Csa3G193880 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G193880
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 13436530 .. 13436905 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAACAAATCCACCACACAGTGAAGTTAAGTCAATTTCTGCATAACACTATGTACAGTTTGTGTAACGACCCAACTTTTCGGAGACAGAGACGATTAGGACGGGGCACGGCGACGCAGATCTGGGTCAGCCGCCGCGTGACCTCTGCCCAGCACCGCCGCGCGACCTCTGTCTCCGCGTCGTTACCCAGATCTGCGTCGCCGTGCCCCGTCCTAATCGTCTCTGTCTCCGAAAAGTTGGGTCGTTACACAAACTGTACATAGTGTTATGCAGAAATTGACTTAACTTCACTGTGTGGTGGATTTGTTGCTTCATGACTTGCAGAGTTTGTTGGCCTCATCTGCTGATGATTCTTTTGTGCCTCCCTCGTAG

mRNA sequence

ATGAAGCAACAAATCCACCACACAGTGAAGTTAAGTCAATTTCTGCATAACACTATGTACAGTTTGTGTAACGACCCAACTTTTCGGAGACAGAGACGATTAGGACGGGGCACGGCGACGCAGATCTGGGTCAGCCGCCGCGTGACCTCTGCCCAGCACCGCCGCGCGACCTCTGTCTCCGCGTCGTTACCCAGATCTGCGTCGCCGTGCCCCGTCCTAATCGTCTCTAGTTTGTTGGCCTCATCTGCTGATGATTCTTTTGTGCCTCCCTCGTAG

Coding sequence (CDS)

ATGAAGCAACAAATCCACCACACAGTGAAGTTAAGTCAATTTCTGCATAACACTATGTACAGTTTGTGTAACGACCCAACTTTTCGGAGACAGAGACGATTAGGACGGGGCACGGCGACGCAGATCTGGGTCAGCCGCCGCGTGACCTCTGCCCAGCACCGCCGCGCGACCTCTGTCTCCGCGTCGTTACCCAGATCTGCGTCGCCGTGCCCCGTCCTAATCGTCTCTAGTTTGTTGGCCTCATCTGCTGATGATTCTTTTGTGCCTCCCTCGTAG

Protein sequence

MKQQIHHTVKLSQFLHNTMYSLCNDPTFRRQRRLGRGTATQIWVSRRVTSAQHRRATSVSASLPRSASPCPVLIVSSLLASSADDSFVPPS*
Homology
[Close]
BLAST of Csa3G193880 vs. TrEMBL
Match: A0A0A0L680_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G193880 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MKQQIHHTVKLSQFLHNTMYSLCNDPTFRRQRRLGRGTATQIWVSRRVTSAQHRRATSVS 60
          MKQQIHHTVKLSQFLHNTMYSLCNDPTFRRQRRLGRGTATQIWVSRRVTSAQHRRATSVS
Sbjct: 1  MKQQIHHTVKLSQFLHNTMYSLCNDPTFRRQRRLGRGTATQIWVSRRVTSAQHRRATSVS 60

Query: 61 ASLPRSASPCPVLIVSSLLASSADDSFVPPS 92
          ASLPRSASPCPVLIVSSLLASSADDSFVPPS
Sbjct: 61 ASLPRSASPCPVLIVSSLLASSADDSFVPPS 91

[Close]
BLAST of Csa3G193880 vs. NCBI nr
Match: gi|700202337|gb|KGN57470.1| (hypothetical protein Csa_3G193880 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MKQQIHHTVKLSQFLHNTMYSLCNDPTFRRQRRLGRGTATQIWVSRRVTSAQHRRATSVS 60
          MKQQIHHTVKLSQFLHNTMYSLCNDPTFRRQRRLGRGTATQIWVSRRVTSAQHRRATSVS
Sbjct: 1  MKQQIHHTVKLSQFLHNTMYSLCNDPTFRRQRRLGRGTATQIWVSRRVTSAQHRRATSVS 60

Query: 61 ASLPRSASPCPVLIVSSLLASSADDSFVPPS 92
          ASLPRSASPCPVLIVSSLLASSADDSFVPPS
Sbjct: 61 ASLPRSASPCPVLIVSSLLASSADDSFVPPS 91

The following BLAST results are available for this feature:
BLAST of Csa3G193880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L680_CUCSA1.0e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G193880 PE=4 SV=1[more]
BLAST of Csa3G193880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202337|gb|KGN57470.1|1.4e-43100.00hypothetical protein Csa_3G193880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU140591cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G193880.1Csa3G193880.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU140591CU140591transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G193880Cucurbita pepo (Zucchini)cpecuB550
Csa3G193880Cucurbita pepo (Zucchini)cpecuB603
Csa3G193880Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G193880Cucumber (Gy14) v2cgybcuB109
Csa3G193880Melon (DHL92) v3.6.1cumedB238
Csa3G193880Silver-seed gourdcarcuB0196
Csa3G193880Silver-seed gourdcarcuB0781
Csa3G193880Watermelon (97103) v2cuwmbB215
Csa3G193880Wax gourdcuwgoB283
Csa3G193880Cucumber (Gy14) v1cgycuB132
Csa3G193880Cucurbita maxima (Rimu)cmacuB245
Csa3G193880Cucurbita maxima (Rimu)cmacuB458
Csa3G193880Cucurbita moschata (Rifu)cmocuB232
Csa3G193880Cucurbita moschata (Rifu)cmocuB445
Csa3G193880Watermelon (Charleston Gray)cuwcgB230
Csa3G193880Watermelon (97103) v1cuwmB243