Csa3G121670 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G121670
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 7106821 .. 7107095 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAATGGAAAGAAAAAAAGACTACAGATTATCGGGCTATTGTAACAACTAACTAGTGATTAAATCTAGTTTTACTGTTTGTCCAATTTCTCAAACAAAAGTCAGTTTTCTTTAGGTATTTTCTATTCAGAGCAAGGCCTATGGTTTGTTCAATGGCCAAGGGGATACTGTTCGTATGCAGCATTCGGTGCTAGAACTCTATTCAGAACTGCGAAATTGCCGGTTGGCGTTCAGAGCTAATGGAAGTAATCTAATAAACAAAACTCTATAA

mRNA sequence

ATGGCGGAATGGAAAGAAAAAAAGACTACAGATTATCGGGCTATTAGCAAGGCCTATGGTTTGTTCAATGGCCAAGGGGATACTGTTCGTATGCAGCATTCGGTGCTAGAACTCTATTCAGAACTGCGAAATTGCCGGTTGGCGTTCAGAGCTAATGGAAGTAATCTAATAAACAAAACTCTATAA

Coding sequence (CDS)

ATGGCGGAATGGAAAGAAAAAAAGACTACAGATTATCGGGCTATTAGCAAGGCCTATGGTTTGTTCAATGGCCAAGGGGATACTGTTCGTATGCAGCATTCGGTGCTAGAACTCTATTCAGAACTGCGAAATTGCCGGTTGGCGTTCAGAGCTAATGGAAGTAATCTAATAAACAAAACTCTATAA

Protein sequence

MAEWKEKKTTDYRAISKAYGLFNGQGDTVRMQHSVLELYSELRNCRLAFRANGSNLINKTL*
Homology
[Close]
BLAST of Csa3G121670 vs. TrEMBL
Match: A0A0A0L8U4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121670 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 9.7e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MAEWKEKKTTDYRAISKAYGLFNGQGDTVRMQHSVLELYSELRNCRLAFRANGSNLINKT 60
          MAEWKEKKTTDYRAISKAYGLFNGQGDTVRMQHSVLELYSELRNCRLAFRANGSNLINKT
Sbjct: 1  MAEWKEKKTTDYRAISKAYGLFNGQGDTVRMQHSVLELYSELRNCRLAFRANGSNLINKT 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]
BLAST of Csa3G121670 vs. NCBI nr
Match: gi|700201358|gb|KGN56491.1| (hypothetical protein Csa_3G121670 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MAEWKEKKTTDYRAISKAYGLFNGQGDTVRMQHSVLELYSELRNCRLAFRANGSNLINKT 60
          MAEWKEKKTTDYRAISKAYGLFNGQGDTVRMQHSVLELYSELRNCRLAFRANGSNLINKT
Sbjct: 1  MAEWKEKKTTDYRAISKAYGLFNGQGDTVRMQHSVLELYSELRNCRLAFRANGSNLINKT 60

Query: 61 L 62
          L
Sbjct: 61 L 61

The following BLAST results are available for this feature:
BLAST of Csa3G121670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8U4_CUCSA9.7e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121670 PE=4 SV=1[more]
BLAST of Csa3G121670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201358|gb|KGN56491.1|1.4e-26100.00hypothetical protein Csa_3G121670 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU097482cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G121670.1Csa3G121670.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU097482CU097482transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G121670Wax gourdcuwgoB295
Csa3G121670Cucumber (Chinese Long) v2cucuB093
Csa3G121670Cucumber (Chinese Long) v2cucuB095
Csa3G121670Cucumber (Chinese Long) v2cucuB097
Csa3G121670Cucumber (Gy14) v1cgycuB128
Csa3G121670Cucumber (Gy14) v1cgycuB191
Csa3G121670Cucumber (Gy14) v1cgycuB366
Csa3G121670Cucumber (Gy14) v1cgycuB431
Csa3G121670Cucurbita maxima (Rimu)cmacuB253
Csa3G121670Cucurbita maxima (Rimu)cmacuB288
Csa3G121670Cucurbita maxima (Rimu)cmacuB599
Csa3G121670Cucurbita maxima (Rimu)cmacuB828
Csa3G121670Cucurbita moschata (Rifu)cmocuB239
Csa3G121670Cucurbita moschata (Rifu)cmocuB271
Csa3G121670Cucurbita moschata (Rifu)cmocuB275
Csa3G121670Cucurbita moschata (Rifu)cmocuB806
Csa3G121670Cucurbita moschata (Rifu)cmocuB818
Csa3G121670Melon (DHL92) v3.5.1cumeB175
Csa3G121670Melon (DHL92) v3.5.1cumeB176
Csa3G121670Melon (DHL92) v3.5.1cumeB183
Csa3G121670Melon (DHL92) v3.5.1cumeB236
Csa3G121670Melon (DHL92) v3.5.1cumeB254
Csa3G121670Melon (DHL92) v3.5.1cumeB257
Csa3G121670Watermelon (Charleston Gray)cuwcgB206
Csa3G121670Watermelon (Charleston Gray)cuwcgB204
Csa3G121670Watermelon (Charleston Gray)cuwcgB222
Csa3G121670Watermelon (Charleston Gray)cuwcgB238
Csa3G121670Watermelon (Charleston Gray)cuwcgB243
Csa3G121670Watermelon (97103) v1cuwmB233
Csa3G121670Watermelon (97103) v1cuwmB258
Csa3G121670Watermelon (97103) v1cuwmB252
Csa3G121670Watermelon (97103) v1cuwmB260
Csa3G121670Cucurbita pepo (Zucchini)cpecuB038
Csa3G121670Cucurbita pepo (Zucchini)cpecuB168
Csa3G121670Cucurbita pepo (Zucchini)cpecuB609
Csa3G121670Cucurbita pepo (Zucchini)cpecuB852
Csa3G121670Bottle gourd (USVL1VR-Ls)culsiB151
Csa3G121670Bottle gourd (USVL1VR-Ls)culsiB153
Csa3G121670Bottle gourd (USVL1VR-Ls)culsiB158
Csa3G121670Bottle gourd (USVL1VR-Ls)culsiB209
Csa3G121670Cucumber (Gy14) v2cgybcuB109
Csa3G121670Cucumber (Gy14) v2cgybcuB163
Csa3G121670Cucumber (Gy14) v2cgybcuB206
Csa3G121670Cucumber (Gy14) v2cgybcuB210
Csa3G121670Cucumber (Gy14) v2cgybcuB267
Csa3G121670Melon (DHL92) v3.6.1cumedB157
Csa3G121670Melon (DHL92) v3.6.1cumedB158
Csa3G121670Melon (DHL92) v3.6.1cumedB169
Csa3G121670Melon (DHL92) v3.6.1cumedB223
Csa3G121670Melon (DHL92) v3.6.1cumedB245
Csa3G121670Melon (DHL92) v3.6.1cumedB246
Csa3G121670Silver-seed gourdcarcuB0414
Csa3G121670Silver-seed gourdcarcuB0522
Csa3G121670Silver-seed gourdcarcuB0629
Csa3G121670Watermelon (97103) v2cuwmbB204
Csa3G121670Watermelon (97103) v2cuwmbB173
Csa3G121670Watermelon (97103) v2cuwmbB176
Csa3G121670Watermelon (97103) v2cuwmbB229