Csa3G146710 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G146710
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 9894405 .. 9894722 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTAGACAATGTGGGCTGCCAATATGGCGTCCGAGATAGATCTCAGTCTAGAAATGATTTTGAGACCTGTCACATAAACTTGCGCAGTCGTGGTGTTTGGCCACCTACACTTCGGAGCTCATTTTGTCAGTGTAGCTCATTTTGTCATACTTATCAGTTCAATTGTCTCCTTTGCTTGATTCGTTCGGCTATTCGGAGGCTTGGTTTAAGTCAGAGAACGAACAGCGTGCTCCAATGGGTTTCAAGACATGCGTCTTCCGGTGGTTTAGGTCATGTGGCAAGCTATATGAGTATGGCGATGCCAATAACATAA

mRNA sequence

ATGAATTTAGACAATGTGGGCTGCCAATATGGCGTCCGAGATAGATCTCAGTCTAGAAATGATTTTGAGACCTGTCACATAAACTTGCGCAGTCGTGGTGTTTGGCCACCTACACTTCGGAGCTCATTTTGTCAGTGTAGCTCATTTTGTCATACTTATCAGTTCAATTGTCTCCTTTGCTTGATTCGTTCGGCTATTCGGAGGCTTGGTTTAAGTCAGAGAACGAACAGCGTGCTCCAATGGGTTTCAAGACATGCGTCTTCCGGTGGTTTAGGTCATGTGGCAAGCTATATGAGTATGGCGATGCCAATAACATAA

Coding sequence (CDS)

ATGAATTTAGACAATGTGGGCTGCCAATATGGCGTCCGAGATAGATCTCAGTCTAGAAATGATTTTGAGACCTGTCACATAAACTTGCGCAGTCGTGGTGTTTGGCCACCTACACTTCGGAGCTCATTTTGTCAGTGTAGCTCATTTTGTCATACTTATCAGTTCAATTGTCTCCTTTGCTTGATTCGTTCGGCTATTCGGAGGCTTGGTTTAAGTCAGAGAACGAACAGCGTGCTCCAATGGGTTTCAAGACATGCGTCTTCCGGTGGTTTAGGTCATGTGGCAAGCTATATGAGTATGGCGATGCCAATAACATAA

Protein sequence

MNLDNVGCQYGVRDRSQSRNDFETCHINLRSRGVWPPTLRSSFCQCSSFCHTYQFNCLLCLIRSAIRRLGLSQRTNSVLQWVSRHASSGGLGHVASYMSMAMPIT*
Homology
[Close]
BLAST of Csa3G146710 vs. TrEMBL
Match: A0A0A0LAA4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146710 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 7.7e-56
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MNLDNVGCQYGVRDRSQSRNDFETCHINLRSRGVWPPTLRSSFCQCSSFCHTYQFNCLLC 60
           MNLDNVGCQYGVRDRSQSRNDFETCHINLRSRGVWPPTLRSSFCQCSSFCHTYQFNCLLC
Sbjct: 1   MNLDNVGCQYGVRDRSQSRNDFETCHINLRSRGVWPPTLRSSFCQCSSFCHTYQFNCLLC 60

Query: 61  LIRSAIRRLGLSQRTNSVLQWVSRHASSGGLGHVASYMSMAMPIT 106
           LIRSAIRRLGLSQRTNSVLQWVSRHASSGGLGHVASYMSMAMPIT
Sbjct: 61  LIRSAIRRLGLSQRTNSVLQWVSRHASSGGLGHVASYMSMAMPIT 105

[Close]
BLAST of Csa3G146710 vs. NCBI nr
Match: gi|700201853|gb|KGN56986.1| (hypothetical protein Csa_3G146710 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.1e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MNLDNVGCQYGVRDRSQSRNDFETCHINLRSRGVWPPTLRSSFCQCSSFCHTYQFNCLLC 60
           MNLDNVGCQYGVRDRSQSRNDFETCHINLRSRGVWPPTLRSSFCQCSSFCHTYQFNCLLC
Sbjct: 1   MNLDNVGCQYGVRDRSQSRNDFETCHINLRSRGVWPPTLRSSFCQCSSFCHTYQFNCLLC 60

Query: 61  LIRSAIRRLGLSQRTNSVLQWVSRHASSGGLGHVASYMSMAMPIT 106
           LIRSAIRRLGLSQRTNSVLQWVSRHASSGGLGHVASYMSMAMPIT
Sbjct: 61  LIRSAIRRLGLSQRTNSVLQWVSRHASSGGLGHVASYMSMAMPIT 105

The following BLAST results are available for this feature:
BLAST of Csa3G146710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAA4_CUCSA7.7e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146710 PE=4 SV=1[more]
BLAST of Csa3G146710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201853|gb|KGN56986.1|1.1e-55100.00hypothetical protein Csa_3G146710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G146710.1Csa3G146710.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G146710CSPI03G13160Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G146710Silver-seed gourdcarcuB0071
Csa3G146710Silver-seed gourdcarcuB0350
Csa3G146710Silver-seed gourdcarcuB0633
Csa3G146710Silver-seed gourdcarcuB0865
Csa3G146710Watermelon (97103) v2cuwmbB204
Csa3G146710Watermelon (97103) v2cuwmbB231
Csa3G146710Watermelon (97103) v2cuwmbB259
Csa3G146710Wax gourdcuwgoB252
Csa3G146710Wax gourdcuwgoB269
Csa3G146710Cucumber (Gy14) v1cgycuB366
Csa3G146710Cucurbita maxima (Rimu)cmacuB253
Csa3G146710Cucurbita maxima (Rimu)cmacuB355
Csa3G146710Cucurbita maxima (Rimu)cmacuB814
Csa3G146710Cucurbita maxima (Rimu)cmacuB885
Csa3G146710Cucurbita moschata (Rifu)cmocuB239
Csa3G146710Cucurbita moschata (Rifu)cmocuB806
Csa3G146710Cucurbita moschata (Rifu)cmocuB872
Csa3G146710Melon (DHL92) v3.5.1cumeB192
Csa3G146710Melon (DHL92) v3.5.1cumeB236
Csa3G146710Watermelon (Charleston Gray)cuwcgB183
Csa3G146710Watermelon (Charleston Gray)cuwcgB222
Csa3G146710Watermelon (97103) v1cuwmB233
Csa3G146710Watermelon (97103) v1cuwmB279
Csa3G146710Cucurbita pepo (Zucchini)cpecuB310
Csa3G146710Cucurbita pepo (Zucchini)cpecuB609
Csa3G146710Cucurbita pepo (Zucchini)cpecuB859
Csa3G146710Bottle gourd (USVL1VR-Ls)culsiB150
Csa3G146710Bottle gourd (USVL1VR-Ls)culsiB209
Csa3G146710Cucumber (Gy14) v2cgybcuB109
Csa3G146710Melon (DHL92) v3.6.1cumedB177
Csa3G146710Melon (DHL92) v3.6.1cumedB223