Csa3G133980 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G133980
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 8867219 .. 8867512 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGTCCAAATTTGGGTGAAAACGTAACTCTCTTCACAAACATAGAAGACATCGGTAATTGCGACGCGTGGTGGCGCGTCGAGAGTGGACCCTCGAAAATCTTGGAGCAGAGAGAACGACAAAAATGGAGTCCTCAAGACCTTCCAGGTGCCACTCTAACAGACATGGCTTCATCCTTAAACCTCTGGCGCTCCACTCTTCTCCTTCTTCCTTCTTCGCTTCCTTCCAATATTAAACTGAACACCATGCATTTCTTTATTTCTCCATTACCCTTCTCCACACTCTTCTAG

mRNA sequence

ATGGATAGTCCAAATTTGGGTGAAAACGTAACTCTCTTCACAAACATAGAAGACATCGGTAATTGCGACGCGTGGTGGCGCGTCGAGAGTGGACCCTCGAAAATCTTGGAGCAGAGAGAACGACAAAAATGGAGTCCTCAAGACCTTCCAGGTGCCACTCTAACAGACATGGCTTCATCCTTAAACCTCTGGCGCTCCACTCTTCTCCTTCTTCCTTCTTCGCTTCCTTCCAATATTAAACTGAACACCATGCATTTCTTTATTTCTCCATTACCCTTCTCCACACTCTTCTAG

Coding sequence (CDS)

ATGGATAGTCCAAATTTGGGTGAAAACGTAACTCTCTTCACAAACATAGAAGACATCGGTAATTGCGACGCGTGGTGGCGCGTCGAGAGTGGACCCTCGAAAATCTTGGAGCAGAGAGAACGACAAAAATGGAGTCCTCAAGACCTTCCAGGTGCCACTCTAACAGACATGGCTTCATCCTTAAACCTCTGGCGCTCCACTCTTCTCCTTCTTCCTTCTTCGCTTCCTTCCAATATTAAACTGAACACCATGCATTTCTTTATTTCTCCATTACCCTTCTCCACACTCTTCTAG

Protein sequence

MDSPNLGENVTLFTNIEDIGNCDAWWRVESGPSKILEQRERQKWSPQDLPGATLTDMASSLNLWRSTLLLLPSSLPSNIKLNTMHFFISPLPFSTLF*
Homology
[Close]
BLAST of Csa3G133980 vs. TrEMBL
Match: A0A0A0L4V9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133980 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-49
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MDSPNLGENVTLFTNIEDIGNCDAWWRVESGPSKILEQRERQKWSPQDLPGATLTDMASS 60
          MDSPNLGENVTLFTNIEDIGNCDAWWRVESGPSKILEQRERQKWSPQDLPGATLTDMASS
Sbjct: 1  MDSPNLGENVTLFTNIEDIGNCDAWWRVESGPSKILEQRERQKWSPQDLPGATLTDMASS 60

Query: 61 LNLWRSTLLLLPSSLPSNIKLNTMHFFISPLPFSTLF 98
          LNLWRSTLLLLPSSLPSNIKLNTMHFFISPLPFSTLF
Sbjct: 61 LNLWRSTLLLLPSSLPSNIKLNTMHFFISPLPFSTLF 97

[Close]
BLAST of Csa3G133980 vs. NCBI nr
Match: gi|700201665|gb|KGN56798.1| (hypothetical protein Csa_3G133980 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 1.9e-49
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MDSPNLGENVTLFTNIEDIGNCDAWWRVESGPSKILEQRERQKWSPQDLPGATLTDMASS 60
          MDSPNLGENVTLFTNIEDIGNCDAWWRVESGPSKILEQRERQKWSPQDLPGATLTDMASS
Sbjct: 1  MDSPNLGENVTLFTNIEDIGNCDAWWRVESGPSKILEQRERQKWSPQDLPGATLTDMASS 60

Query: 61 LNLWRSTLLLLPSSLPSNIKLNTMHFFISPLPFSTLF 98
          LNLWRSTLLLLPSSLPSNIKLNTMHFFISPLPFSTLF
Sbjct: 61 LNLWRSTLLLLPSSLPSNIKLNTMHFFISPLPFSTLF 97

