Csa3G122470 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G122470
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 7285543 .. 7286992 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTAGGGTTTAAGAAGACGACGTTGGGATATCCAAATTTCTGGCGGCAGACCAACAATATGTCGAAGAAGAACAGTCTTTCGCGCAGGAAGAAACAATATGAATTCGACCTTCAAAGTAACTTCTAATCATGGATTAATTTTTCGAATAATTTGTTTGGTTGTTCGTTCATTCGTTCGTTCCAGTTGATTCACTATTTTCGTGGTTCTTATGTAATGTTCTTACCAGGGGAGAAACAAGAAAAGGAAAAGGCTGCTAAGAAGCTTCAAGCAAAGAAGAATAGTATGAAAGTAAATCTCTCTCTTTCACTCTACTGAATCCAGAAAAGTAGAATTTTCTGCTTCGTTTATAGAAAAACGTTTAATTATTAGGGGTAGAAAAGTAGGACGATTTAGGAATTTCATCGTATGAGTAATTTTCTAGTTTTTACATACTCCAGTGGGATTGTGAAGTTCAATGACTTTCTACTGCTTAATTTCTTGGGTGATTTGGCAATTTTCGATGGAGTTGAAACAAGTTCTGTTTGTTTGTGTGCTTGTTCTTTTGATATCATTCAAAAGTCTCATGATTTTCGTATAACTTTGTTCATAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAACAGCAAAAGCAAAAGCTTCTCAAGCTATGGAGCTTGATAAATGAGGTTTGATATGTATATTTTTTGGCCCTGTATTGATGAATTGACATATTGATTTAGTTTTACAAAGAAAAATCTTCCATTCGTAGTAAGCTTTGATCTCTAATGTCTTGAGTACTGATTCGAATCTGATTTATAAGAAATTCTTAATCATTACCTAATACTAAATGCAAATTCAAAGAAAATGTTCCATCATTTGAACTCGGAAATTGCTCTGTCAAGAATATCTCTTTCTTTTTCTTACTTTCTTAGGTGTTCAAACAAAAAGTAATCCCCATCATCTCAATCTTGAATCATATTACTAGCTGTATCGGATAATTTCATGTCCCCTTCATGAGTGTCTCCTAATGTGAATGTCTATAGAAACTCGAATTATAACGTATTTGGTCGTCTAATTTGAACTGGAAATCGGGTTGTGTCGTTTGATTCCATAAACGGTTTTTGTTATCATGTCTTTAGGTTGGCAATGGGTGCAGAGGCTGAATCTTCAGGGTACCATTAGCCCTTCGTTTTGGAGAAAATCTGGTGAAATGCATTGGCATTATTTGAACTCAAGTAGTTTATCATTGAAGATCCAATTCGTCTCATTCTTTTAGATCTCAGTCCCTTTCTTGTAATCTAATTCGAGTAGTACTCATTTGATATTTTTCCTTCTGTTTAGCATGTCCTTGTACATTATTTCATACTTTTCAATGAAAGCTCCACTTTTTTGTCAAGAAAACATATGGCTTATGGGTT

mRNA sequence

ATGTCGAAGAAGAACAGTCTTTCGCGCAGGAAGAAACAATATGAATTCGACCTTCAAAGGGAGAAACAAGAAAAGGAAAAGGCTGCTAAGAAGCTTCAAGCAAAGAAGAATAGTATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAACAGCAAAAGCAAAAGCTTCTCAAGCTATGGAGCTTGATAAATGA

Coding sequence (CDS)

ATGTCGAAGAAGAACAGTCTTTCGCGCAGGAAGAAACAATATGAATTCGACCTTCAAAGGGAGAAACAAGAAAAGGAAAAGGCTGCTAAGAAGCTTCAAGCAAAGAAGAATAGTATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAACAGCAAAAGCAAAAGCTTCTCAAGCTATGGAGCTTGATAAATGA

Protein sequence

MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKKVKTKLTATAKAKASQAMELDK*

Homology

[Close]

BLAST of Csa3G122470 vs. TrEMBL
Match: A0A0A0L493_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122470 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.0e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTATAKAKASQAMELDK 82
          VKTKLTATAKAKASQAMELDK
Sbjct: 61 VKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of Csa3G122470 vs. TrEMBL
Match: A0A059CHY1_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_D02281 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 8.6e-31
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1   MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
           MSKKNSLSRRKKQYEFDL+REK EKEK  KKLQ KKN MKVDGSGKKKKG GGFQVGK+K
Sbjct: 42  MSKKNSLSRRKKQYEFDLRREKAEKEKKEKKLQTKKNKMKVDGSGKKKKGAGGFQVGKRK 101

