Csa3G118220 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G118220
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 6567037 .. 6567360 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTGGGAATAGAAATTGAAGATGTGATGAAGGGGGAGGGAGAACAGAAGAAACAGAAGAACAGAAAGCTTAAGGCTGTGTGGGGATGTGTGGTATTAGTTTTGGTGAGTGTGTCAGGGGCGTTTTTAATGGGTTGGTGGGCAGTTCGATTCCATAGATCACAGAAGCAACAGTGGATGGTACCTTTTAGTCTCGTTTTGATGATTGCTCCCATCTTCGTTTTGATCTCTGTTTCCATCTCCAGTTTCTGCAATTCCATGGACAGAATTTCTTCTTTAGTTTCATCCTTGGATCACGATCGCCCACCTGAAATTAGATGA

mRNA sequence

ATGCAGGTGGGAATAGAAATTGAAGATGTGATGAAGGGGGAGGGAGAACAGAAGAAACAGAAGAACAGAAAGCTTAAGGCTGTGTGGGGATGTGTGGTATTAGTTTTGGTGAGTGTGTCAGGGGCGTTTTTAATGGGTTGGTGGGCAGTTCGATTCCATAGATCACAGAAGCAACAGTGGATGGTACCTTTTAGTCTCGTTTTGATGATTGCTCCCATCTTCGTTTTGATCTCTGTTTCCATCTCCAGTTTCTGCAATTCCATGGACAGAATTTCTTCTTTAGTTTCATCCTTGGATCACGATCGCCCACCTGAAATTAGATGA

Coding sequence (CDS)

ATGCAGGTGGGAATAGAAATTGAAGATGTGATGAAGGGGGAGGGAGAACAGAAGAAACAGAAGAACAGAAAGCTTAAGGCTGTGTGGGGATGTGTGGTATTAGTTTTGGTGAGTGTGTCAGGGGCGTTTTTAATGGGTTGGTGGGCAGTTCGATTCCATAGATCACAGAAGCAACAGTGGATGGTACCTTTTAGTCTCGTTTTGATGATTGCTCCCATCTTCGTTTTGATCTCTGTTTCCATCTCCAGTTTCTGCAATTCCATGGACAGAATTTCTTCTTTAGTTTCATCCTTGGATCACGATCGCCCACCTGAAATTAGATGA

Protein sequence

MQVGIEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQWMVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR*

Homology

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BLAST of Csa3G118220 vs. TrEMBL
Match: A0A0A0L8F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118220 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MQVGIEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60
           MQVGIEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW
Sbjct: 1   MQVGIEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60

Query: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 108
           MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR
Sbjct: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 107

[Close]

BLAST of Csa3G118220 vs. TrEMBL
Match: A0A0A0L5S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118200 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.0e-16
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 1


Query: 2   QVGIEIEDVMKGEGEQKKQKN--RKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQ 61
           + G  +E  MK E   KK+    +  K     + +V+  ++G  + GWW  +FH + +Q 
Sbjct: 14  EAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQL 73

Query: 62  WMVPFSLVLMIAPIFVLISVSISSFCNSMDR-ISSLVSSLDH 101
           WMVPFSLVLMIAPIFV++S+ IS+FCNSMD+  +S   S DH
Sbjct: 74  WMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 115

[Close]

BLAST of Csa3G118220 vs. TrEMBL
Match: M5XS79_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017413mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-09
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 15 GEQKKQKN-------RKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQWMVPFSLV 74
          G  K++K+       R +K    C   +LVSV+G  ++GWW  ++H + +Q WMVPF L+
Sbjct: 2  GSNKEEKDASYLEHERVVKTRKACFWSILVSVAGGLMLGWWEYQYHPTNRQLWMVPFGLI 61

Query: 75 LMIAPIFVLISVSISSFCNSMD-----RISSLVSSL 99
          L   P+ V  SV  S  CN  D     R+S L +S+
Sbjct: 62 LFATPVIVWFSVMASDICNLKDDDHVTRVSQLSNSV 97

[Close]

BLAST of Csa3G118220 vs. TrEMBL
Match: N1NKB0_ARADU (Putative permease/transmembrane protein OS=Arachis duranensis GN=ARAX_ADH18B08-009 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-09
Identity = 34/94 (36.17%), Postives = 49/94 (52.13%), Query Frame = 1


