Csa3G203770 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G203770
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ovate family protein; contains IPR006458 (Ovate protein family, C-terminal)
Location	Chr3 : 13934510 .. 13934734 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACAAATTCCAAAAGTGCAAACAGATTCCAAAAGAAGAGTAAAATAAAAGTTTATCAAAACTCGATGGTTCAAATGCAACATGTGATTGTGATATACTCGAAGGAAGATTTGAGAGGGCTTCTTCGGTGTTTCTTGCAATTGAATTCTCCTTCTCACCATGGAATTATAGTTAGGGCTTTTTCTGAGATTGGGCAGCAAGTTGTGAAGTTTTCCTTGTAA

mRNA sequence

ATGAAAACAAATTCCAAAAGTGCAAACAGATTCCAAAAGAAGAGTAAAATAAAAGTTTATCAAAACTCGATGGTTCAAATGCAACATGTGATTGTGATATACTCGAAGGAAGATTTGAGAGGGCTTCTTCGGTGTTTCTTGCAATTGAATTCTCCTTCTCACCATGGAATTATAGTTAGGGCTTTTTCTGAGATTGGGCAGCAAGTTGTGAAGTTTTCCTTGTAA

Coding sequence (CDS)

ATGAAAACAAATTCCAAAAGTGCAAACAGATTCCAAAAGAAGAGTAAAATAAAAGTTTATCAAAACTCGATGGTTCAAATGCAACATGTGATTGTGATATACTCGAAGGAAGATTTGAGAGGGCTTCTTCGGTGTTTCTTGCAATTGAATTCTCCTTCTCACCATGGAATTATAGTTAGGGCTTTTTCTGAGATTGGGCAGCAAGTTGTGAAGTTTTCCTTGTAA

Protein sequence

MKTNSKSANRFQKKSKIKVYQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIGQQVVKFSL*

Homology

[Close]

BLAST of Csa3G203770 vs. Swiss-Prot
Match: OFP6_ARATH (Transcription repressor OFP6 OS=Arabidopsis thaliana GN=OFP6 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.1e-09
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIGQQV 70
           ++ SM+QM     IYSK++LR LL+CFL LNS  HHGIIVRAFSEI + V
Sbjct: 81  FRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFSEIWEDV 130

[Close]

BLAST of Csa3G203770 vs. TrEMBL
Match: A0A0A0LA93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G203770 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.4e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MKTNSKSANRFQKKSKIKVYQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVR 60
          MKTNSKSANRFQKKSKIKVYQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVR
Sbjct: 1  MKTNSKSANRFQKKSKIKVYQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVR 60

Query: 61 AFSEIGQQVVKFSL 75
          AFSEIGQQVVKFSL
Sbjct: 61 AFSEIGQQVVKFSL 74

[Close]

BLAST of Csa3G203770 vs. TrEMBL
Match: A0A0A0KKL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454395 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-11
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 1


Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIGQQV 70
           +++SMVQM     IYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI   V
Sbjct: 97  FRHSMVQMILENEIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIWDSV 146

[Close]

BLAST of Csa3G203770 vs. TrEMBL
Match: K7LHZ6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-08
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI 66
           +++SM+QM     IYSKEDLR LL CFLQLNSP HHG+IVRAF+EI
Sbjct: 203 FRHSMLQMILENEIYSKEDLRELLNCFLQLNSPDHHGVIVRAFTEI 248

[Close]

BLAST of Csa3G203770 vs. TrEMBL
Match: A0A0R0HQM9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G077800 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-08
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI 66
           +++SM+QM     IYSKEDLR LL CFLQLNSP HHG+IVRAF+EI
Sbjct: 106 FRHSMLQMILENEIYSKEDLRELLNCFLQLNSPDHHGVIVRAFTEI 151

[Close]

BLAST of Csa3G203770 vs. TrEMBL
Match: A0A0B2PHA8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_037043 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-08
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI 66
           +++SM+QM     IYSKEDLR LL CFLQLNSP HHG+IVRAF+EI
Sbjct: 68  FRHSMLQMILENEIYSKEDLRELLNCFLQLNSPDHHGVIVRAFTEI 113

