Csa3G176880 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G176880
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 12026230 .. 12027127 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCATTTCCACCGCTCTTTCAACGGTCCCTTTTCCTTTTAACGTCTCTCTCCCCCTTCAAATTCCCCTCTCGCATCGCTTTCTTCCAAGCTTCACATTTCGAGAAAACCACTTTTTCCCAGGAAAATTCCATCCCTTCATTCTTCCCCTCTCAAATCACTTCTCTTACCCCAAGCTTCACCACATTGATTCTACTTCAGGTTCACTTTCAGATCCACACTCTCTCTTTTTTTTTTTCGATTTCTTTTTTAATTTCTTGATAATCTGGCATGACCCACTGTGTTAGTTCGCTTCAATTATGTTGTTTCTTAGTTCGAACACTATGAGCTGCTTTGTACATAATTTCCCCCCCATGTATTTGGCCTGGAATTTTGTTGGATTATGATGAATTTGAACATTTCCATTTGGGTTATTAGCAAAGATTTAACCACATTGTAGATATATGAGTGGGAAATGGAGTTTTGTGATGGTGGTATCATCGTTTCGTTTAGCTGGCGGAAGTTCTTCAAGAATTTTCTTATTTAGATGTTGTTGACAATTTGGGGTTTTCAAAATTTGATTTCTTTGTTAGTATGCTTCTCTAAGTTTTGCTTATTGTAGGTTTGGCTAACCCATCAGAACTTAGAGGAGAACAGAGAGAAAACTGTTTCTTTCCCGGGTGAAATATCTTCAAGATGTCTGTCACTCAAAATGATCCACTCCTGCAAGTGGAAACCACGTGTGGTTCACTTCTTTATGAACTTCAGGTTTGTCTCGAACTTCAATATCGTCCTTAGTAAAACATAGTTTGTATTTAAATCTCTTTTTTTAGGCTGATCTGTTGAAGTTTGTATGTAACTCTCTCTTTTGGAGGCTGATCTCATTCTGTACGCAATATTTTTTAATATCAGATAA

mRNA sequence

ATGGCTTCATTTCCACCGCTCTTTCAACGGTCCCTTTTCCTTTTAACGTCTCTCTCCCCCTTCAAATTCCCCTCTCGCATCGCTTTCTTCCAAGCTTCACATTTCGAGAAAACCACTTTTTCCCAGGAAAATTCCATCCCTTCATTCTTCCCCTCTCAAATCACTTCTCTTACCCCAAGCTTCACCACATTGATTCTACTTCAGGTTTGGCTAACCCATCAGAACTTAGAGGAGAACAGAGAGAAAACTGTTTCTTTCCCGGGTGAAATATCTTCAAGATGTCTGTCACTCAAAATGATCCACTCCTGCAAGTGGAAACCACGTGTGGTTCACTTCTTTATGAACTTCAGATAA

Coding sequence (CDS)

ATGGCTTCATTTCCACCGCTCTTTCAACGGTCCCTTTTCCTTTTAACGTCTCTCTCCCCCTTCAAATTCCCCTCTCGCATCGCTTTCTTCCAAGCTTCACATTTCGAGAAAACCACTTTTTCCCAGGAAAATTCCATCCCTTCATTCTTCCCCTCTCAAATCACTTCTCTTACCCCAAGCTTCACCACATTGATTCTACTTCAGGTTTGGCTAACCCATCAGAACTTAGAGGAGAACAGAGAGAAAACTGTTTCTTTCCCGGGTGAAATATCTTCAAGATGTCTGTCACTCAAAATGATCCACTCCTGCAAGTGGAAACCACGTGTGGTTCACTTCTTTATGAACTTCAGATAA

Protein sequence

MASFPPLFQRSLFLLTSLSPFKFPSRIAFFQASHFEKTTFSQENSIPSFFPSQITSLTPSFTTLILLQVWLTHQNLEENREKTVSFPGEISSRCLSLKMIHSCKWKPRVVHFFMNFR*
Homology
[Close]
BLAST of Csa3G176880 vs. TrEMBL
Match: A0A0A0L686_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176880 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 8.8e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 

Query: 1   MASFPPLFQRSLFLLTSLSPFKFPSRIAFFQASHFEKTTFSQENSIPSFFPSQITSLTPS 60
           MASFPPLFQRSLFLLTSLSPFKFPSRIAFFQASHFEKTTFSQENSIPSFFPSQITSLTPS
Sbjct: 1   MASFPPLFQRSLFLLTSLSPFKFPSRIAFFQASHFEKTTFSQENSIPSFFPSQITSLTPS 60

