Csa3G142400 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G142400
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Proteinase inhibitor; contains IPR000864 (Proteinase inhibitor I13, potato inhibitor I)
Location	Chr3 : 9362439 .. 9363269 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCCTGTAAAATACCCAAATCAGAATTAAAAGGACAGCAAGAGTCTTCCAAATCCATACATATAATATACCCAACCTTCAACAATGGCTGAAGAATCTGCTAGAGGTAAGTCCATTATATATATTCACCCTATCAAATTGCTTTTTAATTTTTCAAAAATACTTGTTCCTAAGTAGTTTTAATTTCAAAACAATCTTGTTTTTGAGAAATTAGTTTAGATTTCGAATAAATATATGGTTTGTAAACTAAATGAAATTTTATCAACTATACAAGTATTGAAAGTCAAATGATATCAATTCAACACATAAAAACAATACCCCGATGCCTGTTTATGCAATTTGAGGTATATTCTACCAAAGGTTATACTTTGGTTGGATTTTAGATTATATCTATTTGCAAAATTTAACGTATAATCTATATATAATTCTTAAATAGAAAAAACTCAATGGCCAGAGCTTGTTGGCGTAGACTATTCTACTGCTGCTACGACAATAGAAACAGAGAATTCTCATGTGAAGGCTATCAAGTTTCTAGTTGGTAGTCCCATGTATCTGAATTTTGATCCTCGCCGAGTTCGGGTTGTTTGCGATACACAAGACAAGGTTGTTGAAATGCCCTACGTCGGTTAAAGATTGGGTGATGTGTATAAGGTGAATCATATGTATAATGTCTATGTCATTATGTCATTCCAATATTGTACTAATAAGCGGTATTTCTACTGTTTCAACTCTTGTTTCAAGTGTGTTTATTTGTAATAAATTGTTGAATAAATTGTTCCAATAAACATCAACAAGGACCTATCTTTAGATATTGCTCATGCACGTATTATA

mRNA sequence

ATGGCTGAAGAATCTGCTAGAGAAAAAACTCAATGGCCAGAGCTTGTTGGCGTAGACTATTCTACTGCTGCTACGACAATAGAAACAGAGAATTCTCATGTGAAGGCTATCAAGTTTCTAGTTGGTAGTCCCATGTATCTGAATTTTGATCCTCGCCGAGTTCGGGTTGTTTGCGATACACAAGACAAGGTTGTTGAAATGCCCTACGTCGGTTAA

Coding sequence (CDS)

ATGGCTGAAGAATCTGCTAGAGAAAAAACTCAATGGCCAGAGCTTGTTGGCGTAGACTATTCTACTGCTGCTACGACAATAGAAACAGAGAATTCTCATGTGAAGGCTATCAAGTTTCTAGTTGGTAGTCCCATGTATCTGAATTTTGATCCTCGCCGAGTTCGGGTTGTTTGCGATACACAAGACAAGGTTGTTGAAATGCCCTACGTCGGTTAA

Protein sequence

MAEESAREKTQWPELVGVDYSTAATTIETENSHVKAIKFLVGSPMYLNFDPRRVRVVCDTQDKVVEMPYVG*

Homology

[Close]

BLAST of Csa3G142400 vs. Swiss-Prot
Match: HPI_HEVBR (Protease inhibitor HPI OS=Hevea brasiliensis GN=PI1 PE=1 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 4.2e-06
Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 1


Query: 9  KTQWPELVGVDYSTAATTIETENSHVKAIKFLVGSPMYLNFDPRRVRVVCDTQDKVVEMP 68
          K  WPELVG +   AA  I+TEN++VKAI    G P+  + +  RVRV  D    V ++P
Sbjct: 8  KNSWPELVGTNGDIAAGIIQTENANVKAIVVKEGLPITQDLNFNRVRVFVDENRVVTQVP 67

Query: 69 YVG 72
           +G
Sbjct: 68 AIG 70

[Close]

BLAST of Csa3G142400 vs. TrEMBL
Match: A0A0A0L4I0_CUCSA (Protease inhibitor protein OS=Cucumis sativus GN=Csa_3G142400 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MAEESAREKTQWPELVGVDYSTAATTIETENSHVKAIKFLVGSPMYLNFDPRRVRVVCDT 60
          MAEESAREKTQWPELVGVDYSTAATTIETENSHVKAIKFLVGSPMYLNFDPRRVRVVCDT
Sbjct: 1  MAEESAREKTQWPELVGVDYSTAATTIETENSHVKAIKFLVGSPMYLNFDPRRVRVVCDT 60