[Close]

BLAST of Csa3G203770 vs. TAIR10
Match: AT2G36026.1 (AT2G36026.1 Ovate family protein)

HSP 1 Score: 61.2 bits (147), Expect = 3.1e-10
Identity = 30/46 (65.22%), Postives = 32/46 (69.57%), Query Frame = 1


Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI 66
           ++ SM+QM     IYSK DLR LL CFL LN P HHGII+RAFSEI
Sbjct: 101 FRQSMLQMILENEIYSKNDLRELLHCFLSLNEPYHHGIIIRAFSEI 146

[Close]

BLAST of Csa3G203770 vs. TAIR10
Match: AT3G52525.1 (AT3G52525.1 ovate family protein 6)

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-10
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIGQQV 70
           ++ SM+QM     IYSK++LR LL+CFL LNS  HHGIIVRAFSEI + V
Sbjct: 81  FRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFSEIWEDV 130

[Close]

BLAST of Csa3G203770 vs. NCBI nr
Match: gi|700202389|gb|KGN57522.1| (hypothetical protein Csa_3G203770 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 9.2e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MKTNSKSANRFQKKSKIKVYQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVR 60
          MKTNSKSANRFQKKSKIKVYQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVR
Sbjct: 1  MKTNSKSANRFQKKSKIKVYQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVR 60

Query: 61 AFSEIGQQVVKFSL 75
          AFSEIGQQVVKFSL
Sbjct: 61 AFSEIGQQVVKFSL 74

[Close]

BLAST of Csa3G203770 vs. NCBI nr
Match: gi|659125284|ref|XP_008462608.1| (PREDICTED: uncharacterized protein LOC103500926 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 1


Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIGQQV 70
           +++SMVQM     IYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI   V
Sbjct: 90  FRHSMVQMILENEIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIWDSV 139

[Close]

BLAST of Csa3G203770 vs. NCBI nr
Match: gi|778717600|ref|XP_011657722.1| (PREDICTED: transcription repressor OFP6-like [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 1


Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIGQQV 70
           +++SMVQM     IYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI   V
Sbjct: 97  FRHSMVQMILENEIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEIWDSV 146

[Close]

BLAST of Csa3G203770 vs. NCBI nr
Match: gi|356534528|ref|XP_003535805.1| (PREDICTED: transcription repressor OFP6-like [Glycine max])

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-08
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI 66
           +++SM+QM     IYSKEDLR LL CFLQLNSP HHG+IVRAF+EI
Sbjct: 106 FRHSMLQMILENEIYSKEDLRELLNCFLQLNSPDHHGVIVRAFTEI 151

[Close]

BLAST of Csa3G203770 vs. NCBI nr
Match: gi|734338258|gb|KHN08721.1| (hypothetical protein glysoja_037043 [Glycine soja])

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-08
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 20  YQNSMVQMQHVIVIYSKEDLRGLLRCFLQLNSPSHHGIIVRAFSEI 66
           +++SM+QM     IYSKEDLR LL CFLQLNSP HHG+IVRAF+EI
Sbjct: 68  FRHSMLQMILENEIYSKEDLRELLNCFLQLNSPDHHGVIVRAFTEI 113

The following BLAST results are available for this feature:

BLAST of Csa3G203770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
OFP6_ARATH	7.1e-09	62.00	Transcription repressor OFP6 OS=Arabidopsis thaliana GN=OFP6 PE=1 SV=1	[more]

BLAST of Csa3G203770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA93_CUCSA	6.4e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G203770 PE=4 SV=1	[more]
A0A0A0KKL0_CUCSA	1.4e-11	78.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454395 PE=4 SV=1	[more]
K7LHZ6_SOYBN	1.4e-08	69.57	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0R0HQM9_SOYBN	1.4e-08	69.57	Uncharacterized protein OS=Glycine max GN=GLYMA_10G077800 PE=4 SV=1	[more]
A0A0B2PHA8_GLYSO	1.4e-08	69.57	Uncharacterized protein OS=Glycine soja GN=glysoja_037043 PE=4 SV=1	[more]

