Csa3G131400 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G131400
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein; contains IPR000668 (Peptidase C1A, papain C-terminal)
LocationChr3 : 8506630 .. 8506875 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTGGTAAGGATAGATGACTACAACATTGTACGTCCAAGTGAGTTGGCTTTAAAGGTCTTGTTAAGCAAACACCCGGTCTGTATCAGCATTTCTGTTGATGAACATGGTAGTTTTAAAAGATACGGAGGCGGAATTTACAAAGGTCCGTTCCCAGAAAAATCAAATCATTCCATGTTAGCAGTACGGTATACTTCAAAAACTCATGGGGAGGTAGATGGGGAGAAAATGGATATTGCATAA

mRNA sequence

ATGCAGGTGGTAAGGATAGATGACTACAACATTGTACGTCCAAGTGAGTTGGCTTTAAAGGTCTTGTTAAGCAAACACCCGGTCTGTATCAGCATTTCTGTTGATGAACATGGTAGTTTTAAAAGATACGGAGGCGGAATTTACAAAGGTCCGTTCCCAGAAAAATCAAATCATTCCATGTTAGCAGTACGGTATACTTCAAAAACTCATGGGGAGGTAGATGGGGAGAAAATGGATATTGCATAA

Coding sequence (CDS)

ATGCAGGTGGTAAGGATAGATGACTACAACATTGTACGTCCAAGTGAGTTGGCTTTAAAGGTCTTGTTAAGCAAACACCCGGTCTGTATCAGCATTTCTGTTGATGAACATGGTAGTTTTAAAAGATACGGAGGCGGAATTTACAAAGGTCCGTTCCCAGAAAAATCAAATCATTCCATGTTAGCAGTACGGTATACTTCAAAAACTCATGGGGAGGTAGATGGGGAGAAAATGGATATTGCATAA

Protein sequence

MQVVRIDDYNIVRPSELALKVLLSKHPVCISISVDEHGSFKRYGGGIYKGPFPEKSNHSMLAVRYTSKTHGEVDGEKMDIA*
Homology
[Close]
BLAST of Csa3G131400 vs. TrEMBL
Match: A0A0A0L9E9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G131400 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 6.6e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 1  MQVVRIDDYNIVRPSELALKVLLSKHPVCISISVDEHGSFKRYGGGIYKGPFPEKSNHSM 60
          MQVVRIDDYNIVRPSELALKVLLSKHPVCISISVDEHGSFKRYGGGIYKGPFPEKSNHSM
Sbjct: 1  MQVVRIDDYNIVRPSELALKVLLSKHPVCISISVDEHGSFKRYGGGIYKGPFPEKSNHSM 60

Query: 61 LAVRYTSKTHGEVDGEKMDIA 82
          LAVRYTSKTHGEVDGEKMDIA
Sbjct: 61 LAVRYTSKTHGEVDGEKMDIA 81

[Close]
BLAST of Csa3G131400 vs. NCBI nr
Match: gi|700201603|gb|KGN56736.1| (hypothetical protein Csa_3G131400 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 9.4e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 1  MQVVRIDDYNIVRPSELALKVLLSKHPVCISISVDEHGSFKRYGGGIYKGPFPEKSNHSM 60
          MQVVRIDDYNIVRPSELALKVLLSKHPVCISISVDEHGSFKRYGGGIYKGPFPEKSNHSM
Sbjct: 1  MQVVRIDDYNIVRPSELALKVLLSKHPVCISISVDEHGSFKRYGGGIYKGPFPEKSNHSM 60

Query: 61 LAVRYTSKTHGEVDGEKMDIA 82
          LAVRYTSKTHGEVDGEKMDIA
Sbjct: 61 LAVRYTSKTHGEVDGEKMDIA 81

[Close]
BLAST of Csa3G131400 vs. NCBI nr
Match: gi|778688435|ref|XP_011652749.1| (PREDICTED: mexicain [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 1 

Query: 2  QVVRIDDYNIVRPSELALKVLLSKHPVCISISVDEHGSFKRYGGGIYKGPFPEKSNHSML 61
          +VVRIDDYNIVRPSE ALK LLSKHPVCISISVDE+G ++ Y G +Y GP  E +NHSML
Sbjct: 3  EVVRIDDYNIVRPSEWALKSLLSKHPVCISISVDEYGMYRNYRGRLYYGPLGEIANHSML 62

Query: 62 AVRYT 67
          AV Y+
Sbjct: 63 AVGYS 67

The following BLAST results are available for this feature:
BLAST of Csa3G131400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9E9_CUCSA6.6e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G131400 PE=4 SV=1[more]
BLAST of Csa3G131400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201603|gb|KGN56736.1|9.4e-39100.00hypothetical protein Csa_3G131400 [Cucumis sativus][more]
gi|778688435|ref|XP_011652749.1|1.2e-1772.31PREDICTED: mexicain [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000668Peptidase_C1A_C
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0008234 cysteine-type peptidase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G131400.1Csa3G131400.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000668Peptidase C1A, papain C-terminalPFAMPF00112Peptidase_C1coord: 3..69
score: 2.
NoneNo IPR availableGENE3DG3DSA:3.90.70.10coord: 3..68
score: 5.
NoneNo IPR availableunknownSSF54001Cysteine proteinasescoord: 3..68
score: 7.0