Query: 61 QDKVVEMPYVG 72
          QDKVVEMPYVG
Sbjct: 61 QDKVVEMPYVG 71

[Close]

BLAST of Csa3G142400 vs. TrEMBL
Match: A0A0A0L9Z4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G142410 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-16
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 1  MAEESAREKTQWPELVGVDYSTAATTIETENSHVKAIKFLVGSPMYLNFDPRRVRVVCDT 60
          M EE    K+ WPELVGVD+S AA  IETEN +VKA K L+GSP+ LN+DP RV V+C+T
Sbjct: 1  MDEEFDTRKSIWPELVGVDFSAAARIIETENPNVKATKILIGSPVILNYDPTRVWVICNT 60

Query: 61 QDKVVEMPYVG 72
          +DKVV++P VG
Sbjct: 61 EDKVVDIPRVG 71

[Close]

BLAST of Csa3G142400 vs. TrEMBL
Match: A0A0A0L785_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141900 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.4e-13
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1


Query: 1  MAEESAREKTQWPELVGVDYSTAATTIETENSHVKAIKFLVGSPMYLNFDPRRVRVVCDT 60
          MAEESA+ KT+WPELV V++ TAA  IE EN  VKAIK LV SP   NFD  RV V C+ 
Sbjct: 1  MAEESAQRKTRWPELVFVNFCTAARIIEKENPDVKAIKILVDSPRIQNFDISRVWVDCNI 60

Query: 61 QDKVVEMPYVG 72
          +++VV++P VG
Sbjct: 61 EERVVKVPSVG 71

[Close]

BLAST of Csa3G142400 vs. TrEMBL
Match: A0A0A0L8E6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G142910 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.0e-11
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 1  MAEESAREKTQWPELVGVDYSTAATTIETENSHVKAIKFLVGSPMYLNFDPRRVRVVCDT 60
          MAEESA  KT+WPELV V YS AA  IE EN  V+A+K L G+P  LNFD  RV V  + 
Sbjct: 1  MAEESAPRKTEWPELVFVKYSIAAAIIEKENPDVEAVKILSGTPRILNFDINRVWVDINV 60

Query: 61 QDKVVEMPYVG 72
          ++ VV+ P VG
Sbjct: 61 EEVVVKKPKVG 71

[Close]

BLAST of Csa3G142400 vs. TrEMBL
Match: V4VRJ6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022906mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-07
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 9   KTQWPELVGVDYSTAATTIETENSHVKAIKFLVGSPMYLNFDPRRVRVVCDTQDKVVEMP 68
           K+ WPELVGV+   AA TI+ EN +V AI  L G+P+  +F   RVRVV D  +KVV++P
Sbjct: 57  KSSWPELVGVNGEIAAATIQKENPNVHAIIILEGTPVTQDFRCDRVRVVVDKYEKVVQVP 116

Query: 69  YVG 72
            +G
Sbjct: 117 RIG 119

[Close]

BLAST of Csa3G142400 vs. NCBI nr
Match: gi|700201762|gb|KGN56895.1| (Protease inhibitor protein [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MAEESAREKTQWPELVGVDYSTAATTIETENSHVKAIKFLVGSPMYLNFDPRRVRVVCDT 60
          MAEESAREKTQWPELVGVDYSTAATTIETENSHVKAIKFLVGSPMYLNFDPRRVRVVCDT
Sbjct: 1  MAEESAREKTQWPELVGVDYSTAATTIETENSHVKAIKFLVGSPMYLNFDPRRVRVVCDT 60

Query: 61 QDKVVEMPYVG 72
          QDKVVEMPYVG
Sbjct: 61 QDKVVEMPYVG 71

[Close]

BLAST of Csa3G142400 vs. NCBI nr
Match: gi|700201763|gb|KGN56896.1| (hypothetical protein Csa_3G142410 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-16
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 1  MAEESAREKTQWPELVGVDYSTAATTIETENSHVKAIKFLVGSPMYLNFDPRRVRVVCDT 60
          M EE    K+ WPELVGVD+S AA  IETEN +VKA K L+GSP+ LN+DP RV V+C+T
Sbjct: 1  MDEEFDTRKSIWPELVGVDFSAAARIIETENPNVKATKILIGSPVILNYDPTRVWVICNT 60

