Csa3G171110 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G171110
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPre-mRNA-processing factor
LocationChr3 : 11378122 .. 11378505 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAGGCACTGCAAGTATGTCCAAATAGTGGCATATTGCGGGAAGCCTGAATAGAGATGGTACCTTGCCCATGATGTAAAACCAAGACCATTGTTGCACTTAACAAATGTGATCATGATACTCACCTTATTGCTGCTGTGGCCAAGTTGTTTTGGCATTACAGGAAGGTTGACATTGCTAGAACTTGGCTGAACAGGGCAGTAATTCTTGCTTCAGGTGTTGGTGTTTTTACTACAAATTCAAACTTCAGCAGGGTACTGACGAGAATCAGAAGAAACGTACTGAAGAGATATGTTGATGCAGAACCCAAACAGTTGCGAAATGGCAAACAATTTCAAAGGCTGAGGAGAACTTCCATCAAACGACTGAAGCAATCTTGA

mRNA sequence

ATGGCCAAGGCACTGCAAACCATTGTTGCACTTAACAAATGTGATCATGATACTCACCTTATTGCTGCTGTGGCCAAGTTGTTTTGGCATTACAGGAAGGTTGACATTGCTAGAACTTGGCTGAACAGGGCAGTAATTCTTGCTTCAGGTGTTGGTGTTTTTACTACAAATTCAAACTTCAGCAGGGTACTGACGAGAATCAGAAGAAACGTACTGAAGAGATATGTTGATGCAGAACCCAAACAGTTGCGAAATGGCAAACAATTTCAAAGGCTGAGGAGAACTTCCATCAAACGACTGAAGCAATCTTGA

Coding sequence (CDS)

ATGGCCAAGGCACTGCAAACCATTGTTGCACTTAACAAATGTGATCATGATACTCACCTTATTGCTGCTGTGGCCAAGTTGTTTTGGCATTACAGGAAGGTTGACATTGCTAGAACTTGGCTGAACAGGGCAGTAATTCTTGCTTCAGGTGTTGGTGTTTTTACTACAAATTCAAACTTCAGCAGGGTACTGACGAGAATCAGAAGAAACGTACTGAAGAGATATGTTGATGCAGAACCCAAACAGTTGCGAAATGGCAAACAATTTCAAAGGCTGAGGAGAACTTCCATCAAACGACTGAAGCAATCTTGA

Protein sequence

MAKALQTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNFSRVLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRRTSIKRLKQS*
Homology
[Close]
BLAST of Csa3G171110 vs. Swiss-Prot
Match: PRP6_BOVIN (Pre-mRNA-processing factor 6 OS=Bos taurus GN=PRPF6 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 30/79 (37.97%), Postives = 41/79 (51.90%), Query Frame = 1 

Query: 6   QTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSR 65
           +++ AL KC+HD H++ AVAKLFW  RK+  AR W +R V + S +G    F        
Sbjct: 829 KSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQH 888

Query: 66  VLTRIRRNVLKRYVDAEPK 82
                R  V +R  +AEP+
Sbjct: 889 GTEEQREEVRRRCENAEPR 907

[Close]
BLAST of Csa3G171110 vs. Swiss-Prot
Match: PRP6_HUMAN (Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-07
Identity = 30/79 (37.97%), Postives = 40/79 (50.63%), Query Frame = 1 

Query: 6   QTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSR 65
           +++ AL KC+HD H++ AVAKLFW  RK+  AR W +R V + S +G    F        
Sbjct: 829 KSVDALKKCEHDPHVLLAVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQH 888

Query: 66  VLTRIRRNVLKRYVDAEPK 82
                +  V KR   AEP+
Sbjct: 889 GTEEQQEEVRKRCESAEPR 907

[Close]
BLAST of Csa3G171110 vs. Swiss-Prot
Match: PRP6_PONAB (Pre-mRNA-processing factor 6 OS=Pongo abelii GN=PRPF6 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-07
Identity = 30/79 (37.97%), Postives = 40/79 (50.63%), Query Frame = 1 