The following BLAST results are available for this feature:
BLAST of Csa3G133980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4V9_CUCSA1.3e-49100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133980 PE=4 SV=1[more]
BLAST of Csa3G133980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201665|gb|KGN56798.1|1.9e-49100.00hypothetical protein Csa_3G133980 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G133980.1Csa3G133980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G133980CSPI03G11450Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G133980Cucumber (Chinese Long) v2cucuB050
Csa3G133980Cucumber (Chinese Long) v2cucuB090
Csa3G133980Cucumber (Chinese Long) v2cucuB118
Csa3G133980Cucumber (Gy14) v1cgycuB203
Csa3G133980Cucumber (Gy14) v1cgycuB366
Csa3G133980Cucumber (Gy14) v1cgycuB489
Csa3G133980Cucumber (Gy14) v1cgycuB537
Csa3G133980Cucurbita maxima (Rimu)cmacuB253
Csa3G133980Cucurbita maxima (Rimu)cmacuB356
Csa3G133980Cucurbita maxima (Rimu)cmacuB597
Csa3G133980Cucurbita maxima (Rimu)cmacuB814
Csa3G133980Cucurbita maxima (Rimu)cmacuB885
Csa3G133980Cucurbita moschata (Rifu)cmocuB239
Csa3G133980Cucurbita moschata (Rifu)cmocuB346
Csa3G133980Cucurbita moschata (Rifu)cmocuB585
Csa3G133980Cucurbita moschata (Rifu)cmocuB806
Csa3G133980Cucurbita moschata (Rifu)cmocuB872
Csa3G133980Melon (DHL92) v3.5.1cumeB219
Csa3G133980Melon (DHL92) v3.5.1cumeB231
Csa3G133980Melon (DHL92) v3.5.1cumeB236
Csa3G133980Watermelon (Charleston Gray)cuwcgB222
Csa3G133980Watermelon (Charleston Gray)cuwcgB245
Csa3G133980Watermelon (Charleston Gray)cuwcgB246
Csa3G133980Watermelon (Charleston Gray)cuwcgB255
Csa3G133980Watermelon (97103) v1cuwmB221
Csa3G133980Watermelon (97103) v1cuwmB233
Csa3G133980Watermelon (97103) v1cuwmB279
Csa3G133980Cucurbita pepo (Zucchini)cpecuB134
Csa3G133980Cucurbita pepo (Zucchini)cpecuB310
Csa3G133980Cucurbita pepo (Zucchini)cpecuB609
Csa3G133980Cucurbita pepo (Zucchini)cpecuB724
Csa3G133980Cucurbita pepo (Zucchini)cpecuB859
Csa3G133980Bottle gourd (USVL1VR-Ls)culsiB150
Csa3G133980Bottle gourd (USVL1VR-Ls)culsiB209
Csa3G133980Bottle gourd (USVL1VR-Ls)culsiB215
Csa3G133980Cucumber (Gy14) v2cgybcuB065
Csa3G133980Cucumber (Gy14) v2cgybcuB109
Csa3G133980Cucumber (Gy14) v2cgybcuB122
Csa3G133980Melon (DHL92) v3.6.1cumedB171
Csa3G133980Melon (DHL92) v3.6.1cumedB205
Csa3G133980Melon (DHL92) v3.6.1cumedB220
Csa3G133980Melon (DHL92) v3.6.1cumedB223
Csa3G133980Silver-seed gourdcarcuB0256
Csa3G133980Silver-seed gourdcarcuB0262
Csa3G133980Silver-seed gourdcarcuB0795
Csa3G133980Silver-seed gourdcarcuB0975
Csa3G133980Silver-seed gourdcarcuB1093
Csa3G133980Watermelon (97103) v2cuwmbB204
Csa3G133980Watermelon (97103) v2cuwmbB231
Csa3G133980Watermelon (97103) v2cuwmbB241
Csa3G133980Wax gourdcuwgoB251
Csa3G133980Wax gourdcuwgoB293
Csa3G133980Wax gourdcuwgoB303