Csa3G129500 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G129500
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 8264347 .. 8265346 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCATCAATTAATTACATATATGGTTTTTCCCATTTTTCTCTATGAAAGATTCGAGAAGTCCAGAAGAATTTGGAGACTATAAGTGGATGAAATTCATGTTCCTTAACTAACCCATTACTCGATTTGACTTCCACACCTTTCTTCTTTCGCCATTCTTACTGTTTTTAGCTCATAAGCAGCTCGATTTGGCAATTTTTTTCCTCCATCGCACCTGGCAAAGAATTTGAGCTCGAGATCTCTTGGGTTTTGTTAGACATCATTTGGGTAATTCATTATTTTGTTTTACTGTCAATTAATGGCTGATGAATCAATCCCTGTTCTGAATAAGGATATGTTTGTTGGATTGTTGTTTAAATTTTATGTTTCTGGATATGGTGGGGATGTCTTGTCCGTTCTGGTATGTTCGTTTTTAGTTTGGGTTTTATTCTTTTGGAAGCCAAATTGCGGGGTTCAAATCACCACTTTGGTGAAAATACTACATGGGTTTTATGTTTTTATTTCTGTGAAAATGGATCTGATATGGACTTTGATTTTTTATTTACAATTTCTCATCGCTATTATTTTTCTGGGTTGTACTGGTTTTCTGATATATTGCTGTTGCTTAGTTGAATCAGCCAGTTGAGTTCTTATTTGTAATTGTAAATATTCAACGGTTGTTTGCCATTTCCAATCCCAGCTTCTGATTGTAATTGGCTTGTTTATCTCTCTTGTTTATTGTGCTTTCTTGCACCTGTGGCCAACATTATGAGTATCTCGTTTCATTTTTCAATCCCATAGCTCATGTGGTTAATGATTCATCAAAATGAATCTTGATCCGGATGTAGCATCAAGCATACTTCACTAGCATTTCATTAGGTTCATGTGCAATATATTTCTTCATGAGTGTTTAGTAAAGACGATGAGGAAGTGTTATTCAAACTTTTTTCAAATGGGAACTAGGAATCTGTCTATTTTTGTGCTCTCGACTTTTGGTTTTTCCCGATCTTTTCACACTGTCG

mRNA sequence

ATGGCTGATGAATCAATCCCTGTTCTGAATAAGGATATGTTTGTTGGATTGTTGTTTAAATTTTATGTTTCTGGATATGGTGGGGATGTCTTGTCCGTTCTGGTATGTTCGTTTTTAGTTTGGGTTTTATTCTTTTGGAAGCCAAATTGCGGGGTTCAAATCACCACTTTGGTGAAAATACTACATGGGTTTTATGTTTTTATTTCTGTGAAAATGGATCTGATATGGACTTTGATTTTTTATTTACAATTTCTCATCGCTATTATTTTTCTGGGTTGTACTGGTTTTCTGATATATTGCTGTTGCTTAGTTGAATCAGCCAGTTGA

Coding sequence (CDS)

ATGGCTGATGAATCAATCCCTGTTCTGAATAAGGATATGTTTGTTGGATTGTTGTTTAAATTTTATGTTTCTGGATATGGTGGGGATGTCTTGTCCGTTCTGGTATGTTCGTTTTTAGTTTGGGTTTTATTCTTTTGGAAGCCAAATTGCGGGGTTCAAATCACCACTTTGGTGAAAATACTACATGGGTTTTATGTTTTTATTTCTGTGAAAATGGATCTGATATGGACTTTGATTTTTTATTTACAATTTCTCATCGCTATTATTTTTCTGGGTTGTACTGGTTTTCTGATATATTGCTGTTGCTTAGTTGAATCAGCCAGTTGA

Protein sequence

MADESIPVLNKDMFVGLLFKFYVSGYGGDVLSVLVCSFLVWVLFFWKPNCGVQITTLVKILHGFYVFISVKMDLIWTLIFYLQFLIAIIFLGCTGFLIYCCCLVESAS*
Homology
[Close]
BLAST of Csa3G129500 vs. TrEMBL
Match: A0A0A0L7U5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129500 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MADESIPVLNKDMFVGLLFKFYVSGYGGDVLSVLVCSFLVWVLFFWKPNCGVQITTLVKI 60
           MADESIPVLNKDMFVGLLFKFYVSGYGGDVLSVLVCSFLVWVLFFWKPNCGVQITTLVKI
Sbjct: 1   MADESIPVLNKDMFVGLLFKFYVSGYGGDVLSVLVCSFLVWVLFFWKPNCGVQITTLVKI 60

