATTGGGCAGCAAGTTGTGAAGTTTTCCTTGTAA

Protein sequence

MKTNSKSANRFQKKSKIKVYQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIGQQVVKFSL*
BLAST of Csa3G203770 vs. Swiss-Prot
Match: OFP6_ARATH (Transcription repressor OFP6 OS=Arabidopsis thaliana GN=OFP6 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.1e-09
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1

Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIGQQV 70
           ++ SM+QM     IYSK++LR LL+CFL LNS  HHGIIVRAFSEI + V
Sbjct: 81  FRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFSEIWEDV 130

BLAST of Csa3G203770 vs. TrEMBL
Match: A0A0A0LA93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G203770 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.4e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1

Query: 1  MKTNSKSANRFQKKSKIKVYQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVR 60
          MKTNSKSANRFQKKSKIKVYQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVR
Sbjct: 1  MKTNSKSANRFQKKSKIKVYQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVR 60

Query: 61 AFSEIGQQVVKFSL 75
          AFSEIGQQVVKFSL
Sbjct: 61 AFSEIGQQVVKFSL 74

BLAST of Csa3G203770 vs. TrEMBL
Match: A0A0A0KKL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454395 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-11
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 1

Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIGQQV 70
           +++SMVQM     IYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI   V
Sbjct: 97  FRHSMVQMILENEIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIWDSV 146

BLAST of Csa3G203770 vs. TrEMBL
Match: K7LHZ6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-08
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1

Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI 66
           +++SM+QM     IYSKEDLR LL CFLQLNSP HHG+IVRAF+EI
Sbjct: 203 FRHSMLQMILENEIYSKEDLRELLNCFLQLNSPDHHGVIVRAFTEI 248

BLAST of Csa3G203770 vs. TrEMBL
Match: A0A0R0HQM9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G077800 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-08
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1

Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI 66
           +++SM+QM     IYSKEDLR LL CFLQLNSP HHG+IVRAF+EI
Sbjct: 106 FRHSMLQMILENEIYSKEDLRELLNCFLQLNSPDHHGVIVRAFTEI 151

BLAST of Csa3G203770 vs. TrEMBL
Match: A0A0B2PHA8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_037043 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-08
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1

Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI 66
           +++SM+QM     IYSKEDLR LL CFLQLNSP HHG+IVRAF+EI
Sbjct: 68  FRHSMLQMILENEIYSKEDLRELLNCFLQLNSPDHHGVIVRAFTEI 113

BLAST of Csa3G203770 vs. TAIR10
Match: AT2G36026.1 (AT2G36026.1 Ovate family protein)

HSP 1 Score: 61.2 bits (147), Expect = 3.1e-10
Identity = 30/46 (65.22%), Postives = 32/46 (69.57%), Query Frame = 1

Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI 66
           ++ SM+QM     IYSK DLR LL CFL LN P HHGII+RAFSEI
Sbjct: 101 FRQSMLQMILENEIYSKNDLRELLHCFLSLNEPYHHGIIIRAFSEI 146

BLAST of Csa3G203770 vs. TAIR10
Match: AT3G52525.1 (AT3G52525.1 ovate family protein 6)

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-10
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1

Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIGQQV 70
           ++ SM+QM     IYSK++LR LL+CFL LNS  HHGIIVRAFSEI + V
Sbjct: 81  FRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFSEIWEDV 130

BLAST of Csa3G203770 vs. NCBI nr
Match: gi|700202389|gb|KGN57522.1| (hypothetical protein Csa_3G203770 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 9.2e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1

Query: 1  MKTNSKSANRFQKKSKIKVYQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVR 60
          MKTNSKSANRFQKKSKIKVYQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVR
Sbjct: 1  MKTNSKSANRFQKKSKIKVYQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVR 60

Query: 61 AFSEIGQQVVKFSL 75
          AFSEIGQQVVKFSL
Sbjct: 61 AFSEIGQQVVKFSL 74

BLAST of Csa3G203770 vs. NCBI nr
Match: gi|659125284|ref|XP_008462608.1| (PREDICTED: uncharacterized protein LOC103500926 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 1

Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIGQQV 70
           +++SMVQM     IYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI   V
Sbjct: 90  FRHSMVQMILENEIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIWDSV 139

BLAST of Csa3G203770 vs. NCBI nr
Match: gi|778717600|ref|XP_011657722.1| (PREDICTED: transcription repressor OFP6-like [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 1

Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIGQQV 70
           +++SMVQM     IYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI   V
Sbjct: 97  FRHSMVQMILENEIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIWDSV 146

BLAST of Csa3G203770 vs. NCBI nr
Match: gi|356534528|ref|XP_003535805.1| (PREDICTED: transcription repressor OFP6-like [Glycine max])

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-08
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1

Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI 66
           +++SM+QM     IYSKEDLR LL CFLQLNSP HHG+IVRAF+EI
Sbjct: 106 FRHSMLQMILENEIYSKEDLRELLNCFLQLNSPDHHGVIVRAFTEI 151

