Csa3G169510 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G169510
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Vacuolar protein sorting-associated protein, putative; contains IPR026847 (Vacuolar protein sorting-associated protein 13)
Location	Chr3 : 11278645 .. 11278876 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGCTGTGATCGTTTTTTAGACTTTCTGAGGAGGAGTAATGAAGTTAGCCCCACTGTTGCACTGGAAACCGCAACAGCTTTGCAGGTGATATTGTCTAATAACTTTCCACTGTTATTTTTTGAACTAAACTTATAGTACTTTATCCAAAGTGCAGGTAAAATTTGAGAAAGTGACTCGTAGAGCGCAAGAGCAATTTCAGACTGCATTAGAGGAACAGAGCAGGTAA

mRNA sequence

ATGGACAGCTGTGATCGTTTTTTAGACTTTCTGAGGAGGAGTAATGAAGTTAGCCCCACTGTTGCACTGGAAACCGCAACAGCTTTGCAGGTAAAATTTGAGAAAGTGACTCGTAGAGCGCAAGAGCAATTTCAGACTGCATTAGAGGAACAGAGCAGGTAA

Coding sequence (CDS)

ATGGACAGCTGTGATCGTTTTTTAGACTTTCTGAGGAGGAGTAATGAAGTTAGCCCCACTGTTGCACTGGAAACCGCAACAGCTTTGCAGGTAAAATTTGAGAAAGTGACTCGTAGAGCGCAAGAGCAATTTCAGACTGCATTAGAGGAACAGAGCAGGTAA

Protein sequence

MDSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR*

Homology

[Close]

BLAST of Csa3G169510 vs. TrEMBL
Match: A0A0A0LAT3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G169510 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.6e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 1  MDSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR 54
          MDSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR
Sbjct: 1  MDSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR 53

[Close]

BLAST of Csa3G169510 vs. TrEMBL
Match: A0A061EP79_THECC (Calcium-dependent lipid-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_021446 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.8e-16
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 2   DSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR 54
           +SCDRF DF++RSN VSPTVALETATALQ K EKVTRRAQEQFQT LEEQSR
Sbjct: 604 ESCDRFFDFVKRSNAVSPTVALETATALQTKIEKVTRRAQEQFQTVLEEQSR 655

[Close]

BLAST of Csa3G169510 vs. TrEMBL
Match: A0A061EQ98_THECC (Calcium-dependent lipid-binding family protein isoform 4 OS=Theobroma cacao GN=TCM_021446 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.8e-16
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 2   DSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR 54
           +SCDRF DF++RSN VSPTVALETATALQ K EKVTRRAQEQFQT LEEQSR
Sbjct: 604 ESCDRFFDFVKRSNAVSPTVALETATALQTKIEKVTRRAQEQFQTVLEEQSR 655

[Close]

BLAST of Csa3G169510 vs. TrEMBL
Match: A0A061EPR6_THECC (Calcium-dependent lipid-binding family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_021446 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.8e-16
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 2   DSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR 54
           +SCDRF DF++RSN VSPTVALETATALQ K EKVTRRAQEQFQT LEEQSR
Sbjct: 480 ESCDRFFDFVKRSNAVSPTVALETATALQTKIEKVTRRAQEQFQTVLEEQSR 531

[Close]

BLAST of Csa3G169510 vs. TrEMBL
Match: A0A061EX48_THECC (Calcium-dependent lipid-binding family protein isoform 3 OS=Theobroma cacao GN=TCM_021446 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.8e-16
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 2   DSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR 54
           +SCDRF DF++RSN VSPTVALETATALQ K EKVTRRAQEQFQT LEEQSR
Sbjct: 480 ESCDRFFDFVKRSNAVSPTVALETATALQTKIEKVTRRAQEQFQTVLEEQSR 531

[Close]

BLAST of Csa3G169510 vs. TAIR10
Match: AT1G48090.1 (AT1G48090.1 calcium-dependent lipid-binding family protein)

HSP 1 Score: 73.9 bits (180), Expect = 3.3e-14
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 1


Query: 2   DSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR 54
           +S DR L+F++RSN VSPTVALETA  LQ+K E+VTRRAQEQ Q  LEEQSR
Sbjct: 644 ESYDRVLEFVKRSNAVSPTVALETAAVLQMKLEEVTRRAQEQLQIVLEEQSR 695

[Close]

BLAST of Csa3G169510 vs. TAIR10
Match: AT4G17140.3 (AT4G17140.3 pleckstrin homology (PH) domain-containing protein)

HSP 1 Score: 46.2 bits (108), Expect = 7.4e-06
Identity = 24/52 (46.15%), Postives = 30/52 (57.69%), Query Frame = 1


Query: 2   DSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR 54
           DS D  ++F   S  VS T+ALETA A+Q   ++V R AQE    AL++ SR
Sbjct: 585 DSIDGIVNFFESSTAVSQTIALETAAAVQSTIDEVRRTAQEGMNRALKDHSR 636

[Close]

BLAST of Csa3G169510 vs. NCBI nr
Match: gi|778679130|ref|XP_011651092.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101213129 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 3.8e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 1   MDSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR 54
           MDSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR
Sbjct: 602 MDSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR 654

[Close]