Query: 6   QTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSR 65
           +++ AL KC+HD H++ AVAKLFW  RK+  AR W +R V + S +G    F        
Sbjct: 829 KSVDALKKCEHDPHVLLAVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQH 888

Query: 66  VLTRIRRNVLKRYVDAEPK 82
                +  V KR   AEP+
Sbjct: 889 GTEERQEEVRKRCESAEPR 907

[Close]
BLAST of Csa3G171110 vs. Swiss-Prot
Match: PRP6_MOUSE (Pre-mRNA-processing factor 6 OS=Mus musculus GN=Prpf6 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-07
Identity = 30/79 (37.97%), Postives = 41/79 (51.90%), Query Frame = 1 

Query: 6   QTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSR 65
           +++ AL KC+HD H++ AVAKLFW  RK+  AR W +R V + S +G    F        
Sbjct: 829 KSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQH 888

Query: 66  VLTRIRRNVLKRYVDAEPK 82
                +  V KR  +AEP+
Sbjct: 889 GTEEQQEEVRKRCENAEPR 907

[Close]
BLAST of Csa3G171110 vs. Swiss-Prot
Match: PRP6_RAT (Pre-mRNA-processing factor 6 OS=Rattus norvegicus GN=Prpf6 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-07
Identity = 30/79 (37.97%), Postives = 41/79 (51.90%), Query Frame = 1 

Query: 6   QTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSR 65
           +++ AL KC+HD H++ AVAKLFW  RK+  AR W +R V + S +G    F        
Sbjct: 829 KSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQH 888

Query: 66  VLTRIRRNVLKRYVDAEPK 82
                +  V KR  +AEP+
Sbjct: 889 GTEEQQEEVRKRCENAEPR 907

[Close]
BLAST of Csa3G171110 vs. TrEMBL
Match: A0A0A0L5Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171110 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 2.8e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MAKALQTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNF 60
           MAKALQTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNF
Sbjct: 1   MAKALQTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNF 60

Query: 61  SRVLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRRTSIKRLKQS 104
           SRVLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRRTSIKRLKQS
Sbjct: 61  SRVLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRRTSIKRLKQS 103

[Close]
BLAST of Csa3G171110 vs. TrEMBL
Match: B9RW28_RICCO (Pre-mRNA splicing factor, putative OS=Ricinus communis GN=RCOM_1175540 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-13
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 10  ALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTR 69
           AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F               
Sbjct: 915 ALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALYYKFELQHGTEE 974

Query: 70  IRRNVLKRYVDAEPKQLRNGKQFQRLRR 95
            +R+VLKR + AEPK   +G+++Q + +
Sbjct: 975 NQRDVLKRCIAAEPK---HGEKWQAISK 999

[Close]
BLAST of Csa3G171110 vs. TrEMBL
Match: A0A151SF39_CAJCA (Pre-mRNA-processing factor 6 OS=Cajanus cajan GN=KK1_024785 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-13
Identity = 45/88 (51.14%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 10  ALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTR 69
           AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F               
Sbjct: 669 ALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALCYKFELQHGTEE 728

Query: 70  IRRNVLKRYVDAEPKQLRNGKQFQRLRR 95
            +++VLKR + AEPK   +G+++Q + +
Sbjct: 729 NQKDVLKRCIAAEPK---HGEKWQAISK 753

[Close]
BLAST of Csa3G171110 vs. TrEMBL
Match: V7BV27_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G104900g PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-13
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = 1 

Query: 6    QTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSR 65
            +++ A+ KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F           
Sbjct: 921  KSVDAIKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALCYKFELQH 980

Query: 66   VLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRR 95
                 +++VLKR + AEPK   +G+++Q + +
Sbjct: 981  GTEENQKDVLKRCIAAEPK---HGEKWQAISK 1009

