Csa3G173000 (gene) Cucumber (Chinese Long) v2

NameCsa3G173000
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 11640423 .. 11640650 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTCACTCCTAGCCTTAGCCCACAATTTTGAAAGGAGCTACCGCAGCCCGAATTCCCGTCGGAGACCATTAGCTCAGTCATCGAAACCATGTCCGTTCGCCATTGCCACCTCCAACTTCCGGCTTAATCTTCATTCCCATTTCTTCTTCCTCTTCTCCATCGAGCACGCAACAATCTCCAATTCAATTTATGCTGGTTTCTCAGGCCCTATTTTCTCTGAGTAA

mRNA sequence

ATGGGCTCACTCCTAGCCTTAGCCCACAATTTTGAAAGGAGCTACCGCAGCCCGAATTCCCGTCGGAGACCATTAGCTCAGTCATCGAAACCATGTCCGTTCGCCATTGCCACCTCCAACTTCCGGCTTAATCTTCATTCCCATTTCTTCTTCCTCTTCTCCATCGAGCACGCAACAATCTCCAATTCAATTTATGCTGGTTTCTCAGGCCCTATTTTCTCTGAGTAA

Coding sequence (CDS)

ATGGGCTCACTCCTAGCCTTAGCCCACAATTTTGAAAGGAGCTACCGCAGCCCGAATTCCCGTCGGAGACCATTAGCTCAGTCATCGAAACCATGTCCGTTCGCCATTGCCACCTCCAACTTCCGGCTTAATCTTCATTCCCATTTCTTCTTCCTCTTCTCCATCGAGCACGCAACAATCTCCAATTCAATTTATGCTGGTTTCTCAGGCCCTATTTTCTCTGAGTAA

Protein sequence

MGSLLALAHNFERSYRSPNSRRRPLAQSSKPCPFAIATSNFRLNLHSHFFFLFSIEHATISNSIYAGFSGPIFSE*
BLAST of Csa3G173000 vs. TrEMBL
Match: A0A0A0L5J7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G173000 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.1e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query: 1  MGSLLALAHNFERSYRSPNSRRRPLAQSSKPCPFAIATSNFRLNLHSHFFFLFSIEHATI 60
          MGSLLALAHNFERSYRSPNSRRRPLAQSSKPCPFAIATSNFRLNLHSHFFFLFSIEHATI
Sbjct: 1  MGSLLALAHNFERSYRSPNSRRRPLAQSSKPCPFAIATSNFRLNLHSHFFFLFSIEHATI 60

Query: 61 SNSIYAGFSGPIFSE 76
          SNSIYAGFSGPIFSE
Sbjct: 61 SNSIYAGFSGPIFSE 75

BLAST of Csa3G173000 vs. NCBI nr
Match: gi|700202112|gb|KGN57245.1| (hypothetical protein Csa_3G173000 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 5.9e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query: 1  MGSLLALAHNFERSYRSPNSRRRPLAQSSKPCPFAIATSNFRLNLHSHFFFLFSIEHATI 60
          MGSLLALAHNFERSYRSPNSRRRPLAQSSKPCPFAIATSNFRLNLHSHFFFLFSIEHATI
Sbjct: 1  MGSLLALAHNFERSYRSPNSRRRPLAQSSKPCPFAIATSNFRLNLHSHFFFLFSIEHATI 60

Query: 61 SNSIYAGFSGPIFSE 76
          SNSIYAGFSGPIFSE
Sbjct: 61 SNSIYAGFSGPIFSE 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L5J7_CUCSA4.1e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G173000 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700202112|gb|KGN57245.1|5.9e-35100.00hypothetical protein Csa_3G173000 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G173000.1Csa3G173000.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None