Csa3G128940 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G128940
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 8232506 .. 8233060 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCCTATCTTTCTCATCCTGAAGAGTTTCTAAATAACCCTCTTAGAAGTTTGAATGTTTAAGAGTCATTACTGAAAGTTTAAGAGTGTAATTGTAACTATCACCATACTCTATAAGTGAATTTTATAACGTGTCCTGGTCCATTTCTTTATTTAAGAGAGGTTGCAACCAACCAACAAGAGATGACAAAGATAGATATAATTGATAAAATAAAAAATTTAAGAATGCAATTGTTACAAACCTAATTTAGGGAGGGTTTGTTTAATTTTTGTATTAATTCATTATTTAGATTGGGCTGAAATCGTTTCAACAGCCCAACTAGCAGACGAGCTTCTCAACAGAGCCCAATTTTCGGCCCAAATTCAGCTGAGTAAGGCCCATTTCAGAAACAACATGCCCATTTGCCAAAACGTCGTCTTCCTTCTTGACCATACAAAACAAAGTCCCGTTCGTAGTTCCTTCCCGCCTCTTTCGCCGGCATTTACGCTCCAGCTACTCGCCGTCCGGCGAGTTATCGCCGATCATACTGCGCGTTGGAATGGAATTCGGTAG

mRNA sequence

ATGTTCCCTATCTTTCTCATCCTGAAGAATTGGGCTGAAATCGTTTCAACAGCCCAACTAGCAGACGAGCTTCTCAACAGAGCCCAATTTTCGGCCCAAATTCAGCTGAGTAAGGCCCATTTCAGAAACAACATGCCCATTTGCCAAAACGTCGTCTTCCTTCTTGACCATACAAAACAAAGTCCCGTTCGTAGTTCCTTCCCGCCTCTTTCGCCGGCATTTACGCTCCAGCTACTCGCCGTCCGGCGAGTTATCGCCGATCATACTGCGCGTTGGAATGGAATTCGGTAG

Coding sequence (CDS)

ATGTTCCCTATCTTTCTCATCCTGAAGAATTGGGCTGAAATCGTTTCAACAGCCCAACTAGCAGACGAGCTTCTCAACAGAGCCCAATTTTCGGCCCAAATTCAGCTGAGTAAGGCCCATTTCAGAAACAACATGCCCATTTGCCAAAACGTCGTCTTCCTTCTTGACCATACAAAACAAAGTCCCGTTCGTAGTTCCTTCCCGCCTCTTTCGCCGGCATTTACGCTCCAGCTACTCGCCGTCCGGCGAGTTATCGCCGATCATACTGCGCGTTGGAATGGAATTCGGTAG

Protein sequence

MFPIFLILKNWAEIVSTAQLADELLNRAQFSAQIQLSKAHFRNNMPICQNVVFLLDHTKQSPVRSSFPPLSPAFTLQLLAVRRVIADHTARWNGIR*
Homology
[Close]
BLAST of Csa3G128940 vs. TrEMBL
Match: A0A0A0L994_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G128940 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 7.8e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MFPIFLILKNWAEIVSTAQLADELLNRAQFSAQIQLSKAHFRNNMPICQNVVFLLDHTKQ 60
          MFPIFLILKNWAEIVSTAQLADELLNRAQFSAQIQLSKAHFRNNMPICQNVVFLLDHTKQ
Sbjct: 1  MFPIFLILKNWAEIVSTAQLADELLNRAQFSAQIQLSKAHFRNNMPICQNVVFLLDHTKQ 60

Query: 61 SPVRSSFPPLSPAFTLQLLAVRRVIADHTARWNGIR 97
          SPVRSSFPPLSPAFTLQLLAVRRVIADHTARWNGIR
Sbjct: 61 SPVRSSFPPLSPAFTLQLLAVRRVIADHTARWNGIR 96

[Close]
BLAST of Csa3G128940 vs. NCBI nr
Match: gi|700201553|gb|KGN56686.1| (hypothetical protein Csa_3G128940 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MFPIFLILKNWAEIVSTAQLADELLNRAQFSAQIQLSKAHFRNNMPICQNVVFLLDHTKQ 60
          MFPIFLILKNWAEIVSTAQLADELLNRAQFSAQIQLSKAHFRNNMPICQNVVFLLDHTKQ
Sbjct: 1  MFPIFLILKNWAEIVSTAQLADELLNRAQFSAQIQLSKAHFRNNMPICQNVVFLLDHTKQ 60

Query: 61 SPVRSSFPPLSPAFTLQLLAVRRVIADHTARWNGIR 97
          SPVRSSFPPLSPAFTLQLLAVRRVIADHTARWNGIR
Sbjct: 61 SPVRSSFPPLSPAFTLQLLAVRRVIADHTARWNGIR 96

The following BLAST results are available for this feature:
BLAST of Csa3G128940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L994_CUCSA7.8e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G128940 PE=4 SV=1[more]
BLAST of Csa3G128940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201553|gb|KGN56686.1|1.1e-46100.00hypothetical protein Csa_3G128940 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU101388cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G128940.1Csa3G128940.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU101388CU101388transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G128940CSPI03G10350Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G128940Melon (DHL92) v3.6.1cumedB223
Csa3G128940Silver-seed gourdcarcuB0257
Csa3G128940Silver-seed gourdcarcuB0644
Csa3G128940Silver-seed gourdcarcuB0975
Csa3G128940Silver-seed gourdcarcuB1093
Csa3G128940Watermelon (97103) v2cuwmbB204
Csa3G128940Watermelon (97103) v2cuwmbB185
Csa3G128940Watermelon (97103) v2cuwmbB231
Csa3G128940Wax gourdcuwgoB270
Csa3G128940Cucumber (Chinese Long) v2cucuB088
Csa3G128940Cucumber (Chinese Long) v2cucuB089
Csa3G128940Cucumber (Gy14) v1cgycuB366
Csa3G128940Cucumber (Gy14) v1cgycuB460
Csa3G128940Cucurbita maxima (Rimu)cmacuB253
Csa3G128940Cucurbita maxima (Rimu)cmacuB357
Csa3G128940Cucurbita maxima (Rimu)cmacuB814
Csa3G128940Cucurbita moschata (Rifu)cmocuB239
Csa3G128940Cucurbita moschata (Rifu)cmocuB348
Csa3G128940Cucurbita moschata (Rifu)cmocuB806
Csa3G128940Melon (DHL92) v3.5.1cumeB236
Csa3G128940Watermelon (Charleston Gray)cuwcgB181
Csa3G128940Watermelon (Charleston Gray)cuwcgB222
Csa3G128940Watermelon (97103) v1cuwmB187
Csa3G128940Watermelon (97103) v1cuwmB207
Csa3G128940Watermelon (97103) v1cuwmB233
Csa3G128940Cucurbita pepo (Zucchini)cpecuB135
Csa3G128940Cucurbita pepo (Zucchini)cpecuB609
Csa3G128940Cucurbita pepo (Zucchini)cpecuB859
Csa3G128940Bottle gourd (USVL1VR-Ls)culsiB209
Csa3G128940Bottle gourd (USVL1VR-Ls)culsiB223
Csa3G128940Bottle gourd (USVL1VR-Ls)culsiB232
Csa3G128940Cucumber (Gy14) v2cgybcuB109
Csa3G128940Cucumber (Gy14) v2cgybcuB114
Csa3G128940Cucumber (Gy14) v2cgybcuB116