Query: 61 QDKVVEMPYVG 72
          +DKVV++P VG
Sbjct: 61 EDKVVDIPRVG 71

[Close]

BLAST of Csa3G142400 vs. NCBI nr
Match: gi|700201761|gb|KGN56894.1| (hypothetical protein Csa_3G141900 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 7.8e-13
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1


Query: 1  MAEESAREKTQWPELVGVDYSTAATTIETENSHVKAIKFLVGSPMYLNFDPRRVRVVCDT 60
          MAEESA+ KT+WPELV V++ TAA  IE EN  VKAIK LV SP   NFD  RV V C+ 
Sbjct: 1  MAEESAQRKTRWPELVFVNFCTAARIIEKENPDVKAIKILVDSPRIQNFDISRVWVDCNI 60

Query: 61 QDKVVEMPYVG 72
          +++VV++P VG
Sbjct: 61 EERVVKVPSVG 71

[Close]

BLAST of Csa3G142400 vs. NCBI nr
Match: gi|700201764|gb|KGN56897.1| (hypothetical protein Csa_3G142910 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 4.3e-11
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 1  MAEESAREKTQWPELVGVDYSTAATTIETENSHVKAIKFLVGSPMYLNFDPRRVRVVCDT 60
          MAEESA  KT+WPELV V YS AA  IE EN  V+A+K L G+P  LNFD  RV V  + 
Sbjct: 1  MAEESAPRKTEWPELVFVKYSIAAAIIEKENPDVEAVKILSGTPRILNFDINRVWVDINV 60

Query: 61 QDKVVEMPYVG 72
          ++ VV+ P VG
Sbjct: 61 EEVVVKKPKVG 71

[Close]

BLAST of Csa3G142400 vs. NCBI nr
Match: gi|567899842|ref|XP_006442409.1| (hypothetical protein CICLE_v10022906mg [Citrus clementina])

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-07
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 9   KTQWPELVGVDYSTAATTIETENSHVKAIKFLVGSPMYLNFDPRRVRVVCDTQDKVVEMP 68
           K+ WPELVGV+   AA TI+ EN +V AI  L G+P+  +F   RVRVV D  +KVV++P
Sbjct: 57  KSSWPELVGVNGEIAAATIQKENPNVHAIIILEGTPVTQDFRCDRVRVVVDKYEKVVQVP 116

Query: 69  YVG 72
            +G
Sbjct: 117 RIG 119

The following BLAST results are available for this feature:

BLAST of Csa3G142400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HPI_HEVBR	4.2e-06	42.86	Protease inhibitor HPI OS=Hevea brasiliensis GN=PI1 PE=1 SV=2	[more]

BLAST of Csa3G142400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4I0_CUCSA	1.1e-32	100.00	Protease inhibitor protein OS=Cucumis sativus GN=Csa_3G142400 PE=4 SV=1	[more]
A0A0A0L9Z4_CUCSA	1.8e-16	61.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G142410 PE=4 SV=1	[more]
A0A0A0L785_CUCSA	5.4e-13	59.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141900 PE=4 SV=1	[more]
A0A0A0L8E6_CUCSA	3.0e-11	56.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G142910 PE=4 SV=1	[more]
V4VRJ6_9ROSI	2.0e-07	50.79	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022906mg PE=4 SV=1	[more]

BLAST of Csa3G142400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201762\|gb\|KGN56895.1\|	1.5e-32	100.00	Protease inhibitor protein [Cucumis sativus]	[more]
gi\|700201763\|gb\|KGN56896.1\|	2.6e-16	61.97	hypothetical protein Csa_3G142410 [Cucumis sativus]	[more]
gi\|700201761\|gb\|KGN56894.1\|	7.8e-13	59.15	hypothetical protein Csa_3G141900 [Cucumis sativus]	[more]
gi\|700201764\|gb\|KGN56897.1\|	4.3e-11	56.34	hypothetical protein Csa_3G142910 [Cucumis sativus]	[more]
gi\|567899842\|ref\|XP_006442409.1\|	2.9e-07	50.79	hypothetical protein CICLE_v10022906mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000864	Prot_inh_pot1

