Csa3G122510 (gene) Cucumber (Chinese Long) v2

NameCsa3G122510
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionMYB transcription factor; contains IPR009057 (Homeodomain-like)
LocationChr3 : 7299851 .. 7300593 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTGGAAGAGGGAAGAGGGAAGAGGGAAGAGGGAGTTTTGGAAGACCCACAAGGGAACAGTGGTGAAGGCCTGGTCTTGTCATGGTATGTCCCGTACTCTGTATGTCATTTTCATCATAATAAATGCGTCTCAAATCTCTCTCTGTTCAATAAATGCTCGTCTGCATTGTGAGAATCCGCAATAAATTCTTCTCCTTATTCGCTTATTTCTTATATCAGTTGTGCGTAATTGTAAAACCTCAGAATAAGAAACCTCTGCATTAACTCCCTCAATTTTTTTGGACAAATTTTACTTTCAATGATGATTCAATTCTTACTATGCTCAACCATGTCAGTATTTATTGCAAGAACCAGCTTGAAACTAGCTGATCCTTGTCCTTCCCATTCAGACTCACATAGCCATTAATTTCCCTCTTCTCATTTCAATTCATTGAGATAACCCCTTCACATGGCTTTCCTCATCCATTTGTGAATTCGCTCTAAGAAATTGATGTGCTAAGAAAGGATCTGGATTTTGTTCTTTCACTCTTGGCCACTTGAAGGAGTGTCTCTGCCTCTGGTAGTGAAAGCTGTGAGATGGGGAGGACACCTTGTTGTGATAAGAAGGGGCTAAAGAAAGGGCCGTGGACATCGGAAGAAGATGAACTCCTTATTAACTATATTAGGGAAAACAATGGCCACGGTAGTTGGAGATCTCTCCCCAAGCTTGCAGGTTTAGTGATCCAAAATTTTCGCTAG

mRNA sequence

ATGAGATTGGAAGAGGGAAGAGGGAAGAGGGAAGAGGGAGTTTTGGAAGACCCACAAGGGAACAGTGGTGAAGGCCTGGTCTTGTCATGGAGTGTCTCTGCCTCTGGTAGTGAAAGCTGTGAGATGGGGAGGACACCTTGTTGTGATAAGAAGGGGCTAAAGAAAGGGCCGTGGACATCGGAAGAAGATGAACTCCTTATTAACTATATTAGGGAAAACAATGGCCACGGTAGTTGGAGATCTCTCCCCAAGCTTGCAGGTTTAGTGATCCAAAATTTTCGCTAG

Coding sequence (CDS)

ATGAGATTGGAAGAGGGAAGAGGGAAGAGGGAAGAGGGAGTTTTGGAAGACCCACAAGGGAACAGTGGTGAAGGCCTGGTCTTGTCATGGAGTGTCTCTGCCTCTGGTAGTGAAAGCTGTGAGATGGGGAGGACACCTTGTTGTGATAAGAAGGGGCTAAAGAAAGGGCCGTGGACATCGGAAGAAGATGAACTCCTTATTAACTATATTAGGGAAAACAATGGCCACGGTAGTTGGAGATCTCTCCCCAAGCTTGCAGGTTTAGTGATCCAAAATTTTCGCTAG

Protein sequence

MRLEEGRGKREEGVLEDPQGNSGEGLVLSWSVSASGSESCEMGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGLVIQNFR*
BLAST of Csa3G122510 vs. Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-13
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGLV 90
          MGRTPCC+K GLK+G WT+EED+LL NYI E +G GSWRSLPK AGL+
Sbjct: 1  MGRTPCCEKVGLKRGRWTAEEDQLLANYIAE-HGEGSWRSLPKNAGLL 47

BLAST of Csa3G122510 vs. Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-13
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGLV 90
          MGR PCC+K GLKKGPWT EED++L+ +I + +GHG+WR+LPK AGL+
Sbjct: 1  MGRAPCCEKMGLKKGPWTPEEDKVLVAHI-QRHGHGNWRALPKQAGLL 47