[Close]
BLAST of Csa3G171110 vs. TrEMBL
Match: A0A0S3SHG8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G096300 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.6e-13
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 1 

Query: 6    QTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSR 65
            +++ A+ KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F           
Sbjct: 920  KSVDAIKKCDHDAHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALCYKFELQH 979

Query: 66   VLTRIRRNVLKRYVDAEPKQLRNGKQFQ 91
                 +++VLKR + AEPK   +G+++Q
Sbjct: 980  GTEENQKDVLKRCIAAEPK---HGEKWQ 1004

[Close]
BLAST of Csa3G171110 vs. TAIR10
Match: AT4G03430.1 (AT4G03430.1 pre-mRNA splicing factor-related)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 32/92 (34.78%), Postives = 47/92 (51.09%), Query Frame = 1 

Query: 6    QTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSR 65
            ++I A+ KCD D H+  AVAKLFW  +KV+ AR W  RAV +   +G F           
Sbjct: 914  KSIDAMKKCDRDPHVTIAVAKLFWQDKKVEKARAWFERAVTVGPDIGDFWALFYKFELQH 973

Query: 66   VLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRR 95
                 R+ V+ + V  EPK   +G+++Q + +
Sbjct: 974  GSDEDRKEVVAKCVACEPK---HGEKWQAISK 1002

[Close]
BLAST of Csa3G171110 vs. NCBI nr
Match: gi|700202070|gb|KGN57203.1| (hypothetical protein Csa_3G171110 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 4.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MAKALQTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNF 60
           MAKALQTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNF
Sbjct: 1   MAKALQTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNF 60

Query: 61  SRVLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRRTSIKRLKQS 104
           SRVLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRRTSIKRLKQS
Sbjct: 61  SRVLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRRTSIKRLKQS 103

[Close]
BLAST of Csa3G171110 vs. NCBI nr
Match: gi|255553813|ref|XP_002517947.1| (PREDICTED: protein STABILIZED1 [Ricinus communis])

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-13
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 10  ALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTR 69
           AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F               
Sbjct: 915 ALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALYYKFELQHGTEE 974

Query: 70  IRRNVLKRYVDAEPKQLRNGKQFQRLRR 95
            +R+VLKR + AEPK   +G+++Q + +
Sbjct: 975 NQRDVLKRCIAAEPK---HGEKWQAISK 999

[Close]
BLAST of Csa3G171110 vs. NCBI nr
Match: gi|1021494471|ref|XP_016190229.1| (PREDICTED: protein STABILIZED1 [Arachis ipaensis])

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-13
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 10   ALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTR 69
            AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F               
Sbjct: 921  ALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALCYKFELQHGTED 980

Query: 70   IRRNVLKRYVDAEPKQLRNGKQFQRLRR 95
             +++VLKR V AEPK   +G+++Q + +
Sbjct: 981  SQKDVLKRCVSAEPK---HGEKWQAISK 1005

[Close]
BLAST of Csa3G171110 vs. NCBI nr
Match: gi|1012099983|ref|XP_015957103.1| (PREDICTED: protein STABILIZED1 [Arachis duranensis])

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-13
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 10   ALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTR 69
            AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F               
Sbjct: 921  ALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALCYKFELQHGTED 980

Query: 70   IRRNVLKRYVDAEPKQLRNGKQFQRLRR 95
             +++VLKR V AEPK   +G+++Q + +
Sbjct: 981  SQKDVLKRCVSAEPK---HGEKWQAISK 1005

[Close]
BLAST of Csa3G171110 vs. NCBI nr
Match: gi|951072544|ref|XP_014491759.1| (PREDICTED: protein STABILIZED1 [Vigna radiata var. radiata])

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-13
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = 1 

Query: 6    QTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSR 65
            +++ A+ KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F           
Sbjct: 920  KSVDAIKKCDHDAHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALCYKFELQH 979

