Csa3G129740 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G129740
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 8391057 .. 8391452 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTTGAAGCTGGAGATCGAAGAAGGAACGAATCGGATCGGAAAGCGAATGGAAATGAAACGGAGGGAAAAAGGAGAAGAGAGAGAGAGAAAGGGAATGTGGGAATTGGGAGCGCTAAGTGGCGAACGGTGAGTCCGTTACATTTTTGTTTTCTTTTTCCTTTTATTATTATCATCATCACCATCATTATTATTATTAAATGGTTATTTTAATTTGATAAAAAAAAAAATATTGTCCACAATTTAAAACTTCCGCCACCGAATCCCGCGTTTCTTTTGCAGTTACGTCTTGCTATCTTTGTTATTTATTGCAACGAAACTGAAAGAAACTACGACCCCGTTTCGCTTCTCTCTATAATTTGGGTGGGAATTCAAACTTCCTCTACAACTTAG

mRNA sequence

ATGGATTTTGAAGCTGGAGATCGAAGAAGGAACGAATCGGATCGGAAAGCGAATGGAAATGAAACGGAGGGAAAAAGGAGAAGAGAGAGAGAGAAAGGGAATGTGGGAATTGGGAGCGCTAAGTGGCGAACGTTACGTCTTGCTATCTTTGTTATTTATTGCAACGAAACTGAAAGAAACTACGACCCCGTTTCGCTTCTCTCTATAATTTGGGTGGGAATTCAAACTTCCTCTACAACTTAG

Coding sequence (CDS)

ATGGATTTTGAAGCTGGAGATCGAAGAAGGAACGAATCGGATCGGAAAGCGAATGGAAATGAAACGGAGGGAAAAAGGAGAAGAGAGAGAGAGAAAGGGAATGTGGGAATTGGGAGCGCTAAGTGGCGAACGTTACGTCTTGCTATCTTTGTTATTTATTGCAACGAAACTGAAAGAAACTACGACCCCGTTTCGCTTCTCTCTATAATTTGGGTGGGAATTCAAACTTCCTCTACAACTTAG

Protein sequence

MDFEAGDRRRNESDRKANGNETEGKRRREREKGNVGIGSAKWRTLRLAIFVIYCNETERNYDPVSLLSIIWVGIQTSSTT*
Homology
[Close]
BLAST of Csa3G129740 vs. TrEMBL
Match: A0A0A0L7W6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129740 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.2e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MDFEAGDRRRNESDRKANGNETEGKRRREREKGNVGIGSAKWRTLRLAIFVIYCNETERN 60
          MDFEAGDRRRNESDRKANGNETEGKRRREREKGNVGIGSAKWRTLRLAIFVIYCNETERN
Sbjct: 1  MDFEAGDRRRNESDRKANGNETEGKRRREREKGNVGIGSAKWRTLRLAIFVIYCNETERN 60

Query: 61 YDPVSLLSIIWVGIQTSSTT 81
          YDPVSLLSIIWVGIQTSSTT
Sbjct: 61 YDPVSLLSIIWVGIQTSSTT 80

[Close]
BLAST of Csa3G129740 vs. NCBI nr
Match: gi|700201584|gb|KGN56717.1| (hypothetical protein Csa_3G129740 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 4.6e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MDFEAGDRRRNESDRKANGNETEGKRRREREKGNVGIGSAKWRTLRLAIFVIYCNETERN 60
          MDFEAGDRRRNESDRKANGNETEGKRRREREKGNVGIGSAKWRTLRLAIFVIYCNETERN
Sbjct: 1  MDFEAGDRRRNESDRKANGNETEGKRRREREKGNVGIGSAKWRTLRLAIFVIYCNETERN 60

Query: 61 YDPVSLLSIIWVGIQTSSTT 81
          YDPVSLLSIIWVGIQTSSTT
Sbjct: 61 YDPVSLLSIIWVGIQTSSTT 80

The following BLAST results are available for this feature:
BLAST of Csa3G129740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7W6_CUCSA3.2e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129740 PE=4 SV=1[more]
BLAST of Csa3G129740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201584|gb|KGN56717.1|4.6e-38100.00hypothetical protein Csa_3G129740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU101388cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G129740.1Csa3G129740.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU101388CU101388transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G129740Silver-seed gourdcarcuB0193
Csa3G129740Silver-seed gourdcarcuB0975
Csa3G129740Silver-seed gourdcarcuB1093
Csa3G129740Watermelon (97103) v2cuwmbB204
Csa3G129740Watermelon (97103) v2cuwmbB231
Csa3G129740Wax gourdcuwgoB270
Csa3G129740Cucumber (Gy14) v1cgycuB366
Csa3G129740Cucurbita maxima (Rimu)cmacuB253
Csa3G129740Cucurbita maxima (Rimu)cmacuB814
Csa3G129740Cucurbita moschata (Rifu)cmocuB239
Csa3G129740Cucurbita moschata (Rifu)cmocuB806
Csa3G129740Cucurbita moschata (Rifu)cmocuB872
Csa3G129740Melon (DHL92) v3.5.1cumeB236
Csa3G129740Watermelon (Charleston Gray)cuwcgB222
Csa3G129740Watermelon (97103) v1cuwmB233
Csa3G129740Cucurbita pepo (Zucchini)cpecuB609
Csa3G129740Cucurbita pepo (Zucchini)cpecuB859
Csa3G129740Bottle gourd (USVL1VR-Ls)culsiB209
Csa3G129740Cucumber (Gy14) v2cgybcuB109
Csa3G129740Melon (DHL92) v3.6.1cumedB223