BLAST of Csa3G122510 vs. Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.9e-13
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGL 89
          MGR PCC+K G+K+G WT+EED++L NYI ++NG GSWRSLPK AGL
Sbjct: 1  MGRAPCCEKVGIKRGRWTAEEDQILSNYI-QSNGEGSWRSLPKNAGL 46

BLAST of Csa3G122510 vs. Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-12
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 1

Query: 42 MGRTPCCDK-KGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGL 89
          MGR+PCCD+ KG+KKGPW  EED+ L  YI EN G+G+WRSLPKLAGL
Sbjct: 1  MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINEN-GYGNWRSLPKLAGL 47

BLAST of Csa3G122510 vs. Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-12
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGLV 90
          MGR PCC+K GL++GPWTSEED+ L+++I  NNG   WR++PKLAGL+
Sbjct: 1  MGRKPCCEKVGLRRGPWTSEEDQKLVSHI-TNNGLSCWRAIPKLAGLL 47

BLAST of Csa3G122510 vs. TrEMBL
Match: A0A0A0L7H5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122510 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-48
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1

Query: 1  MRLEEGRGKREEGVLEDPQGNSGEGLVLSWSVSASGSESCEMGRTPCCDKKGLKKGPWTS 60
          MRLEEGRGKREEGVLEDPQGNSGEGLVLSWSVSASGSESCEMGRTPCCDKKGLKKGPWTS
Sbjct: 1  MRLEEGRGKREEGVLEDPQGNSGEGLVLSWSVSASGSESCEMGRTPCCDKKGLKKGPWTS 60

Query: 61 EEDELLINYIRENNGHGSWRSLPKLAGLVIQNFR 95
          EEDELLINYIRENNGHGSWRSLPKLAGLVIQNFR
Sbjct: 61 EEDELLINYIRENNGHGSWRSLPKLAGLVIQNFR 94

BLAST of Csa3G122510 vs. TrEMBL
Match: W9S0V5_9ROSA (Protein ODORANT1 OS=Morus notabilis GN=L484_017314 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 41/48 (85.42%), Postives = 47/48 (97.92%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGLV 90
          MGRTPCCDK+GLKKGPWT+EEDE+L+NYI+ NNGHGSWRSLPKLAGL+
Sbjct: 1  MGRTPCCDKRGLKKGPWTAEEDEILVNYIKNNNGHGSWRSLPKLAGLL 48

BLAST of Csa3G122510 vs. TrEMBL
Match: A0A151S3U7_CAJCA (Myb-related protein Pp2 OS=Cajanus cajan GN=KK1_028866 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-17
Identity = 39/48 (81.25%), Postives = 46/48 (95.83%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGLV 90
          MGRTPCC+K GLKKGPWT+EEDE+L+NYI++N GHGSWRSLPKLAGL+
Sbjct: 1  MGRTPCCEKMGLKKGPWTAEEDEILVNYIKKNGGHGSWRSLPKLAGLL 48

BLAST of Csa3G122510 vs. TrEMBL
Match: G7L3J2_MEDTR (Myb transcription factor MIXTA-like protein OS=Medicago truncatula GN=MTR_7g076740 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-17
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGLV 90
          MGRTPCCDKKGLKKGPWT+EEDE+L NYI++N GHGSWRSLPK+ GL+
Sbjct: 1  MGRTPCCDKKGLKKGPWTAEEDEILANYIKKNGGHGSWRSLPKITGLL 48

BLAST of Csa3G122510 vs. TrEMBL
Match: A0A0L9U309_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g053700 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.2e-17
Identity = 38/48 (79.17%), Postives = 46/48 (95.83%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGLV 90
          MGRTPCCDKKGLKKGPWT+EEDE+L +YI++N GHGSWRSLP++AGL+
Sbjct: 1  MGRTPCCDKKGLKKGPWTAEEDEILASYIKKNGGHGSWRSLPRMAGLL 48