Query: 66   VLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRR 95
                 +++VLKR + AEPK   +G+++Q + +
Sbjct: 980  GTEENQKDVLKRCIAAEPK---HGEKWQAISK 1008

The following BLAST results are available for this feature:
BLAST of Csa3G171110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PRP6_BOVIN1.4e-0737.97Pre-mRNA-processing factor 6 OS=Bos taurus GN=PRPF6 PE=2 SV=1[more]
PRP6_HUMAN1.9e-0737.97Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1[more]
PRP6_PONAB1.9e-0737.97Pre-mRNA-processing factor 6 OS=Pongo abelii GN=PRPF6 PE=2 SV=1[more]
PRP6_MOUSE1.9e-0737.97Pre-mRNA-processing factor 6 OS=Mus musculus GN=Prpf6 PE=1 SV=1[more]
PRP6_RAT1.9e-0737.97Pre-mRNA-processing factor 6 OS=Rattus norvegicus GN=Prpf6 PE=1 SV=1[more]
BLAST of Csa3G171110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5Z8_CUCSA2.8e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171110 PE=4 SV=1[more]
B9RW28_RICCO1.6e-1352.27Pre-mRNA splicing factor, putative OS=Ricinus communis GN=RCOM_1175540 PE=4 SV=1[more]
A0A151SF39_CAJCA3.5e-1351.14Pre-mRNA-processing factor 6 OS=Cajanus cajan GN=KK1_024785 PE=4 SV=1[more]
V7BV27_PHAVU3.5e-1347.83Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G104900g PE=4 SV=1[more]
A0A0S3SHG8_PHAAN4.6e-1350.00Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G096300 PE=... [more]
BLAST of Csa3G171110 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G03430.11.1e-0834.78 pre-mRNA splicing factor-related[more]
BLAST of Csa3G171110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202070|gb|KGN57203.1|4.0e-50100.00hypothetical protein Csa_3G171110 [Cucumis sativus][more]
gi|255553813|ref|XP_002517947.1|2.3e-1352.27PREDICTED: protein STABILIZED1 [Ricinus communis][more]
gi|1021494471|ref|XP_016190229.1|3.0e-1352.27PREDICTED: protein STABILIZED1 [Arachis ipaensis][more]
gi|1012099983|ref|XP_015957103.1|3.0e-1352.27PREDICTED: protein STABILIZED1 [Arachis duranensis][more]
gi|951072544|ref|XP_014491759.1|3.9e-1347.83PREDICTED: protein STABILIZED1 [Vigna radiata var. radiata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU153122cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G171110.1Csa3G171110.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU153122CU153122transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G171110Lsi05G013880Bottle gourd (USVL1VR-Ls)culsiB210
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G171110Wax gourdcuwgoB253
Csa3G171110Wax gourdcuwgoB269
Csa3G171110Cucumber (Gy14) v1cgycuB366
Csa3G171110Cucurbita maxima (Rimu)cmacuB253
Csa3G171110Cucurbita maxima (Rimu)cmacuB814
Csa3G171110Cucurbita moschata (Rifu)cmocuB239
Csa3G171110Cucurbita moschata (Rifu)cmocuB806
Csa3G171110Melon (DHL92) v3.5.1cumeB180
Csa3G171110Melon (DHL92) v3.5.1cumeB236
Csa3G171110Watermelon (Charleston Gray)cuwcgB222
Csa3G171110Watermelon (97103) v1cuwmB233
Csa3G171110Cucurbita pepo (Zucchini)cpecuB609
Csa3G171110Cucurbita pepo (Zucchini)cpecuB859
Csa3G171110Cucumber (Gy14) v2cgybcuB109
Csa3G171110Melon (DHL92) v3.6.1cumedB165
Csa3G171110Melon (DHL92) v3.6.1cumedB223
Csa3G171110Silver-seed gourdcarcuB0306
Csa3G171110Silver-seed gourdcarcuB0757
Csa3G171110Watermelon (97103) v2cuwmbB204