Csa3G123160 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G123160
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 7384879 .. 7385154 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACACTACAAGAAATCAGTGGTCTTCCGACCCTATCACGCGTCGGCATATATACACAAAGGCGTTAGGGCAAATCCTCCCGACGTACATGGTGTCGTTGAGAAGGAAGTCGGCGTCAGTGCGTCGGGAGAGGGATTCACAACGCGCAATGAAAATGCGTCAAAATGTCATACTCCCGATGCAGTCAATGCCAACAAATGGAGCACGTCGACAATAGGGGACTTTCGATGTTCTATCCCATGTAAAGGAAGGAGTGAGGGAGCAAACAAATAA

mRNA sequence

ATGAAACACTACAAGAAATCAGTGGTCTTCCGACCCTATCACGCGTCGGCATATATACACAAAGGCGTTAGGGCAAATCCTCCCGACGTACATGGTGTCGTTGAGAAGGAAGTCGGCGTCAGTGCGTCGGGAGAGGGATTCACAACGCGCAATGAAAATGCGTCAAAATGTCATACTCCCGATGCAGTCAATGCCAACAAATGGAGCACGTCGACAATAGGGGACTTTCGATGTTCTATCCCATGTAAAGGAAGGAGTGAGGGAGCAAACAAATAA

Coding sequence (CDS)

ATGAAACACTACAAGAAATCAGTGGTCTTCCGACCCTATCACGCGTCGGCATATATACACAAAGGCGTTAGGGCAAATCCTCCCGACGTACATGGTGTCGTTGAGAAGGAAGTCGGCGTCAGTGCGTCGGGAGAGGGATTCACAACGCGCAATGAAAATGCGTCAAAATGTCATACTCCCGATGCAGTCAATGCCAACAAATGGAGCACGTCGACAATAGGGGACTTTCGATGTTCTATCCCATGTAAAGGAAGGAGTGAGGGAGCAAACAAATAA

Protein sequence

MKHYKKSVVFRPYHASAYIHKGVRANPPDVHGVVEKEVGVSASGEGFTTRNENASKCHTPDAVNANKWSTSTIGDFRCSIPCKGRSEGANK*
Homology
[Close]
BLAST of Csa3G123160 vs. TrEMBL
Match: A0A0A0L4A4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G123160 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 3.3e-47
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MKHYKKSVVFRPYHASAYIHKGVRANPPDVHGVVEKEVGVSASGEGFTTRNENASKCHTP 60
          MKHYKKSVVFRPYHASAYIHKGVRANPPDVHGVVEKEVGVSASGEGFTTRNENASKCHTP
Sbjct: 1  MKHYKKSVVFRPYHASAYIHKGVRANPPDVHGVVEKEVGVSASGEGFTTRNENASKCHTP 60

Query: 61 DAVNANKWSTSTIGDFRCSIPCKGRSEGANK 92
          DAVNANKWSTSTIGDFRCSIPCKGRSEGANK
Sbjct: 61 DAVNANKWSTSTIGDFRCSIPCKGRSEGANK 91

[Close]
BLAST of Csa3G123160 vs. NCBI nr
Match: gi|700201410|gb|KGN56543.1| (hypothetical protein Csa_3G123160 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 4.7e-47
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MKHYKKSVVFRPYHASAYIHKGVRANPPDVHGVVEKEVGVSASGEGFTTRNENASKCHTP 60
          MKHYKKSVVFRPYHASAYIHKGVRANPPDVHGVVEKEVGVSASGEGFTTRNENASKCHTP
Sbjct: 1  MKHYKKSVVFRPYHASAYIHKGVRANPPDVHGVVEKEVGVSASGEGFTTRNENASKCHTP 60

Query: 61 DAVNANKWSTSTIGDFRCSIPCKGRSEGANK 92
          DAVNANKWSTSTIGDFRCSIPCKGRSEGANK
Sbjct: 61 DAVNANKWSTSTIGDFRCSIPCKGRSEGANK 91

The following BLAST results are available for this feature:
BLAST of Csa3G123160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4A4_CUCSA3.3e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G123160 PE=4 SV=1[more]
BLAST of Csa3G123160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201410|gb|KGN56543.1|4.7e-47100.00hypothetical protein Csa_3G123160 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G123160.1Csa3G123160.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G123160CSPI03G09050Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G123160Cucurbita moschata (Rifu)cmocuB239
Csa3G123160Cucurbita moschata (Rifu)cmocuB806
Csa3G123160Melon (DHL92) v3.5.1cumeB236
Csa3G123160Melon (DHL92) v3.5.1cumeB254
Csa3G123160Watermelon (Charleston Gray)cuwcgB222
Csa3G123160Watermelon (Charleston Gray)cuwcgB238
Csa3G123160Watermelon (97103) v1cuwmB233
Csa3G123160Watermelon (97103) v1cuwmB252
Csa3G123160Cucurbita pepo (Zucchini)cpecuB609
Csa3G123160Cucurbita pepo (Zucchini)cpecuB859
Csa3G123160Bottle gourd (USVL1VR-Ls)culsiB209
Csa3G123160Cucumber (Gy14) v2cgybcuB109
Csa3G123160Melon (DHL92) v3.6.1cumedB223
Csa3G123160Melon (DHL92) v3.6.1cumedB245
Csa3G123160Silver-seed gourdcarcuB0644
Csa3G123160Silver-seed gourdcarcuB0668
Csa3G123160Watermelon (97103) v2cuwmbB204
Csa3G123160Wax gourdcuwgoB272
Csa3G123160Cucumber (Gy14) v1cgycuB366
Csa3G123160Cucurbita maxima (Rimu)cmacuB253
Csa3G123160Cucurbita maxima (Rimu)cmacuB814