BLAST of Csa3G203770 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G36026.1	3.1e-10	65.22	Ovate family protein	[more]
AT3G52525.1	4.0e-10	62.00	ovate family protein 6	[more]

BLAST of Csa3G203770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202389\|gb\|KGN57522.1\|	9.2e-33	100.00	hypothetical protein Csa_3G203770 [Cucumis sativus]	[more]
gi\|659125284\|ref\|XP_008462608.1\|	2.0e-11	78.00	PREDICTED: uncharacterized protein LOC103500926 [Cucumis melo]	[more]
gi\|778717600\|ref\|XP_011657722.1\|	2.0e-11	78.00	PREDICTED: transcription repressor OFP6-like [Cucumis sativus]	[more]
gi\|356534528\|ref\|XP_003535805.1\|	2.1e-08	69.57	PREDICTED: transcription repressor OFP6-like [Glycine max]	[more]
gi\|734338258\|gb\|KHN08721.1\|	2.1e-08	69.57	hypothetical protein glysoja_037043 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006458	Ovate_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G203770.1	Csa3G203770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006458	Ovate protein family, C-terminal	PFAM	PF04844	Ovate	coord: 21..66 score: 4.5
IPR006458	Ovate protein family, C-terminal	PROFILE	PS51754	OVATE	coord: 8..68 score: 11
None	No IPR available	PANTHER	PTHR33057	FAMILY NOT NAMED	coord: 20..65 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G203770	Silver-seed gourd	carcuB0232
Csa3G203770	Silver-seed gourd	carcuB0400
Csa3G203770	Watermelon (97103) v2	cuwmbB198
Csa3G203770	Watermelon (97103) v2	cuwmbB215
Csa3G203770	Wax gourd	cuwgoB283
Csa3G203770	Wax gourd	cuwgoB308
Csa3G203770	Cucumber (Chinese Long) v2	cucuB129
Csa3G203770	Cucumber (Gy14) v1	cgycuB320
Csa3G203770	Cucumber (Gy14) v1	cgycuB350
Csa3G203770	Cucurbita maxima (Rimu)	cmacuB128
Csa3G203770	Cucurbita maxima (Rimu)	cmacuB320
Csa3G203770	Cucurbita maxima (Rimu)	cmacuB513
Csa3G203770	Cucurbita maxima (Rimu)	cmacuB697
Csa3G203770	Cucurbita moschata (Rifu)	cmocuB117
Csa3G203770	Cucurbita moschata (Rifu)	cmocuB307
Csa3G203770	Cucurbita moschata (Rifu)	cmocuB504
Csa3G203770	Cucurbita moschata (Rifu)	cmocuB687
Csa3G203770	Melon (DHL92) v3.5.1	cumeB166
Csa3G203770	Melon (DHL92) v3.5.1	cumeB195
Csa3G203770	Melon (DHL92) v3.5.1	cumeB265
Csa3G203770	Watermelon (Charleston Gray)	cuwcgB211
Csa3G203770	Watermelon (Charleston Gray)	cuwcgB215
Csa3G203770	Watermelon (Charleston Gray)	cuwcgB230
Csa3G203770	Watermelon (97103) v1	cuwmB243
Csa3G203770	Watermelon (97103) v1	cuwmB270
Csa3G203770	Cucurbita pepo (Zucchini)	cpecuB205
Csa3G203770	Cucurbita pepo (Zucchini)	cpecuB242
Csa3G203770	Cucurbita pepo (Zucchini)	cpecuB389
Csa3G203770	Bottle gourd (USVL1VR-Ls)	culsiB189
Csa3G203770	Bottle gourd (USVL1VR-Ls)	culsiB211
Csa3G203770	Cucumber (Gy14) v2	cgybcuB109
Csa3G203770	Cucumber (Gy14) v2	cgybcuB307
Csa3G203770	Melon (DHL92) v3.6.1	cumedB181
Csa3G203770	Melon (DHL92) v3.6.1	cumedB238
Csa3G203770	Melon (DHL92) v3.6.1	cumedB255