Query: 61  FTTLILLQVWLTHQNLEENREKTVSFPGEISSRCLSLKMIHSCKWKPRVVHFFMNFR 118
           FTTLILLQVWLTHQNLEENREKTVSFPGEISSRCLSLKMIHSCKWKPRVVHFFMNFR
Sbjct: 61  FTTLILLQVWLTHQNLEENREKTVSFPGEISSRCLSLKMIHSCKWKPRVVHFFMNFR 117

[Close]
BLAST of Csa3G176880 vs. NCBI nr
Match: gi|700202160|gb|KGN57293.1| (hypothetical protein Csa_3G176880 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 1.3e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 

Query: 1   MASFPPLFQRSLFLLTSLSPFKFPSRIAFFQASHFEKTTFSQENSIPSFFPSQITSLTPS 60
           MASFPPLFQRSLFLLTSLSPFKFPSRIAFFQASHFEKTTFSQENSIPSFFPSQITSLTPS
Sbjct: 1   MASFPPLFQRSLFLLTSLSPFKFPSRIAFFQASHFEKTTFSQENSIPSFFPSQITSLTPS 60

Query: 61  FTTLILLQVWLTHQNLEENREKTVSFPGEISSRCLSLKMIHSCKWKPRVVHFFMNFR 118
           FTTLILLQVWLTHQNLEENREKTVSFPGEISSRCLSLKMIHSCKWKPRVVHFFMNFR
Sbjct: 61  FTTLILLQVWLTHQNLEENREKTVSFPGEISSRCLSLKMIHSCKWKPRVVHFFMNFR 117

The following BLAST results are available for this feature:
BLAST of Csa3G176880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L686_CUCSA8.8e-61100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176880 PE=4 SV=1[more]
BLAST of Csa3G176880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202160|gb|KGN57293.1|1.3e-60100.00hypothetical protein Csa_3G176880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU140910cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G176880.1Csa3G176880.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU140910CU140910transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G176880Silver-seed gourdcarcuB0107
Csa3G176880Silver-seed gourdcarcuB0730
Csa3G176880Silver-seed gourdcarcuB0885
Csa3G176880Silver-seed gourdcarcuB0933
Csa3G176880Silver-seed gourdcarcuB0952
Csa3G176880Watermelon (97103) v2cuwmbB204
Csa3G176880Watermelon (97103) v2cuwmbB179
Csa3G176880Wax gourdcuwgoB269
Csa3G176880Cucumber (Chinese Long) v2cucuB102
Csa3G176880Cucumber (Chinese Long) v2cucuB125
Csa3G176880Cucumber (Gy14) v1cgycuB366
Csa3G176880Cucumber (Gy14) v1cgycuB430
Csa3G176880Cucurbita maxima (Rimu)cmacuB283
Csa3G176880Cucurbita maxima (Rimu)cmacuB329
Csa3G176880Cucurbita maxima (Rimu)cmacuB408
Csa3G176880Cucurbita maxima (Rimu)cmacuB596
Csa3G176880Cucurbita maxima (Rimu)cmacuB603
Csa3G176880Cucurbita moschata (Rifu)cmocuB269
Csa3G176880Cucurbita moschata (Rifu)cmocuB317
Csa3G176880Cucurbita moschata (Rifu)cmocuB398
Csa3G176880Cucurbita moschata (Rifu)cmocuB583
Csa3G176880Melon (DHL92) v3.5.1cumeB173
Csa3G176880Melon (DHL92) v3.5.1cumeB236
Csa3G176880Watermelon (Charleston Gray)cuwcgB208
Csa3G176880Watermelon (Charleston Gray)cuwcgB222
Csa3G176880Watermelon (Charleston Gray)cuwcgB250
Csa3G176880Watermelon (97103) v1cuwmB233
Csa3G176880Watermelon (97103) v1cuwmB262
Csa3G176880Cucurbita pepo (Zucchini)cpecuB039
Csa3G176880Cucurbita pepo (Zucchini)cpecuB171
Csa3G176880Cucurbita pepo (Zucchini)cpecuB214
Csa3G176880Cucurbita pepo (Zucchini)cpecuB719
Csa3G176880Cucurbita pepo (Zucchini)cpecuB725
Csa3G176880Bottle gourd (USVL1VR-Ls)culsiB156
Csa3G176880Bottle gourd (USVL1VR-Ls)culsiB210
Csa3G176880Cucumber (Gy14) v2cgybcuB109
Csa3G176880Cucumber (Gy14) v2cgybcuB213
Csa3G176880Melon (DHL92) v3.6.1cumedB154
Csa3G176880Melon (DHL92) v3.6.1cumedB223