Csa3G121570 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G121570
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Proline iminopeptidase
Location	Chr3 : 7042599 .. 7043391 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTTGATTTGTTTCGTTTCGTTTCTTGGAGTAGCTCTGTTGTTTGTCGAGTTTATTACGTGGTTGTATCCTTCAAATAGCTCTACCTGTTTGTGGAGAAAATTTGCTGGCGGTGTACTGAAATTTAGCTTAGAGCAGAATTCATCAGCCATCACTATTGGAAGTTTTCGATACAATTTCACTCATATGAACTTCTCAACCTGTGAGTTTTAGTATTAGAGCTTTGAGGGGAATATACATAGCTTTTACACCCAATTTTTTTTTCCCGATAATCAAATGCCTAACTTTTGTTGAGAATTAATGAAAAAGTAGGAAGAGGAACACAAAAAACTTAACTCCAGACAAAAGGAGTCAAAAACTAAAATCGAAAGTGCTTTTACAAATCGAAAGAGCAGTATTATCAATTCCTTTGACTCCGTCGTCCATGTCGCAATTTCAAAGTAGAGAGGATATAGCCCATGCCTGATTTTGCACCTTGGACCATTTTGGGTCAGGTATTTACTTCACTTTTTTCTTTTTGTCGTTTAAGAATTTGGAATCAGCATGCGTTGAACTTGCATGAAGCAATTAGCAGATGTTCTGGCTTTGTGATTTCTGAGAGTGGCTTTGCTTTATAAACGTTATTCGCTTTTGTTGTCTGTAGTAATTGCATCACTATATTGGTTTTTGTTCAGTTACGTATTTGAGTTTTGCTCTACAAGGATTGGAACAAGTCCTCATAACAGGAGGAATTCCTCCAATTGGGAATGGATGCACGTCAGATTCTGTATACAGAGCAGCATGGCTTTGA

mRNA sequence

ATGGTCTTGATTTGTTTCGTTTCGTTTCTTGGAGTAGCTCTGTTGTTTGTCGAGTTTATTACGTGGTTGTATCCTTCAAATAGCTCTACCTGTTTGTGGAGAAAATTTGCTGGCGGTGTACTGAAATTTAGCTTAGAGCAGAATTCATCAGCCATCACTATTGGAAGTTTTCGATACAATTTCACTCATATGAACTTCTCAACCTTTACGTATTTGAGTTTTGCTCTACAAGGATTGGAACAAGTCCTCATAACAGGAGGAATTCCTCCAATTGGGAATGGATGCACGTCAGATTCTGTATACAGAGCAGCATGGCTTTGA

Coding sequence (CDS)

ATGGTCTTGATTTGTTTCGTTTCGTTTCTTGGAGTAGCTCTGTTGTTTGTCGAGTTTATTACGTGGTTGTATCCTTCAAATAGCTCTACCTGTTTGTGGAGAAAATTTGCTGGCGGTGTACTGAAATTTAGCTTAGAGCAGAATTCATCAGCCATCACTATTGGAAGTTTTCGATACAATTTCACTCATATGAACTTCTCAACCTTTACGTATTTGAGTTTTGCTCTACAAGGATTGGAACAAGTCCTCATAACAGGAGGAATTCCTCCAATTGGGAATGGATGCACGTCAGATTCTGTATACAGAGCAGCATGGCTTTGA

Protein sequence

MVLICFVSFLGVALLFVEFITWLYPSNSSTCLWRKFAGGVLKFSLEQNSSAITIGSFRYNFTHMNFSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAWL*

Homology

[Close]

BLAST of Csa3G121570 vs. TrEMBL
Match: A0A0A0L8R9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121570 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.9e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MVLICFVSFLGVALLFVEFITWLYPSNSSTCLWRKFAGGVLKFSLEQNSSAITIGSFRYN 60
           MVLICFVSFLGVALLFVEFITWLYPSNSSTCLWRKFAGGVLKFSLEQNSSAITIGSFRYN
Sbjct: 1   MVLICFVSFLGVALLFVEFITWLYPSNSSTCLWRKFAGGVLKFSLEQNSSAITIGSFRYN 60

Query: 61  FTHMNFSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAWL 107
           FTHMNFSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAWL
Sbjct: 61  FTHMNFSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAWL 106

[Close]

BLAST of Csa3G121570 vs. TrEMBL
Match: B9I8Q4_POPTR (Peptidase family protein OS=Populus trichocarpa GN=POPTR_0014s08630g PE=4 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-09
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1


Query: 66  FSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAW 106
           F + TYLSFA QGL+QVL+TGGIPPIGNGCT+DSVYRA +
Sbjct: 166 FCSVTYLSFAPQGLKQVLLTGGIPPIGNGCTADSVYRACY 205

[Close]

BLAST of Csa3G121570 vs. TrEMBL
Match: A0A0A0L423_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121050 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-09
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 1


Query: 66  FSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAW 106
           F   TYLSFA QGL+QVLITGGIPPIGNGCT+DSVYRA +
Sbjct: 213 FCAVTYLSFAPQGLKQVLITGGIPPIGNGCTADSVYRACF 252