BLAST of Csa3G203770 vs. NCBI nr
Match: gi|734338258|gb|KHN08721.1| (hypothetical protein glysoja_037043 [Glycine soja])

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-08
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1

Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI 66
           +++SM+QM     IYSKEDLR LL CFLQLNSP HHG+IVRAF+EI
Sbjct: 68  FRHSMLQMILENEIYSKEDLRELLNCFLQLNSPDHHGVIVRAFTEI 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
OFP6_ARATH7.1e-0962.00Transcription repressor OFP6 OS=Arabidopsis thaliana GN=OFP6 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LA93_CUCSA6.4e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G203770 PE=4 SV=1[more]
A0A0A0KKL0_CUCSA1.4e-1178.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454395 PE=4 SV=1[more]
K7LHZ6_SOYBN1.4e-0869.57Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0R0HQM9_SOYBN1.4e-0869.57Uncharacterized protein OS=Glycine max GN=GLYMA_10G077800 PE=4 SV=1[more]
A0A0B2PHA8_GLYSO1.4e-0869.57Uncharacterized protein OS=Glycine soja GN=glysoja_037043 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G36026.13.1e-1065.22 Ovate family protein[more]
AT3G52525.14.0e-1062.00 ovate family protein 6[more]
Match NameE-valueIdentityDescription
gi|700202389|gb|KGN57522.1|9.2e-33100.00hypothetical protein Csa_3G203770 [Cucumis sativus][more]
gi|659125284|ref|XP_008462608.1|2.0e-1178.00PREDICTED: uncharacterized protein LOC103500926 [Cucumis melo][more]
gi|778717600|ref|XP_011657722.1|2.0e-1178.00PREDICTED: transcription repressor OFP6-like [Cucumis sativus][more]
gi|356534528|ref|XP_003535805.1|2.1e-0869.57PREDICTED: transcription repressor OFP6-like [Glycine max][more]
gi|734338258|gb|KHN08721.1|2.1e-0869.57hypothetical protein glysoja_037043 [Glycine soja][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006458Ovate_C
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G203770.1Csa3G203770.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006458Ovate protein family, C-terminalPFAMPF04844Ovatecoord: 21..66
score: 4.5
IPR006458Ovate protein family, C-terminalPROFILEPS51754OVATEcoord: 8..68
score: 11
NoneNo IPR availablePANTHERPTHR33057FAMILY NOT NAMEDcoord: 20..65
score: 2.7

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G203770Cucurbita pepo (Zucchini)cpecuB205
Csa3G203770Cucurbita pepo (Zucchini)cpecuB242
Csa3G203770Cucurbita pepo (Zucchini)cpecuB389
Csa3G203770Bottle gourd (USVL1VR-Ls)culsiB189
Csa3G203770Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G203770Cucumber (Gy14) v2cgybcuB109
Csa3G203770Cucumber (Gy14) v2cgybcuB307
Csa3G203770Melon (DHL92) v3.6.1cumedB181
Csa3G203770Melon (DHL92) v3.6.1cumedB238
Csa3G203770Melon (DHL92) v3.6.1cumedB255
Csa3G203770Silver-seed gourdcarcuB0232
Csa3G203770Silver-seed gourdcarcuB0400
Csa3G203770Watermelon (97103) v2cuwmbB198
Csa3G203770Watermelon (97103) v2cuwmbB215
Csa3G203770Wax gourdcuwgoB283
Csa3G203770Wax gourdcuwgoB308
Csa3G203770Cucumber (Chinese Long) v2cucuB129
Csa3G203770Cucumber (Gy14) v1cgycuB320
Csa3G203770Cucumber (Gy14) v1cgycuB350
Csa3G203770Cucurbita maxima (Rimu)cmacuB128
Csa3G203770Cucurbita maxima (Rimu)cmacuB320
Csa3G203770Cucurbita maxima (Rimu)cmacuB513
Csa3G203770Cucurbita maxima (Rimu)cmacuB697
Csa3G203770Cucurbita moschata (Rifu)cmocuB117
Csa3G203770Cucurbita moschata (Rifu)cmocuB307
Csa3G203770Cucurbita moschata (Rifu)cmocuB504
Csa3G203770Cucurbita moschata (Rifu)cmocuB687
Csa3G203770Melon (DHL92) v3.5.1cumeB166
Csa3G203770Melon (DHL92) v3.5.1cumeB195
Csa3G203770Melon (DHL92) v3.5.1cumeB265
Csa3G203770Watermelon (Charleston Gray)cuwcgB211
Csa3G203770Watermelon (Charleston Gray)cuwcgB215
Csa3G203770Watermelon (Charleston Gray)cuwcgB230
Csa3G203770Watermelon (97103) v1cuwmB243
Csa3G203770Watermelon (97103) v1cuwmB270