Csa3G129570 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G129570
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 8298191 .. 8298412 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCAACAAATCTGACCTTAACTTACAGTTTCGGCCAGACGAGCAGCGATAGAAGCGGCGCGGAGTGGCAATCGACAGGCAGTGAGCGGCGCGGCTTAAAGGACTGCACGGCTGGGCTCGGCTCAGCGAACGTTGGCCGAGCGGGGCGCAAACACCCGAGGGCGGCGGCTGAAGAGCATGGACTCGGGGTGGGCTGCGTGGTTGAGGGAGGAGAATAA

mRNA sequence

ATGTCACCAACAAATCTGACCTTAACTTACAGTTTCGGCCAGACGAGCAGCGATAGAAGCGGCGCGGAGTGGCAATCGACAGGCAGTGAGCGGCGCGGCTTAAAGGACTGCACGGCTGGGCTCGGCTCAGCGAACGTTGGCCGAGCGGGGCGCAAACACCCGAGGGCGGCGGCTGAAGAGCATGGACTCGGGGTGGGCTGCGTGGTTGAGGGAGGAGAATAA

Coding sequence (CDS)

ATGTCACCAACAAATCTGACCTTAACTTACAGTTTCGGCCAGACGAGCAGCGATAGAAGCGGCGCGGAGTGGCAATCGACAGGCAGTGAGCGGCGCGGCTTAAAGGACTGCACGGCTGGGCTCGGCTCAGCGAACGTTGGCCGAGCGGGGCGCAAACACCCGAGGGCGGCGGCTGAAGAGCATGGACTCGGGGTGGGCTGCGTGGTTGAGGGAGGAGAATAA

Protein sequence

MSPTNLTLTYSFGQTSSDRSGAEWQSTGSERRGLKDCTAGLGSANVGRAGRKHPRAAAEEHGLGVGCVVEGGE*
Homology
[Close]
BLAST of Csa3G129570 vs. TrEMBL
Match: A0A0A0L408_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129570 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MSPTNLTLTYSFGQTSSDRSGAEWQSTGSERRGLKDCTAGLGSANVGRAGRKHPRAAAEE 60
          MSPTNLTLTYSFGQTSSDRSGAEWQSTGSERRGLKDCTAGLGSANVGRAGRKHPRAAAEE
Sbjct: 1  MSPTNLTLTYSFGQTSSDRSGAEWQSTGSERRGLKDCTAGLGSANVGRAGRKHPRAAAEE 60

Query: 61 HGLGVGCVVEGGE 74
          HGLGVGCVVEGGE
Sbjct: 61 HGLGVGCVVEGGE 73

[Close]
BLAST of Csa3G129570 vs. NCBI nr
Match: gi|700201567|gb|KGN56700.1| (hypothetical protein Csa_3G129570 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MSPTNLTLTYSFGQTSSDRSGAEWQSTGSERRGLKDCTAGLGSANVGRAGRKHPRAAAEE 60
          MSPTNLTLTYSFGQTSSDRSGAEWQSTGSERRGLKDCTAGLGSANVGRAGRKHPRAAAEE
Sbjct: 1  MSPTNLTLTYSFGQTSSDRSGAEWQSTGSERRGLKDCTAGLGSANVGRAGRKHPRAAAEE 60

Query: 61 HGLGVGCVVEGGE 74
          HGLGVGCVVEGGE
Sbjct: 61 HGLGVGCVVEGGE 73

The following BLAST results are available for this feature:
BLAST of Csa3G129570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L408_CUCSA1.5e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129570 PE=4 SV=1[more]
BLAST of Csa3G129570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201567|gb|KGN56700.1|2.2e-34100.00hypothetical protein Csa_3G129570 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU101388cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G129570.1Csa3G129570.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU101388CU101388transcribed_cluster