BLAST of Csa3G122510 vs. TAIR10
Match: AT3G61250.1 (AT3G61250.1 myb domain protein 17)

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-17
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGLV 90
          MGRTPCCDK GLKKGPWT EEDE+L+ +I++ NGHGSWR+LPKLAGL+
Sbjct: 1  MGRTPCCDKIGLKKGPWTPEEDEVLVAHIKK-NGHGSWRTLPKLAGLL 47

BLAST of Csa3G122510 vs. TAIR10
Match: AT3G02940.1 (AT3G02940.1 myb domain protein 107)

HSP 1 Score: 80.5 bits (197), Expect = 6.2e-16
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGL 89
          MGR+PCCD+ GLKKGPWT EED+ LIN+IR+ +GHGSWR+LPK AGL
Sbjct: 1  MGRSPCCDESGLKKGPWTPEEDQKLINHIRK-HGHGSWRALPKQAGL 46

BLAST of Csa3G122510 vs. TAIR10
Match: AT5G15310.1 (AT5G15310.1 myb domain protein 16)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-15
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGL 89
          MGR+PCCDK GLKKGPWT EED+ L+ YI E +GHGSWRSLP+ AGL
Sbjct: 1  MGRSPCCDKLGLKKGPWTPEEDQKLLAYI-EEHGHGSWRSLPEKAGL 46

BLAST of Csa3G122510 vs. TAIR10
Match: AT1G34670.1 (AT1G34670.1 myb domain protein 93)

HSP 1 Score: 78.2 bits (191), Expect = 3.1e-15
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGL 89
          MGR+PCCD+ GLKKGPWT EED+ LI+YI + +GHGSWR+LPKLA L
Sbjct: 1  MGRSPCCDENGLKKGPWTPEEDQKLIDYIHK-HGHGSWRALPKLADL 46

BLAST of Csa3G122510 vs. TAIR10
Match: AT5G16770.1 (AT5G16770.1 myb domain protein 9)

HSP 1 Score: 77.4 bits (189), Expect = 5.3e-15
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGL 89
          MGR+PCCD+ GLKKGPWT EED+ LI++I + +GHGSWR+LPK AGL
Sbjct: 1  MGRSPCCDENGLKKGPWTQEEDDKLIDHI-QKHGHGSWRALPKQAGL 46

BLAST of Csa3G122510 vs. NCBI nr
Match: gi|700201394|gb|KGN56527.1| (hypothetical protein Csa_3G122510 [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 2.6e-48
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1

Query: 1  MRLEEGRGKREEGVLEDPQGNSGEGLVLSWSVSASGSESCEMGRTPCCDKKGLKKGPWTS 60
          MRLEEGRGKREEGVLEDPQGNSGEGLVLSWSVSASGSESCEMGRTPCCDKKGLKKGPWTS
Sbjct: 1  MRLEEGRGKREEGVLEDPQGNSGEGLVLSWSVSASGSESCEMGRTPCCDKKGLKKGPWTS 60

Query: 61 EEDELLINYIRENNGHGSWRSLPKLAGLVIQNFR 95
          EEDELLINYIRENNGHGSWRSLPKLAGLVIQNFR
Sbjct: 61 EEDELLINYIRENNGHGSWRSLPKLAGLVIQNFR 94

BLAST of Csa3G122510 vs. NCBI nr
Match: gi|449432165|ref|XP_004133870.1| (PREDICTED: transcription repressor MYB6 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGLV 90
          MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGL+
Sbjct: 1  MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGLL 48

BLAST of Csa3G122510 vs. NCBI nr
Match: gi|1009142262|ref|XP_015888628.1| (PREDICTED: transcription factor MYB34 [Ziziphus jujuba])

