Csa3G130300 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G130300
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	S-adenosylmethionine-dependent methyltransferase, putative
Location	Chr3 : 8430363 .. 8430898 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAGTGAGTATAAACACTCTGAAAAGAAGTTGTGTGTTTATTTTAGGCTTTGTTTTCAATTGTATCTTATAAGTGTTTCCTGTGCAGGTCTTCAATCACCTCTTTTCCCTTCAACTTGAGGAGGATGTGAATGAAGTGCTATTTGCTCTTCCTTCAGATTTATGCATAAAGGAGGATCATCTCTTCAATGAAGCATCTCTTCAACTTGAGAAACTTCTAAATTTGAAACACCTAGAAATGAGGCAGAGCATAGTTGATGCTACAACGAAGATCAGATGTTTGAAGTAGAAGCTAGCACTTTCTTTGAAAAATATTGTAATGTACAGTAAGATATATGTTCCCTTTATAGATTTAAGTTTATCAAGAAAATAATAGGGTGGAGTTATTTTTGCTTAGAAGAATGTTGATTCATGGCCATGCTAGAAAGGCTGAAACATATTCATATTTCTCTTGATTCAATTTTTGTGTTCTGACTATATATATTATGTTTTGTGGTAACTTTGCCACATTGAGAGTTTGATTGATCGTAA

mRNA sequence

ATGAAAGGAGTCTTCAATCACCTCTTTTCCCTTCAACTTGAGGAGGATGTGAATGAAGTGCTATTTGCTCTTCCTTCAGATTTATGCATAAAGGAGGATCATCTCTTCAATGAAGCATCTCTTCAACTTGAGAAACTTCTAAATTTGAAACACCTAGAAATGAGGCAGAGCATAGTTGATGCTACAACGAAGATCAGATGTTTGAAGTAG

Coding sequence (CDS)

ATGAAAGGAGTCTTCAATCACCTCTTTTCCCTTCAACTTGAGGAGGATGTGAATGAAGTGCTATTTGCTCTTCCTTCAGATTTATGCATAAAGGAGGATCATCTCTTCAATGAAGCATCTCTTCAACTTGAGAAACTTCTAAATTTGAAACACCTAGAAATGAGGCAGAGCATAGTTGATGCTACAACGAAGATCAGATGTTTGAAGTAG

Protein sequence

MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVDATTKIRCLK*

Homology

[Close]

BLAST of Csa3G130300 vs. TrEMBL
Match: A0A0A0L6Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G130300 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.1e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD 60
          MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD
Sbjct: 1  MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD 60

Query: 61 ATTKIRCLK 70
          ATTKIRCLK
Sbjct: 61 ATTKIRCLK 69

[Close]

BLAST of Csa3G130300 vs. TrEMBL
Match: B9GFU7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s32510g PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-15
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 1   MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD 60
           MK VFNHLFSLQLEED+N VLF L S++C+KED  F EA+ QL+KLL  KH E+ QSI+D
Sbjct: 712 MKAVFNHLFSLQLEEDINMVLFGLCSEVCLKED-CFPEAACQLDKLLKFKHQEIGQSIID 771

Query: 61  ATTKIRCLK 70
           +T KIR LK
Sbjct: 772 STKKIRRLK 779

[Close]

BLAST of Csa3G130300 vs. TrEMBL
Match: B9RWD4_RICCO (S-adenosylmethionine-dependent methyltransferase, putative OS=Ricinus communis GN=RCOM_1018080 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-15
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 1   MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD 60
           MK VF+HLFSLQLEEDVN VLF L S+ C+KED  F EA+LQLEKLL  KH E+ Q ++D
Sbjct: 694 MKTVFSHLFSLQLEEDVNMVLFGLCSESCMKEDS-FPEAALQLEKLLKFKHPEIGQKVID 753

Query: 61  ATTKIRCLK 70
            T KI+CLK
Sbjct: 754 TTKKIKCLK 761

[Close]

BLAST of Csa3G130300 vs. TrEMBL
Match: A0A067DJT2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004133mg PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-14
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 1   MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD 60
           MK VFNHLF LQLEEDVN VLF L S+ CIK D+ F EA++QL KL+  +HLE+ QSI+D
Sbjct: 705 MKMVFNHLFCLQLEEDVNLVLFGLSSESCIK-DNSFPEAAVQLGKLVKFQHLEISQSIMD 764

