Csa3G178540 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G178540
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 12141320 .. 12141686 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTGCGGAATTTCGCTCAGAAGAAAACGTGTCGCGGTTTTCCTCTGTGGGGGAACTTTCCGAGCCTTGGTTCTTCGTGGAGCAGCAAGAAAAAAAGAGAAACTCTCGGGCAACTCTAATTCTACGGGCAGCTACACAGGCTGCCCCACCCGTCTACATCCGACCTCTATTTCATGTTGTGAAGACACGTGGTACTCATGACGATCCTCTTTCCCTAATTCCTTTTCCCTTTCCAGTCAATTTCTCGTATCGCGAGAATTTTCCCCCGTGGACACGTGTCAAAAGTGCTCGAAAAGTGGAGGCCCATCTTGCCAGGACGATACTAGTAGATCAATCAGAAACTTCCACGCCAGGCTTGTCATGA

mRNA sequence

ATGGTGTGCGGAATTTCGCTCAGAAGAAAACGTGTCGCGGTTTTCCTCTGTGGGGGAACTTTCCGAGCCTTGGTTCTTCGTGGAGCAGCAAGAAAAAAAGAGAAACTCTCGGGCAACTCTAATTCTACGGGCAGCTACACAGGCTGCCCCACCCGTCTACATCCGACCTCTATTTCATGTTGTGAAGACACGTGTGCTCGAAAAGTGGAGGCCCATCTTGCCAGGACGATACTAGTAGATCAATCAGAAACTTCCACGCCAGGCTTGTCATGA

Coding sequence (CDS)

ATGGTGTGCGGAATTTCGCTCAGAAGAAAACGTGTCGCGGTTTTCCTCTGTGGGGGAACTTTCCGAGCCTTGGTTCTTCGTGGAGCAGCAAGAAAAAAAGAGAAACTCTCGGGCAACTCTAATTCTACGGGCAGCTACACAGGCTGCCCCACCCGTCTACATCCGACCTCTATTTCATGTTGTGAAGACACGTGTGCTCGAAAAGTGGAGGCCCATCTTGCCAGGACGATACTAGTAGATCAATCAGAAACTTCCACGCCAGGCTTGTCATGA

Protein sequence

MVCGISLRRKRVAVFLCGGTFRALVLRGAARKKEKLSGNSNSTGSYTGCPTRLHPTSISCCEDTCARKVEAHLARTILVDQSETSTPGLS*
Homology
[Close]
BLAST of Csa3G178540 vs. TrEMBL
Match: A0A0A0L6B1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G178540 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 5.8e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MVCGISLRRKRVAVFLCGGTFRALVLRGAARKKEKLSGNSNSTGSYTGCPTRLHPTSISC 60
          MVCGISLRRKRVAVFLCGGTFRALVLRGAARKKEKLSGNSNSTGSYTGCPTRLHPTSISC
Sbjct: 1  MVCGISLRRKRVAVFLCGGTFRALVLRGAARKKEKLSGNSNSTGSYTGCPTRLHPTSISC 60

Query: 61 CEDTCARKVEAHLARTILVDQSETSTPGLS 91
          CEDTCARKVEAHLARTILVDQSETSTPGLS
Sbjct: 61 CEDTCARKVEAHLARTILVDQSETSTPGLS 90

[Close]
BLAST of Csa3G178540 vs. NCBI nr
Match: gi|700202180|gb|KGN57313.1| (hypothetical protein Csa_3G178540 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 8.3e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MVCGISLRRKRVAVFLCGGTFRALVLRGAARKKEKLSGNSNSTGSYTGCPTRLHPTSISC 60
          MVCGISLRRKRVAVFLCGGTFRALVLRGAARKKEKLSGNSNSTGSYTGCPTRLHPTSISC
Sbjct: 1  MVCGISLRRKRVAVFLCGGTFRALVLRGAARKKEKLSGNSNSTGSYTGCPTRLHPTSISC 60

Query: 61 CEDTCARKVEAHLARTILVDQSETSTPGLS 91
          CEDTCARKVEAHLARTILVDQSETSTPGLS
Sbjct: 61 CEDTCARKVEAHLARTILVDQSETSTPGLS 90

The following BLAST results are available for this feature:
BLAST of Csa3G178540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6B1_CUCSA5.8e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G178540 PE=4 SV=1[more]
BLAST of Csa3G178540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202180|gb|KGN57313.1|8.3e-44100.00hypothetical protein Csa_3G178540 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G178540.1Csa3G178540.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G178540Cucumber (Gy14) v1cgycuB366
Csa3G178540Cucumber (Gy14) v1cgycuB430
Csa3G178540Cucurbita maxima (Rimu)cmacuB283
Csa3G178540Cucurbita maxima (Rimu)cmacuB329
Csa3G178540Cucurbita maxima (Rimu)cmacuB408
Csa3G178540Cucurbita maxima (Rimu)cmacuB596
Csa3G178540Cucurbita maxima (Rimu)cmacuB603
Csa3G178540Cucurbita moschata (Rifu)cmocuB269
Csa3G178540Cucurbita moschata (Rifu)cmocuB317
Csa3G178540Cucurbita moschata (Rifu)cmocuB398
Csa3G178540Cucurbita moschata (Rifu)cmocuB583
Csa3G178540Melon (DHL92) v3.5.1cumeB173
Csa3G178540Melon (DHL92) v3.5.1cumeB236
Csa3G178540Watermelon (Charleston Gray)cuwcgB208
Csa3G178540Watermelon (Charleston Gray)cuwcgB222
Csa3G178540Watermelon (Charleston Gray)cuwcgB250
Csa3G178540Watermelon (97103) v1cuwmB233
Csa3G178540Watermelon (97103) v1cuwmB262
Csa3G178540Cucurbita pepo (Zucchini)cpecuB039
Csa3G178540Cucurbita pepo (Zucchini)cpecuB171
Csa3G178540Cucurbita pepo (Zucchini)cpecuB214
Csa3G178540Cucurbita pepo (Zucchini)cpecuB719
Csa3G178540Cucurbita pepo (Zucchini)cpecuB725
Csa3G178540Bottle gourd (USVL1VR-Ls)culsiB156
Csa3G178540Bottle gourd (USVL1VR-Ls)culsiB210
Csa3G178540Cucumber (Gy14) v2cgybcuB109
Csa3G178540Cucumber (Gy14) v2cgybcuB213
Csa3G178540Melon (DHL92) v3.6.1cumedB154
Csa3G178540Melon (DHL92) v3.6.1cumedB223
Csa3G178540Silver-seed gourdcarcuB0107
Csa3G178540Silver-seed gourdcarcuB0730
Csa3G178540Silver-seed gourdcarcuB0885
Csa3G178540Silver-seed gourdcarcuB0933
Csa3G178540Silver-seed gourdcarcuB0952
Csa3G178540Watermelon (97103) v2cuwmbB204
Csa3G178540Watermelon (97103) v2cuwmbB179
Csa3G178540Wax gourdcuwgoB286
Csa3G178540Cucumber (Chinese Long) v2cucuB102
Csa3G178540Cucumber (Chinese Long) v2cucuB125