[Close]

BLAST of Csa3G121570 vs. TrEMBL
Match: M5XMD2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004322mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-08
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 1


Query: 66  FSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAW 106
           F   TYLSFA QGL+QVL+TGGIPPIGNGCT+D+VY+A +
Sbjct: 219 FCAVTYLSFAPQGLKQVLLTGGIPPIGNGCTADAVYKACF 258

[Close]

BLAST of Csa3G121570 vs. TrEMBL
Match: A0A0D2TCP9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G103500 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.6e-08
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1


Query: 66  FSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAW 106
           F   TYLSFA QGL+QVL+TGGIPPIG+GCT+DSVYRA +
Sbjct: 219 FCGVTYLSFAPQGLKQVLLTGGIPPIGDGCTADSVYRACF 258

[Close]

BLAST of Csa3G121570 vs. TAIR10
Match: AT3G61540.1 (AT3G61540.1 alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 9.8e-10
Identity = 27/40 (67.50%), Postives = 29/40 (72.50%), Query Frame = 1


Query: 66  FSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAW 106
           F   TYLSFA +GL+QVLITGGIPPIG  CT+D VY A +
Sbjct: 218 FCALTYLSFAPEGLKQVLITGGIPPIGKACTADDVYEAGF 257

[Close]

BLAST of Csa3G121570 vs. NCBI nr
Match: gi|700201348|gb|KGN56481.1| (hypothetical protein Csa_3G121570 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 2.7e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MVLICFVSFLGVALLFVEFITWLYPSNSSTCLWRKFAGGVLKFSLEQNSSAITIGSFRYN 60
           MVLICFVSFLGVALLFVEFITWLYPSNSSTCLWRKFAGGVLKFSLEQNSSAITIGSFRYN
Sbjct: 1   MVLICFVSFLGVALLFVEFITWLYPSNSSTCLWRKFAGGVLKFSLEQNSSAITIGSFRYN 60

Query: 61  FTHMNFSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAWL 107
           FTHMNFSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAWL
Sbjct: 61  FTHMNFSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAWL 106

[Close]

BLAST of Csa3G121570 vs. NCBI nr
Match: gi|700201345|gb|KGN56478.1| (hypothetical protein Csa_3G121050 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 6.0e-09
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 1


Query: 66  FSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAW 106
           F   TYLSFA QGL+QVLITGGIPPIGNGCT+DSVYRA +
Sbjct: 213 FCAVTYLSFAPQGLKQVLITGGIPPIGNGCTADSVYRACF 252

[Close]

BLAST of Csa3G121570 vs. NCBI nr
Match: gi|778677096|ref|XP_004133842.2| (PREDICTED: uncharacterized protein LOC101216845 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 6.0e-09
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 1


Query: 66  FSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAW 106
           F   TYLSFA QGL+QVLITGGIPPIGNGCT+DSVYRA +
Sbjct: 167 FCAVTYLSFAPQGLKQVLITGGIPPIGNGCTADSVYRACF 206

[Close]

BLAST of Csa3G121570 vs. NCBI nr
Match: gi|566203273|ref|XP_002320159.2| (peptidase family protein [Populus trichocarpa])

HSP 1 Score: 68.9 bits (167), Expect = 6.0e-09
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1


Query: 66  FSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAW 106
           F + TYLSFA QGL+QVL+TGGIPPIGNGCT+DSVYRA +
Sbjct: 166 FCSVTYLSFAPQGLKQVLLTGGIPPIGNGCTADSVYRACY 205

[Close]

BLAST of Csa3G121570 vs. NCBI nr
Match: gi|659075131|ref|XP_008437982.1| (PREDICTED: uncharacterized protein LOC103483239 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 6.0e-09
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 1


Query: 66  FSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAW 106
           F   TYLSFA QGL+QVLITGGIPPIGNGCT+DSVYRA +
Sbjct: 213 FCAVTYLSFAPQGLKQVLITGGIPPIGNGCTADSVYRACF 252

The following BLAST results are available for this feature:

BLAST of Csa3G121570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8R9_CUCSA	1.9e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121570 PE=4 SV=1	[more]
B9I8Q4_POPTR	4.2e-09	77.50	Peptidase family protein OS=Populus trichocarpa GN=POPTR_0014s08630g PE=4 SV=2	[more]
A0A0A0L423_CUCSA	4.2e-09	80.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121050 PE=4 SV=1	[more]
M5XMD2_PRUPE	3.5e-08	72.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004322mg PE=4 SV=1	[more]
A0A0D2TCP9_GOSRA	4.6e-08	75.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G103500 PE=4 SV=1	[more]

BLAST of Csa3G121570 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61540.1	9.8e-10	67.50	alpha/beta-Hydrolases superfamily protein	[more]