Query: 61  ATTKIRCLK 70
           A  KIRCLK
Sbjct: 765 AAKKIRCLK 772

[Close]

BLAST of Csa3G130300 vs. TrEMBL
Match: A0A067DFR7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004133mg PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-14
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 1   MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD 60
           MK VFNHLF LQLEEDVN VLF L S+ CIK D+ F EA++QL KL+  +HLE+ QSI+D
Sbjct: 704 MKMVFNHLFCLQLEEDVNLVLFGLSSESCIK-DNSFPEAAVQLGKLVKFQHLEISQSIMD 763

Query: 61  ATTKIRCLK 70
           A  KIRCLK
Sbjct: 764 AAKKIRCLK 771

[Close]

BLAST of Csa3G130300 vs. TAIR10
Match: AT2G31740.1 (AT2G31740.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-11
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 1   MKGVFNHLFSLQLEE--DVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSI 60
           MK VF+HLF LQLEE  DVN VLF L S+  I E+ +  E+++ LE LL  + LE +QSI
Sbjct: 691 MKKVFDHLFGLQLEEEDDVNVVLFGLCSESVISENDI-PESAVILEGLLKCQRLETKQSI 750

Query: 61  VDATTKIRCLK 70
           +DAT K++C K
Sbjct: 751 IDATKKLKCWK 760

[Close]

BLAST of Csa3G130300 vs. NCBI nr
Match: gi|449432402|ref|XP_004133988.1| (PREDICTED: methyltransferase-like protein 13 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 3.1e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD 60
           MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD
Sbjct: 684 MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD 743

Query: 61  ATTKIRCLK 70
           ATTKIRCLK
Sbjct: 744 ATTKIRCLK 752

[Close]

BLAST of Csa3G130300 vs. NCBI nr
Match: gi|700201591|gb|KGN56724.1| (hypothetical protein Csa_3G130300 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 3.1e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD 60
          MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD
Sbjct: 1  MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD 60

Query: 61 ATTKIRCLK 70
          ATTKIRCLK
Sbjct: 61 ATTKIRCLK 69

[Close]

BLAST of Csa3G130300 vs. NCBI nr
Match: gi|659075820|ref|XP_008438348.1| (PREDICTED: methyltransferase-like protein 13 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-27
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1   MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD 60
           MKGVFNHLFSLQLEEDVNEVLFALPSDL IKEDHLFNEASLQLEKLLNLKHLEMRQSIVD
Sbjct: 684 MKGVFNHLFSLQLEEDVNEVLFALPSDLGIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD 743

Query: 61  ATTKIRCLK 70
           AT +IRCLK
Sbjct: 744 ATKEIRCLK 752

[Close]

BLAST of Csa3G130300 vs. NCBI nr
Match: gi|255554026|ref|XP_002518053.1| (PREDICTED: methyltransferase-like protein 13 isoform X1 [Ricinus communis])

HSP 1 Score: 89.0 bits (219), Expect = 3.6e-15
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 1   MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD 60
           MK VF+HLFSLQLEEDVN VLF L S+ C+KED  F EA+LQLEKLL  KH E+ Q ++D
Sbjct: 694 MKTVFSHLFSLQLEEDVNMVLFGLCSESCMKEDS-FPEAALQLEKLLKFKHPEIGQKVID 753

Query: 61  ATTKIRCLK 70
            T KI+CLK
Sbjct: 754 TTKKIKCLK 761

[Close]

BLAST of Csa3G130300 vs. NCBI nr
Match: gi|743904487|ref|XP_011045618.1| (PREDICTED: methyltransferase-like protein 13 [Populus euphratica])

HSP 1 Score: 89.0 bits (219), Expect = 3.6e-15
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 1   MKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVD 60
           MK VFNHLFSLQLEED+N VLF L S++C+KED  F EA+ QL+KLL  KH E+ QSI+D
Sbjct: 710 MKAVFNHLFSLQLEEDINMVLFGLCSEVCLKED-CFPEAACQLDKLLKFKHQEIGQSIID 769