Query: 61  LHGFYVFISVKMDLIWTLIFYLQFLIAIIFLGCTGFLIYCCCLVESAS 109
           LHGFYVFISVKMDLIWTLIFYLQFLIAIIFLGCTGFLIYCCCLVESAS
Sbjct: 61  LHGFYVFISVKMDLIWTLIFYLQFLIAIIFLGCTGFLIYCCCLVESAS 108

[Close]
BLAST of Csa3G129500 vs. NCBI nr
Match: gi|700201559|gb|KGN56692.1| (hypothetical protein Csa_3G129500 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 2.3e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MADESIPVLNKDMFVGLLFKFYVSGYGGDVLSVLVCSFLVWVLFFWKPNCGVQITTLVKI 60
           MADESIPVLNKDMFVGLLFKFYVSGYGGDVLSVLVCSFLVWVLFFWKPNCGVQITTLVKI
Sbjct: 1   MADESIPVLNKDMFVGLLFKFYVSGYGGDVLSVLVCSFLVWVLFFWKPNCGVQITTLVKI 60

Query: 61  LHGFYVFISVKMDLIWTLIFYLQFLIAIIFLGCTGFLIYCCCLVESAS 109
           LHGFYVFISVKMDLIWTLIFYLQFLIAIIFLGCTGFLIYCCCLVESAS
Sbjct: 61  LHGFYVFISVKMDLIWTLIFYLQFLIAIIFLGCTGFLIYCCCLVESAS 108

The following BLAST results are available for this feature:
BLAST of Csa3G129500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7U5_CUCSA1.6e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129500 PE=4 SV=1[more]
BLAST of Csa3G129500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201559|gb|KGN56692.1|2.3e-56100.00hypothetical protein Csa_3G129500 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU101388cucumber EST collection version 3.0transcribed_cluster
CU133737cucumber EST collection version 3.0transcribed_cluster
CU144960cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G129500.1Csa3G129500.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU101388CU101388transcribed_cluster
CU133737CU133737transcribed_cluster
CU144960CU144960transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G129500Wax gourdcuwgoB270
Csa3G129500Cucumber (Chinese Long) v2cucuB089
Csa3G129500Cucumber (Gy14) v1cgycuB366
Csa3G129500Cucumber (Gy14) v1cgycuB460
Csa3G129500Cucurbita maxima (Rimu)cmacuB253
Csa3G129500Cucurbita maxima (Rimu)cmacuB357
Csa3G129500Cucurbita maxima (Rimu)cmacuB814
Csa3G129500Cucurbita moschata (Rifu)cmocuB239
Csa3G129500Cucurbita moschata (Rifu)cmocuB348
Csa3G129500Cucurbita moschata (Rifu)cmocuB806
Csa3G129500Melon (DHL92) v3.5.1cumeB236
Csa3G129500Watermelon (Charleston Gray)cuwcgB181
Csa3G129500Watermelon (Charleston Gray)cuwcgB222
Csa3G129500Watermelon (97103) v1cuwmB187
Csa3G129500Watermelon (97103) v1cuwmB207
Csa3G129500Watermelon (97103) v1cuwmB233
Csa3G129500Cucurbita pepo (Zucchini)cpecuB135
Csa3G129500Cucurbita pepo (Zucchini)cpecuB609
Csa3G129500Cucurbita pepo (Zucchini)cpecuB859
Csa3G129500Bottle gourd (USVL1VR-Ls)culsiB209
Csa3G129500Bottle gourd (USVL1VR-Ls)culsiB223
Csa3G129500Bottle gourd (USVL1VR-Ls)culsiB232
Csa3G129500Cucumber (Gy14) v2cgybcuB109
Csa3G129500Cucumber (Gy14) v2cgybcuB116
Csa3G129500Melon (DHL92) v3.6.1cumedB223
Csa3G129500Silver-seed gourdcarcuB0257
Csa3G129500Silver-seed gourdcarcuB0644
Csa3G129500Silver-seed gourdcarcuB0975
Csa3G129500Silver-seed gourdcarcuB1093
Csa3G129500Watermelon (97103) v2cuwmbB204
Csa3G129500Watermelon (97103) v2cuwmbB185
Csa3G129500Watermelon (97103) v2cuwmbB231