Csa3G199030 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G199030
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 13650931 .. 13651883 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTTGTGTTTATTCTTTCATAGCAGTTACTGGATTTACAATTATGTTATGAAATTTTTCTTTCCATTACCTTTCCTGTACCTTCAACTCGAGGATTATCGATTTGGACACAGATCAACAGGGAGAAATAATACCTCATTCTTAGAAGATGAAGTTTGCAATATGAATGTGTCAACACTTCATTGATATATACCTTTCGCACAAGGTTGTGTGTATTTCTATACATCAATGCTTTCAATATGTGGACAACTAGTATACACATGTATTTTCATTTTCCATATATTCAGCTGTGAGTGAAGTATATTTGTTCATAGGGACATGGAACTTTTGAAGCACCAATTAGATTAAAGTATGTCACGGTTTAGAATGGAACAGTTGTAATCACATATCCAATAATAGACACGAAGTAGAATCATGTAAGGTTTTAGATGCTTGTCTATATTCTTAAGCTTTCCAAGAGTTATAAAAATTTGATCGGTGTTGAGTGGCTGTTGTAGCTTGTGCTCATATATGAAATCCATGTTGTAGGTGGGGAGCTTCAATAGCAACAGGCACATGGGATTGCCAAACTCTGATTTGATTGACACTAACATATCATATGTTTTAAAGGCAGGTTTATGGTTTCATTTGGTCCACAATGGGAATGCAATTCATGGATGGCTGCTTGCAAGAGCAAGCATTTGGAGATCTCTGTTGATTTTTATGGCCCATACCCTCAAGGCCAAGCTGGTGTTATTGTTCCCTACAACTGGACTGACCCTGATCCAAAATATTACCTGCTATTCAGCAATGGGGACCTTCAAACCCCATCACTTATTCTCTCTTCCTTGATTGGATATGATGAACAGGGTGAGGAAGGAGATGGTCTCTCGAGTCTCGATCTCTTCTCTGACCCCATCTAAGTTTTTAATGTTCGTTTGTTTGCAGCAACGCTTCTTAGAGAATGAGGTGA

mRNA sequence

ATGGTTTCATTTGGTCCACAATGGGAATGCAATTCATGGATGGCTGCTTGCAAGAGCAAGCATTTGGAGATCTCTGTTGATTTTTATGGCCCATACCCTCAAGGCCAAGCTGGTGTTATTGTTCCCTACAACTGGACTGACCCTGATCCAAAATATTACCTGCTATTCAGCAATGGGGACCTTCAAACCCCATCACTTATTCTCTCTTCCTTGATTGGATATGATGAACAGGGTGAGGAAGGAGATGGTCTCTCGAGTCTCGATCTCTTCTCTGACCCCATCTAA

Coding sequence (CDS)

ATGGTTTCATTTGGTCCACAATGGGAATGCAATTCATGGATGGCTGCTTGCAAGAGCAAGCATTTGGAGATCTCTGTTGATTTTTATGGCCCATACCCTCAAGGCCAAGCTGGTGTTATTGTTCCCTACAACTGGACTGACCCTGATCCAAAATATTACCTGCTATTCAGCAATGGGGACCTTCAAACCCCATCACTTATTCTCTCTTCCTTGATTGGATATGATGAACAGGGTGAGGAAGGAGATGGTCTCTCGAGTCTCGATCTCTTCTCTGACCCCATCTAA

Protein sequence

MVSFGPQWECNSWMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDPDPKYYLLFSNGDLQTPSLILSSLIGYDEQGEEGDGLSSLDLFSDPI*
Homology
[Close]
BLAST of Csa3G199030 vs. TrEMBL
Match: A0A0A0L6A7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199030 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 7.3e-50
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MVSFGPQWECNSWMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDPDPKYYLLFSNGD 60
          MVSFGPQWECNSWMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDPDPKYYLLFSNGD
Sbjct: 1  MVSFGPQWECNSWMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDPDPKYYLLFSNGD 60

Query: 61 LQTPSLILSSLIGYDEQGEEGDGLSSLDLFSDPI 95
          LQTPSLILSSLIGYDEQGEEGDGLSSLDLFSDPI
Sbjct: 61 LQTPSLILSSLIGYDEQGEEGDGLSSLDLFSDPI 94

[Close]
BLAST of Csa3G199030 vs. NCBI nr
Match: gi|700202357|gb|KGN57490.1| (hypothetical protein Csa_3G199030 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-49
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MVSFGPQWECNSWMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDPDPKYYLLFSNGD 60
          MVSFGPQWECNSWMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDPDPKYYLLFSNGD
Sbjct: 1  MVSFGPQWECNSWMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDPDPKYYLLFSNGD 60

Query: 61 LQTPSLILSSLIGYDEQGEEGDGLSSLDLFSDPI 95
          LQTPSLILSSLIGYDEQGEEGDGLSSLDLFSDPI
Sbjct: 61 LQTPSLILSSLIGYDEQGEEGDGLSSLDLFSDPI 94

The following BLAST results are available for this feature:
BLAST of Csa3G199030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6A7_CUCSA7.3e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199030 PE=4 SV=1[more]
BLAST of Csa3G199030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202357|gb|KGN57490.1|1.1e-49100.00hypothetical protein Csa_3G199030 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU106530cucumber EST collection version 3.0transcribed_cluster
CU131324cucumber EST collection version 3.0transcribed_cluster
CU146583cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G199030.1Csa3G199030.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU146583CU146583transcribed_cluster
CU106530CU106530transcribed_cluster
CU131324CU131324transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G199030CSPI03G18070Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G199030Watermelon (97103) v2cuwmbB198
Csa3G199030Watermelon (97103) v2cuwmbB215
Csa3G199030Wax gourdcuwgoB283
Csa3G199030Cucumber (Chinese Long) v2cucuB129
Csa3G199030Cucumber (Gy14) v1cgycuB132
Csa3G199030Cucumber (Gy14) v1cgycuB320
Csa3G199030Cucurbita maxima (Rimu)cmacuB320
Csa3G199030Cucurbita maxima (Rimu)cmacuB513
Csa3G199030Cucurbita maxima (Rimu)cmacuB697
Csa3G199030Cucurbita moschata (Rifu)cmocuB307
Csa3G199030Cucurbita moschata (Rifu)cmocuB504
Csa3G199030Cucurbita moschata (Rifu)cmocuB687
Csa3G199030Melon (DHL92) v3.5.1cumeB166
Csa3G199030Melon (DHL92) v3.5.1cumeB195
Csa3G199030Melon (DHL92) v3.5.1cumeB265
Csa3G199030Watermelon (Charleston Gray)cuwcgB211
Csa3G199030Watermelon (Charleston Gray)cuwcgB215
Csa3G199030Watermelon (Charleston Gray)cuwcgB230
Csa3G199030Watermelon (97103) v1cuwmB243
Csa3G199030Watermelon (97103) v1cuwmB270
Csa3G199030Cucurbita pepo (Zucchini)cpecuB205
Csa3G199030Cucurbita pepo (Zucchini)cpecuB389
Csa3G199030Bottle gourd (USVL1VR-Ls)culsiB189
Csa3G199030Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G199030Cucumber (Gy14) v2cgybcuB109
Csa3G199030Melon (DHL92) v3.6.1cumedB181
Csa3G199030Melon (DHL92) v3.6.1cumedB238
Csa3G199030Melon (DHL92) v3.6.1cumedB255
Csa3G199030Silver-seed gourdcarcuB0320
Csa3G199030Silver-seed gourdcarcuB0400