Query: 61  VKTKLTATAKAKASQAMELDK 82
           VKTKLTA AKAKA+QAMELDK
Sbjct: 102 VKTKLTALAKAKAAQAMELDK 122

[Close]

BLAST of Csa3G122470 vs. TrEMBL
Match: I1JK99_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G011100 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.1e-29
Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+L++RKKQYEFDLQREKQEK K  +KL AKKN MKVDGSGKKKKGG GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSGKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTATAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of Csa3G122470 vs. TrEMBL
Match: I1KIC3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G072200 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-28
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+L++RKKQYEFDLQREKQEK K  +KL AKKN MKVDGS KKKKGG GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSDKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTATAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of Csa3G122470 vs. TrEMBL
Match: A0A0B2QZ50_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_031058 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-28
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+L++RKKQYEFDLQREKQEK K  +KL AKKN MKVDGS KKKKGG GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSDKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTATAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of Csa3G122470 vs. TAIR10
Match: AT2G45860.1 (AT2G45860.1 unknown protein)

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-26
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+L++RKKQ+E++LQ+EK+ ++K  KKL A KN MKVDGSGKKKK  GGF VGKKK
Sbjct: 1  MSKKNNLAKRKKQHEYNLQKEKELQDKKIKKLHANKNKMKVDGSGKKKK--GGFSVGKKK 60

Query: 61 VKTKLTATAKAKASQAMELD 81
          +KTKLT TAKAKA+QAMELD
Sbjct: 61 LKTKLTPTAKAKAAQAMELD 78

[Close]

BLAST of Csa3G122470 vs. NCBI nr
Match: gi|700201390|gb|KGN56523.1| (hypothetical protein Csa_3G122470 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 5.7e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTATAKAKASQAMELDK 82
          VKTKLTATAKAKASQAMELDK
Sbjct: 61 VKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of Csa3G122470 vs. NCBI nr
Match: gi|629113098|gb|KCW78058.1| (hypothetical protein EUGRSUZ_D02281, partial [Eucalyptus grandis])

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-30
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1   MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
           MSKKNSLSRRKKQYEFDL+REK EKEK  KKLQ KKN MKVDGSGKKKKG GGFQVGK+K
Sbjct: 42  MSKKNSLSRRKKQYEFDLRREKAEKEKKEKKLQTKKNKMKVDGSGKKKKGAGGFQVGKRK 101

Query: 61  VKTKLTATAKAKASQAMELDK 82
           VKTKLTA AKAKA+QAMELDK
Sbjct: 102 VKTKLTALAKAKAAQAMELDK 122

[Close]

BLAST of Csa3G122470 vs. NCBI nr
Match: gi|702326796|ref|XP_010053693.1| (PREDICTED: uncharacterized protein LOC104442091 [Eucalyptus grandis])

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-30
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNSLSRRKKQYEFDL+REK EKEK  KKLQ KKN MKVDGSGKKKKG GGFQVGK+K
Sbjct: 1  MSKKNSLSRRKKQYEFDLRREKAEKEKKEKKLQTKKNKMKVDGSGKKKKGAGGFQVGKRK 60

Query: 61 VKTKLTATAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of Csa3G122470 vs. NCBI nr
Match: gi|571443846|ref|XP_006576335.1| (PREDICTED: uncharacterized protein LOC100782399 [Glycine max])

HSP 1 Score: 136.0 bits (341), Expect = 3.0e-29
Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+L++RKKQYEFDLQREKQEK K  +KL AKKN MKVDGSGKKKKGG GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSGKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTATAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of Csa3G122470 vs. NCBI nr
Match: gi|955328203|ref|XP_014632806.1| (PREDICTED: uncharacterized protein LOC100500376 isoform X1 [Glycine max])

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-28
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+L++RKKQYEFDLQREKQEK K  +KL AKKN MKVDGS KKKKGG GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSDKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTATAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

The following BLAST results are available for this feature:

