Csa3G133340 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G133340
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 8792057 .. 8792375 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACAAGACATATGGGTAAAAATTGGATACCTCGAGTCCCCACATAACGAACAAACAAAGATATCTAGGCATCTCCCTTTTTATCCCCAACCATGTAGCTCCGGTTCCGGTTCCGATCAGTGCGTTTTACAGTGAACAGCAGTATTTTATTGAGTATTGCCCACTAATGGTTAAGGCCCACTTCAATTATCATGAGTTGACCCGTTCTGGCAGAAACTTGATCGACCTCCCAGGATTGGGAAAGGGAGAAAAGGGCACTAATGATCTGGATCTACTGTCAAAGATTCTACAAATTCAAAACTTTCGTGGCCACTAA

mRNA sequence

ATGGGACAAGACATATGGGTAAAAATTGGATACCTCGAGTCCCCACATAACGAACAAACAAAGATATCTAGGCATCTCCCTTTTTATCCCCAACCATGTAGCTCCGGTTCCGGTTCCGATCAAAACTTGATCGACCTCCCAGGATTGGGAAAGGGAGAAAAGGGCACTAATGATCTGGATCTACTGTCAAAGATTCTACAAATTCAAAACTTTCGTGGCCACTAA

Coding sequence (CDS)

ATGGGACAAGACATATGGGTAAAAATTGGATACCTCGAGTCCCCACATAACGAACAAACAAAGATATCTAGGCATCTCCCTTTTTATCCCCAACCATGTAGCTCCGGTTCCGGTTCCGATCAAAACTTGATCGACCTCCCAGGATTGGGAAAGGGAGAAAAGGGCACTAATGATCTGGATCTACTGTCAAAGATTCTACAAATTCAAAACTTTCGTGGCCACTAA

Protein sequence

MGQDIWVKIGYLESPHNEQTKISRHLPFYPQPCSSGSGSDQNLIDLPGLGKGEKGTNDLDLLSKILQIQNFRGH*
Homology
[Close]
BLAST of Csa3G133340 vs. TrEMBL
Match: A0A0A0L4U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133340 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.8e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MGQDIWVKIGYLESPHNEQTKISRHLPFYPQPCSSGSGSDQNLIDLPGLGKGEKGTNDLD 60
          MGQDIWVKIGYLESPHNEQTKISRHLPFYPQPCSSGSGSDQNLIDLPGLGKGEKGTNDLD
Sbjct: 1  MGQDIWVKIGYLESPHNEQTKISRHLPFYPQPCSSGSGSDQNLIDLPGLGKGEKGTNDLD 60

Query: 61 LLSKILQIQNFRGH 75
          LLSKILQIQNFRGH
Sbjct: 61 LLSKILQIQNFRGH 74

[Close]
BLAST of Csa3G133340 vs. NCBI nr
Match: gi|700201650|gb|KGN56783.1| (hypothetical protein Csa_3G133340 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 4.0e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MGQDIWVKIGYLESPHNEQTKISRHLPFYPQPCSSGSGSDQNLIDLPGLGKGEKGTNDLD 60
          MGQDIWVKIGYLESPHNEQTKISRHLPFYPQPCSSGSGSDQNLIDLPGLGKGEKGTNDLD
Sbjct: 1  MGQDIWVKIGYLESPHNEQTKISRHLPFYPQPCSSGSGSDQNLIDLPGLGKGEKGTNDLD 60

Query: 61 LLSKILQIQNFRGH 75
          LLSKILQIQNFRGH
Sbjct: 61 LLSKILQIQNFRGH 74

The following BLAST results are available for this feature:
BLAST of Csa3G133340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4U2_CUCSA2.8e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133340 PE=4 SV=1[more]
BLAST of Csa3G133340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201650|gb|KGN56783.1|4.0e-36100.00hypothetical protein Csa_3G133340 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU085484cucumber EST collection version 3.0transcribed_cluster
CU173205cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G133340.1Csa3G133340.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU085484CU085484transcribed_cluster
CU173205CU173205transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G133340Lsi05G017970Bottle gourd (USVL1VR-Ls)culsiB209
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G133340Cucurbita pepo (Zucchini)cpecuB134
Csa3G133340Cucurbita pepo (Zucchini)cpecuB310
Csa3G133340Cucurbita pepo (Zucchini)cpecuB609
Csa3G133340Cucurbita pepo (Zucchini)cpecuB724
Csa3G133340Cucurbita pepo (Zucchini)cpecuB859
Csa3G133340Bottle gourd (USVL1VR-Ls)culsiB150
Csa3G133340Bottle gourd (USVL1VR-Ls)culsiB215
Csa3G133340Cucumber (Gy14) v2cgybcuB065
Csa3G133340Cucumber (Gy14) v2cgybcuB109
Csa3G133340Melon (DHL92) v3.6.1cumedB220
Csa3G133340Melon (DHL92) v3.6.1cumedB223
Csa3G133340Silver-seed gourdcarcuB0256
Csa3G133340Silver-seed gourdcarcuB0262
Csa3G133340Silver-seed gourdcarcuB0975
Csa3G133340Silver-seed gourdcarcuB1093
Csa3G133340Watermelon (97103) v2cuwmbB204
Csa3G133340Watermelon (97103) v2cuwmbB231
Csa3G133340Watermelon (97103) v2cuwmbB241
Csa3G133340Wax gourdcuwgoB251
Csa3G133340Wax gourdcuwgoB278
Csa3G133340Wax gourdcuwgoB303
Csa3G133340Cucumber (Chinese Long) v2cucuB050
Csa3G133340Cucumber (Chinese Long) v2cucuB090
Csa3G133340Cucumber (Gy14) v1cgycuB203
Csa3G133340Cucumber (Gy14) v1cgycuB366
Csa3G133340Cucurbita maxima (Rimu)cmacuB253
Csa3G133340Cucurbita maxima (Rimu)cmacuB356
Csa3G133340Cucurbita maxima (Rimu)cmacuB814
Csa3G133340Cucurbita maxima (Rimu)cmacuB885
Csa3G133340Cucurbita moschata (Rifu)cmocuB239
Csa3G133340Cucurbita moschata (Rifu)cmocuB346
Csa3G133340Cucurbita moschata (Rifu)cmocuB806
Csa3G133340Cucurbita moschata (Rifu)cmocuB872
Csa3G133340Melon (DHL92) v3.5.1cumeB219
Csa3G133340Melon (DHL92) v3.5.1cumeB231
Csa3G133340Melon (DHL92) v3.5.1cumeB236
Csa3G133340Watermelon (Charleston Gray)cuwcgB222
Csa3G133340Watermelon (Charleston Gray)cuwcgB246
Csa3G133340Watermelon (Charleston Gray)cuwcgB255
Csa3G133340Watermelon (97103) v1cuwmB223
Csa3G133340Watermelon (97103) v1cuwmB233
Csa3G133340Watermelon (97103) v1cuwmB279