BLAST of Csa3G121570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201348\|gb\|KGN56481.1\|	2.7e-54	100.00	hypothetical protein Csa_3G121570 [Cucumis sativus]	[more]
gi\|700201345\|gb\|KGN56478.1\|	6.0e-09	80.00	hypothetical protein Csa_3G121050 [Cucumis sativus]	[more]
gi\|778677096\|ref\|XP_004133842.2\|	6.0e-09	80.00	PREDICTED: uncharacterized protein LOC101216845 [Cucumis sativus]	[more]
gi\|566203273\|ref\|XP_002320159.2\|	6.0e-09	77.50	peptidase family protein [Populus trichocarpa]	[more]
gi\|659075131\|ref\|XP_008437982.1\|	6.0e-09	80.00	PREDICTED: uncharacterized protein LOC103483239 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005773	vacuole
molecular_function	GO:0004177	aminopeptidase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU123743	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G121570.1	Csa3G121570.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU123743	CU123743	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10992	ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN	coord: 66..105 score: 5.4
None	No IPR available	PANTHER	PTHR10992:SF749	SUBFAMILY NOT NAMED	coord: 66..105 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G121570	Cucurbita pepo (Zucchini)	cpecuB038
Csa3G121570	Cucurbita pepo (Zucchini)	cpecuB168
Csa3G121570	Cucurbita pepo (Zucchini)	cpecuB609
Csa3G121570	Cucurbita pepo (Zucchini)	cpecuB720
Csa3G121570	Bottle gourd (USVL1VR-Ls)	culsiB151
Csa3G121570	Bottle gourd (USVL1VR-Ls)	culsiB153
Csa3G121570	Bottle gourd (USVL1VR-Ls)	culsiB158
Csa3G121570	Bottle gourd (USVL1VR-Ls)	culsiB209
Csa3G121570	Cucumber (Gy14) v2	cgybcuB109
Csa3G121570	Cucumber (Gy14) v2	cgybcuB163
Csa3G121570	Cucumber (Gy14) v2	cgybcuB206
Csa3G121570	Cucumber (Gy14) v2	cgybcuB210
Csa3G121570	Cucumber (Gy14) v2	cgybcuB267
Csa3G121570	Melon (DHL92) v3.6.1	cumedB157
Csa3G121570	Melon (DHL92) v3.6.1	cumedB158
Csa3G121570	Melon (DHL92) v3.6.1	cumedB169
Csa3G121570	Melon (DHL92) v3.6.1	cumedB223
Csa3G121570	Melon (DHL92) v3.6.1	cumedB245
Csa3G121570	Melon (DHL92) v3.6.1	cumedB246
Csa3G121570	Silver-seed gourd	carcuB0522
Csa3G121570	Silver-seed gourd	carcuB0629
Csa3G121570	Watermelon (97103) v2	cuwmbB204
Csa3G121570	Watermelon (97103) v2	cuwmbB173
Csa3G121570	Watermelon (97103) v2	cuwmbB176
Csa3G121570	Watermelon (97103) v2	cuwmbB224
Csa3G121570	Watermelon (97103) v2	cuwmbB229
Csa3G121570	Cucumber (Chinese Long) v2	cucuB093
Csa3G121570	Cucumber (Chinese Long) v2	cucuB095
Csa3G121570	Cucumber (Chinese Long) v2	cucuB097
Csa3G121570	Cucumber (Gy14) v1	cgycuB128
Csa3G121570	Cucumber (Gy14) v1	cgycuB191
Csa3G121570	Cucumber (Gy14) v1	cgycuB307
Csa3G121570	Cucumber (Gy14) v1	cgycuB366
Csa3G121570	Cucumber (Gy14) v1	cgycuB431
Csa3G121570	Cucurbita maxima (Rimu)	cmacuB253
Csa3G121570	Cucurbita maxima (Rimu)	cmacuB288
Csa3G121570	Cucurbita maxima (Rimu)	cmacuB599
Csa3G121570	Cucurbita moschata (Rifu)	cmocuB239
Csa3G121570	Cucurbita moschata (Rifu)	cmocuB271
Csa3G121570	Cucurbita moschata (Rifu)	cmocuB275
Csa3G121570	Cucurbita moschata (Rifu)	cmocuB593
Csa3G121570	Cucurbita moschata (Rifu)	cmocuB806
Csa3G121570	Melon (DHL92) v3.5.1	cumeB175
Csa3G121570	Melon (DHL92) v3.5.1	cumeB176
Csa3G121570	Melon (DHL92) v3.5.1	cumeB183
Csa3G121570	Melon (DHL92) v3.5.1	cumeB236
Csa3G121570	Melon (DHL92) v3.5.1	cumeB254
Csa3G121570	Melon (DHL92) v3.5.1	cumeB257
Csa3G121570	Watermelon (Charleston Gray)	cuwcgB206
Csa3G121570	Watermelon (Charleston Gray)	cuwcgB204
Csa3G121570	Watermelon (Charleston Gray)	cuwcgB222
Csa3G121570	Watermelon (Charleston Gray)	cuwcgB238
Csa3G121570	Watermelon (Charleston Gray)	cuwcgB243
Csa3G121570	Watermelon (97103) v1	cuwmB233
Csa3G121570	Watermelon (97103) v1	cuwmB258
Csa3G121570	Watermelon (97103) v1	cuwmB252
Csa3G121570	Watermelon (97103) v1	cuwmB260