BLAST of Csa3G122470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L493_CUCSA	4.0e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122470 PE=4 SV=1	[more]
A0A059CHY1_EUCGR	8.6e-31	87.65	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_D02281 PE=4 ...	[more]
I1JK99_SOYBN	2.1e-29	83.95	Uncharacterized protein OS=Glycine max GN=GLYMA_03G011100 PE=4 SV=1	[more]
I1KIC3_SOYBN	1.4e-28	82.72	Uncharacterized protein OS=Glycine max GN=GLYMA_07G072200 PE=4 SV=1	[more]
A0A0B2QZ50_GLYSO	1.4e-28	82.72	Uncharacterized protein OS=Glycine soja GN=glysoja_031058 PE=4 SV=1	[more]

BLAST of Csa3G122470 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45860.1	2.6e-26	72.50	unknown protein	[more]

BLAST of Csa3G122470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201390\|gb\|KGN56523.1\|	5.7e-36	100.00	hypothetical protein Csa_3G122470 [Cucumis sativus]	[more]
gi\|629113098\|gb\|KCW78058.1\|	1.2e-30	87.65	hypothetical protein EUGRSUZ_D02281, partial [Eucalyptus grandis]	[more]
gi\|702326796\|ref\|XP_010053693.1\|	1.2e-30	87.65	PREDICTED: uncharacterized protein LOC104442091 [Eucalyptus grandis]	[more]
gi\|571443846\|ref\|XP_006576335.1\|	3.0e-29	83.95	PREDICTED: uncharacterized protein LOC100782399 [Glycine max]	[more]
gi\|955328203\|ref\|XP_014632806.1\|	2.0e-28	82.72	PREDICTED: uncharacterized protein LOC100500376 isoform X1 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU104229	cucumber EST collection version 3.0	transcribed_cluster
CU108409	cucumber EST collection version 3.0	transcribed_cluster
CU134244	cucumber EST collection version 3.0	transcribed_cluster
CU139921	cucumber EST collection version 3.0	transcribed_cluster
CU151132	cucumber EST collection version 3.0	transcribed_cluster
CU153693	cucumber EST collection version 3.0	transcribed_cluster
CU164069	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU164069	CU164069	transcribed_cluster
CU104229	CU104229	transcribed_cluster
CU108409	CU108409	transcribed_cluster
CU151132	CU151132	transcribed_cluster
CU134244	CU134244	transcribed_cluster
CU153693	CU153693	transcribed_cluster
CU139921	CU139921	transcribed_cluster

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G122470.1	Csa3G122470.1	mRNA
Csa3G122470.2	Csa3G122470.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 7..27 scor
None	No IPR available	PANTHER	PTHR36745	FAMILY NOT NAMED	coord: 6..66 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G122470	Melon (DHL92) v3.5.1	cumeB236
Csa3G122470	Melon (DHL92) v3.5.1	cumeB254
Csa3G122470	Watermelon (Charleston Gray)	cuwcgB222
Csa3G122470	Watermelon (Charleston Gray)	cuwcgB238
Csa3G122470	Watermelon (97103) v1	cuwmB233
Csa3G122470	Watermelon (97103) v1	cuwmB252
Csa3G122470	Cucurbita pepo (Zucchini)	cpecuB038
Csa3G122470	Cucurbita pepo (Zucchini)	cpecuB609
Csa3G122470	Cucurbita pepo (Zucchini)	cpecuB852
Csa3G122470	Bottle gourd (USVL1VR-Ls)	culsiB209
Csa3G122470	Cucumber (Gy14) v2	cgybcuB109
Csa3G122470	Melon (DHL92) v3.6.1	cumedB223
Csa3G122470	Melon (DHL92) v3.6.1	cumedB245
Csa3G122470	Silver-seed gourd	carcuB0414
Csa3G122470	Silver-seed gourd	carcuB0522
Csa3G122470	Watermelon (97103) v2	cuwmbB204
Csa3G122470	Wax gourd	cuwgoB272
Csa3G122470	Cucumber (Gy14) v1	cgycuB366
Csa3G122470	Cucumber (Gy14) v1	cgycuB431
Csa3G122470	Cucurbita maxima (Rimu)	cmacuB253
Csa3G122470	Cucurbita maxima (Rimu)	cmacuB814
Csa3G122470	Cucurbita maxima (Rimu)	cmacuB828
Csa3G122470	Cucurbita moschata (Rifu)	cmocuB239
Csa3G122470	Cucurbita moschata (Rifu)	cmocuB806
Csa3G122470	Cucurbita moschata (Rifu)	cmocuB818