Vocabulary: **Molecular Function**
Term	Definition
GO:0004867	serine-type endopeptidase inhibitor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0009611	response to wounding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010951	negative regulation of endopeptidase activity
biological_process	GO:0009611	response to wounding
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0004867	serine-type endopeptidase inhibitor activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU105448	cucumber EST collection version 3.0	transcribed_cluster
CU127792	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G142400.1	Csa3G142400.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU105448	CU105448	transcribed_cluster
CU127792	CU127792	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000864	Proteinase inhibitor I13, potato inhibitor I	PRODOM	PD002604		coord: 12..71 score: 3.
IPR000864	Proteinase inhibitor I13, potato inhibitor I	PFAM	PF00280	potato_inhibit	coord: 9..71 score: 1.1
IPR000864	Proteinase inhibitor I13, potato inhibitor I	unknown	SSF54654	CI-2 family of serine protease inhibitors	coord: 7..71 score: 1.7
None	No IPR available	GENE3D	G3DSA:3.30.10.10		coord: 7..71 score: 1.9
None	No IPR available	PANTHER	PTHR33091	FAMILY NOT NAMED	coord: 9..71 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G142400	Silver-seed gourd	carcuB0256
Csa3G142400	Silver-seed gourd	carcuB0262
Csa3G142400	Silver-seed gourd	carcuB0795
Csa3G142400	Silver-seed gourd	carcuB0975
Csa3G142400	Silver-seed gourd	carcuB1093
Csa3G142400	Watermelon (97103) v2	cuwmbB204
Csa3G142400	Watermelon (97103) v2	cuwmbB231
Csa3G142400	Watermelon (97103) v2	cuwmbB241
Csa3G142400	Wax gourd	cuwgoB251
Csa3G142400	Wax gourd	cuwgoB303
Csa3G142400	Wax gourd	cuwgoB324
Csa3G142400	Cucumber (Chinese Long) v2	cucuB050
Csa3G142400	Cucumber (Chinese Long) v2	cucuB054
Csa3G142400	Cucumber (Gy14) v1	cgycuB366
Csa3G142400	Cucumber (Gy14) v1	cgycuB537
Csa3G142400	Cucurbita maxima (Rimu)	cmacuB002
Csa3G142400	Cucurbita maxima (Rimu)	cmacuB253
Csa3G142400	Cucurbita maxima (Rimu)	cmacuB814
Csa3G142400	Cucurbita maxima (Rimu)	cmacuB885
Csa3G142400	Cucurbita moschata (Rifu)	cmocuB239
Csa3G142400	Cucurbita moschata (Rifu)	cmocuB806
Csa3G142400	Cucurbita moschata (Rifu)	cmocuB872
Csa3G142400	Melon (DHL92) v3.5.1	cumeB169
Csa3G142400	Melon (DHL92) v3.5.1	cumeB235
Csa3G142400	Melon (DHL92) v3.5.1	cumeB236
Csa3G142400	Watermelon (Charleston Gray)	cuwcgB222
Csa3G142400	Watermelon (Charleston Gray)	cuwcgB246
Csa3G142400	Watermelon (Charleston Gray)	cuwcgB255
Csa3G142400	Watermelon (97103) v1	cuwmB221
Csa3G142400	Watermelon (97103) v1	cuwmB233
Csa3G142400	Watermelon (97103) v1	cuwmB279
Csa3G142400	Cucurbita pepo (Zucchini)	cpecuB310
Csa3G142400	Cucurbita pepo (Zucchini)	cpecuB609
Csa3G142400	Cucurbita pepo (Zucchini)	cpecuB859
Csa3G142400	Bottle gourd (USVL1VR-Ls)	culsiB150
Csa3G142400	Bottle gourd (USVL1VR-Ls)	culsiB209
Csa3G142400	Bottle gourd (USVL1VR-Ls)	culsiB215
Csa3G142400	Cucumber (Gy14) v2	cgybcuB065
Csa3G142400	Cucumber (Gy14) v2	cgybcuB109
Csa3G142400	Melon (DHL92) v3.6.1	cumedB220
Csa3G142400	Melon (DHL92) v3.6.1	cumedB223