Query: 61  ATTKIRCLK 70
           +T KIR LK
Sbjct: 770 STKKIRRLK 777

The following BLAST results are available for this feature:

BLAST of Csa3G130300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6Q7_CUCSA	2.1e-30	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G130300 PE=4 SV=1	[more]
B9GFU7_POPTR	2.5e-15	66.67	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s32510g PE=4 SV=1	[more]
B9RWD4_RICCO	2.5e-15	66.67	S-adenosylmethionine-dependent methyltransferase, putative OS=Ricinus communis G...	[more]
A0A067DJT2_CITSI	1.3e-14	66.67	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004133mg PE=4 SV=1	[more]
A0A067DFR7_CITSI	1.3e-14	66.67	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004133mg PE=4 SV=1	[more]

BLAST of Csa3G130300 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31740.1	2.0e-11	53.52	S-adenosyl-L-methionine-dependent methyltransferases superfamily pro...	[more]

BLAST of Csa3G130300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432402\|ref\|XP_004133988.1\|	3.1e-30	100.00	PREDICTED: methyltransferase-like protein 13 [Cucumis sativus]	[more]
gi\|700201591\|gb\|KGN56724.1\|	3.1e-30	100.00	hypothetical protein Csa_3G130300 [Cucumis sativus]	[more]
gi\|659075820\|ref\|XP_008438348.1\|	1.1e-27	95.65	PREDICTED: methyltransferase-like protein 13 [Cucumis melo]	[more]
gi\|255554026\|ref\|XP_002518053.1\|	3.6e-15	66.67	PREDICTED: methyltransferase-like protein 13 isoform X1 [Ricinus communis]	[more]
gi\|743904487\|ref\|XP_011045618.1\|	3.6e-15	66.67	PREDICTED: methyltransferase-like protein 13 [Populus euphratica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU169383	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G130300.1	Csa3G130300.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU169383	CU169383	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G130300	Cla021410	Watermelon (97103) v1	cuwmB233
Csa3G130300	MELO3C006304	Melon (DHL92) v3.5.1	cumeB236
Csa3G130300	ClCG05G003230	Watermelon (Charleston Gray)	cuwcgB222
Csa3G130300	Lsi05G018510	Bottle gourd (USVL1VR-Ls)	culsiB209
Csa3G130300	MELO3C006304.2	Melon (DHL92) v3.6.1	cumedB223
Csa3G130300	Cla97C05G083870	Watermelon (97103) v2	cuwmbB204
Csa3G130300	Bhi01G000154	Wax gourd	cuwgoB270
Csa3G130300	CSPI03G10750	Wild cucumber (PI 183967)	cpicuB120
Csa3G130300	CmaCh06G012370	Cucurbita maxima (Rimu)	cmacuB832
Csa3G130300	CmoCh06G012450	Cucurbita moschata (Rifu)	cmocuB806
Csa3G130300	Cp4.1LG08g02820	Cucurbita pepo (Zucchini)	cpecuB859
Csa3G130300	CsGy3G010820	Cucumber (Gy14) v2	cgybcuB109
Csa3G130300	Carg06298	Silver-seed gourd	carcuB0975

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G130300	Wax gourd	cuwgoB303
Csa3G130300	Cucumber (Gy14) v1	cgycuB366
Csa3G130300	Cucurbita maxima (Rimu)	cmacuB253
Csa3G130300	Cucurbita maxima (Rimu)	cmacuB814
Csa3G130300	Cucurbita moschata (Rifu)	cmocuB239
Csa3G130300	Cucurbita moschata (Rifu)	cmocuB872
Csa3G130300	Watermelon (Charleston Gray)	cuwcgB255
Csa3G130300	Watermelon (97103) v1	cuwmB223
Csa3G130300	Cucurbita pepo (Zucchini)	cpecuB609
Csa3G130300	Silver-seed gourd	carcuB0193
Csa3G130300	Silver-seed gourd	carcuB1093
Csa3G130300	Watermelon (97103) v2	cuwmbB231
Csa3G130300	Watermelon (97103) v2	cuwmbB241