HSP 1 Score: 102.8 bits (255), Expect = 3.3e-19
Identity = 43/48 (89.58%), Postives = 48/48 (100.00%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGLV 90
          MGRTPCCDKKGLKKGPWT+EEDELL+NYI++NNGHGSWRSLPKLAGL+
Sbjct: 1  MGRTPCCDKKGLKKGPWTAEEDELLVNYIKKNNGHGSWRSLPKLAGLL 48

BLAST of Csa3G122510 vs. NCBI nr
Match: gi|703135720|ref|XP_010105966.1| (Protein ODORANT1 [Morus notabilis])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 41/48 (85.42%), Postives = 47/48 (97.92%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGLV 90
          MGRTPCCDK+GLKKGPWT+EEDE+L+NYI+ NNGHGSWRSLPKLAGL+
Sbjct: 1  MGRTPCCDKRGLKKGPWTAEEDEILVNYIKNNNGHGSWRSLPKLAGLL 48

BLAST of Csa3G122510 vs. NCBI nr
Match: gi|502157248|ref|XP_004510807.1| (PREDICTED: transcription repressor MYB5-like [Cicer arietinum])

HSP 1 Score: 96.3 bits (238), Expect = 3.1e-17
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 1

Query: 42 MGRTPCCDKKGLKKGPWTSEEDELLINYIRENNGHGSWRSLPKLAGLV 90
          MGRTPCCDK GLKKGPWTSEEDE+L+N+I++N GHGSWRSLPKLAGL+
Sbjct: 1  MGRTPCCDKLGLKKGPWTSEEDEVLVNFIKKNGGHGSWRSLPKLAGLL 48

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MYBP_MAIZE1.2e-1372.92Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB4_ORYSJ6.0e-1364.58Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2[more]
MYB12_ARATH7.9e-1368.09Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1[more]
MYB39_ARATH2.3e-1270.83Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1[more]
MYB2_PHYPA6.7e-1262.50Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L7H5_CUCSA1.8e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122510 PE=4 SV=1[more]
W9S0V5_9ROSA1.1e-1885.42Protein ODORANT1 OS=Morus notabilis GN=L484_017314 PE=4 SV=1[more]
A0A151S3U7_CAJCA2.8e-1781.25Myb-related protein Pp2 OS=Cajanus cajan GN=KK1_028866 PE=4 SV=1[more]
G7L3J2_MEDTR2.8e-1781.25Myb transcription factor MIXTA-like protein OS=Medicago truncatula GN=MTR_7g0767... [more]
A0A0L9U309_PHAAN8.2e-1779.17Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g053700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G61250.13.3e-1777.08 myb domain protein 17[more]
AT3G02940.16.2e-1674.47 myb domain protein 107[more]
AT5G15310.12.4e-1574.47 myb domain protein 16[more]
AT1G34670.13.1e-1572.34 myb domain protein 93[more]
AT5G16770.15.3e-1570.21 myb domain protein 9[more]
Match NameE-valueIdentityDescription
gi|700201394|gb|KGN56527.1|2.6e-48100.00hypothetical protein Csa_3G122510 [Cucumis sativus][more]
gi|449432165|ref|XP_004133870.1|1.8e-2097.92PREDICTED: transcription repressor MYB6 [Cucumis sativus][more]
gi|1009142262|ref|XP_015888628.1|3.3e-1989.58PREDICTED: transcription factor MYB34 [Ziziphus jujuba][more]
gi|703135720|ref|XP_010105966.1|1.6e-1885.42Protein ODORANT1 [Morus notabilis][more]
gi|502157248|ref|XP_004510807.1|3.1e-1783.33PREDICTED: transcription repressor MYB5-like [Cicer arietinum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf
IPR017930Myb_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009909 regulation of flower development
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G122510.1Csa3G122510.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 55..87
score: 3.
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 46..85
score: 2.4
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 49..87
score: 1.4
IPR017930Myb domainPROFILEPS51294HTH_MYBcoord: 50..94
score: 10
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 26..89
score: 1.6
NoneNo IPR availablePANTHERPTHR10641:SF622SUBFAMILY NOT NAMEDcoord: 26..89
score: 1.6