BLAST of Csa3G169510 vs. NCBI nr
Match: gi|700202058|gb|KGN57191.1| (hypothetical protein Csa_3G169510 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 3.8e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 1  MDSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR 54
          MDSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR
Sbjct: 1  MDSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR 53

[Close]

BLAST of Csa3G169510 vs. NCBI nr
Match: gi|659077001|ref|XP_008438979.1| (PREDICTED: uncharacterized protein LOC103483912 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-19
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 1


Query: 1   MDSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR 54
           MDSCDRFL+FLRRSNEVSPTVALETA ALQVKFEKVTRRAQEQFQTALEEQSR
Sbjct: 602 MDSCDRFLEFLRRSNEVSPTVALETAAALQVKFEKVTRRAQEQFQTALEEQSR 654

[Close]

BLAST of Csa3G169510 vs. NCBI nr
Match: gi|590662315|ref|XP_007035914.1| (Calcium-dependent lipid-binding family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-15
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 2   DSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR 54
           +SCDRF DF++RSN VSPTVALETATALQ K EKVTRRAQEQFQT LEEQSR
Sbjct: 604 ESCDRFFDFVKRSNAVSPTVALETATALQTKIEKVTRRAQEQFQTVLEEQSR 655

[Close]

BLAST of Csa3G169510 vs. NCBI nr
Match: gi|1009172183|ref|XP_015867133.1| (PREDICTED: uncharacterized protein LOC107404665 [Ziziphus jujuba])

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-15
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1


Query: 1   MDSCDRFLDFLRRSNEVSPTVALETATALQVKFEKVTRRAQEQFQTALEEQSR 54
           M+SCDRFL+F++RSN VSPTVALETATALQ+K EKVTRRAQEQFQ  LEEQSR
Sbjct: 537 MESCDRFLEFVKRSNAVSPTVALETATALQMKIEKVTRRAQEQFQMVLEEQSR 589

The following BLAST results are available for this feature:

BLAST of Csa3G169510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAT3_CUCSA	2.6e-20	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G169510 PE=4 SV=1	[more]
A0A061EP79_THECC	8.8e-16	84.62	Calcium-dependent lipid-binding family protein isoform 1 OS=Theobroma cacao GN=T...	[more]
A0A061EQ98_THECC	8.8e-16	84.62	Calcium-dependent lipid-binding family protein isoform 4 OS=Theobroma cacao GN=T...	[more]
A0A061EPR6_THECC	8.8e-16	84.62	Calcium-dependent lipid-binding family protein isoform 2 (Fragment) OS=Theobroma...	[more]
A0A061EX48_THECC	8.8e-16	84.62	Calcium-dependent lipid-binding family protein isoform 3 OS=Theobroma cacao GN=T...	[more]

BLAST of Csa3G169510 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48090.1	3.3e-14	71.15	calcium-dependent lipid-binding family protein	[more]
AT4G17140.3	7.4e-06	46.15	pleckstrin homology (PH) domain-containing protein	[more]

BLAST of Csa3G169510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778679130\|ref\|XP_011651092.1\|	3.8e-20	100.00	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101213129 [Cucumis sa...	[more]
gi\|700202058\|gb\|KGN57191.1\|	3.8e-20	100.00	hypothetical protein Csa_3G169510 [Cucumis sativus]	[more]
gi\|659077001\|ref\|XP_008438979.1\|	4.2e-19	96.23	PREDICTED: uncharacterized protein LOC103483912 [Cucumis melo]	[more]
gi\|590662315\|ref\|XP_007035914.1\|	1.3e-15	84.62	Calcium-dependent lipid-binding family protein isoform 1 [Theobroma cacao]	[more]
gi\|1009172183\|ref\|XP_015867133.1\|	1.3e-15	83.02	PREDICTED: uncharacterized protein LOC107404665 [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU132546	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G169510.1	Csa3G169510.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU132546	CU132546	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G169510	Melon (DHL92) v3.5.1	cumeB180
Csa3G169510	Melon (DHL92) v3.5.1	cumeB236
Csa3G169510	Watermelon (Charleston Gray)	cuwcgB222
Csa3G169510	Watermelon (97103) v1	cuwmB233
Csa3G169510	Cucurbita pepo (Zucchini)	cpecuB609
Csa3G169510	Cucurbita pepo (Zucchini)	cpecuB859
Csa3G169510	Bottle gourd (USVL1VR-Ls)	culsiB210
Csa3G169510	Cucumber (Gy14) v2	cgybcuB109
Csa3G169510	Melon (DHL92) v3.6.1	cumedB165
Csa3G169510	Melon (DHL92) v3.6.1	cumedB223
Csa3G169510	Silver-seed gourd	carcuB0306
Csa3G169510	Silver-seed gourd	carcuB0757
Csa3G169510	Watermelon (97103) v2	cuwmbB204
Csa3G169510	Wax gourd	cuwgoB253
Csa3G169510	Wax gourd	cuwgoB269
Csa3G169510	Cucumber (Gy14) v1	cgycuB366
Csa3G169510	Cucurbita maxima (Rimu)	cmacuB253
Csa3G169510	Cucurbita maxima (Rimu)	cmacuB814
Csa3G169510	Cucurbita moschata (Rifu)	cmocuB239
Csa3G169510	Cucurbita moschata (Rifu)	cmocuB806