Query: 14  EGEQKKQKNRKLKAVWGCVVLVLV-SVSGAFLMGWWAVRFHRSQKQQWMVPFSLVLMIAP 73
           EGE+  +K R  +A     +L LV SV+G F++GWW  ++H   KQ WMVPF  VL + P
Sbjct: 5   EGEENGEKRRIRRAYLVVSLLCLVISVAGGFVLGWWLYKYHPKNKQLWMVPFGFVLFLTP 64

Query: 74  IFVLISVSISSFCNSMDRISSLVSSLDHDRPPEI 107
           I   + + +  FC +        SS  H  P  +
Sbjct: 65  IICCLCLILPDFCTAKTDPVDATSSFHHPVPKRL 98

[Close]

BLAST of Csa3G118220 vs. TrEMBL
Match: A0A0D2PZA1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G151200 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-09
Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 14 EGEQKKQKNRKLKAVW----GCVVLVLVSVSGAFLMGWWAVRFHRSQKQQWMVPFSLVLM 73
          E E+ ++K+ +LK +      C+   LVS+SGA ++GWW   +H +  Q W+VPF L+L 
Sbjct: 5  EEERLERKSEELKKIVDTCIACLWSFLVSLSGALMLGWWGYEYHPTNSQLWLVPFGLILF 64

Query: 74 IAPIFVLISVSISSFCN 87
          + P+ +  ++ +S FCN
Sbjct: 65 VTPLIIWFAIFVSYFCN 81

[Close]

BLAST of Csa3G118220 vs. NCBI nr
Match: gi|700201253|gb|KGN56386.1| (hypothetical protein Csa_3G118220 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 2.3e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MQVGIEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60
           MQVGIEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW
Sbjct: 1   MQVGIEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60

Query: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 108
           MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR
Sbjct: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 107

[Close]

BLAST of Csa3G118220 vs. NCBI nr
Match: gi|700201251|gb|KGN56384.1| (hypothetical protein Csa_3G118200 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 8.7e-16
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 1


Query: 2   QVGIEIEDVMKGEGEQKKQKN--RKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQ 61
           + G  +E  MK E   KK+    +  K     + +V+  ++G  + GWW  +FH + +Q 
Sbjct: 14  EAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQL 73

Query: 62  WMVPFSLVLMIAPIFVLISVSISSFCNSMDR-ISSLVSSLDH 101
           WMVPFSLVLMIAPIFV++S+ IS+FCNSMD+  +S   S DH
Sbjct: 74  WMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 115

[Close]

BLAST of Csa3G118220 vs. NCBI nr
Match: gi|574139383|emb|CCW28738.1| (putative permease/transmembrane protein [Arachis duranensis])

HSP 1 Score: 68.9 bits (167), Expect = 6.0e-09
Identity = 34/94 (36.17%), Postives = 49/94 (52.13%), Query Frame = 1


Query: 14  EGEQKKQKNRKLKAVWGCVVLVLV-SVSGAFLMGWWAVRFHRSQKQQWMVPFSLVLMIAP 73
           EGE+  +K R  +A     +L LV SV+G F++GWW  ++H   KQ WMVPF  VL + P
Sbjct: 5   EGEENGEKRRIRRAYLVVSLLCLVISVAGGFVLGWWLYKYHPKNKQLWMVPFGFVLFLTP 64

Query: 74  IFVLISVSISSFCNSMDRISSLVSSLDHDRPPEI 107
           I   + + +  FC +        SS  H  P  +
Sbjct: 65  IICCLCLILPDFCTAKTDPVDATSSFHHPVPKRL 98

[Close]

BLAST of Csa3G118220 vs. NCBI nr
Match: gi|596052374|ref|XP_007220681.1| (hypothetical protein PRUPE_ppa017413mg [Prunus persica])

HSP 1 Score: 68.9 bits (167), Expect = 6.0e-09
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 15 GEQKKQKN-------RKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQWMVPFSLV 74
          G  K++K+       R +K    C   +LVSV+G  ++GWW  ++H + +Q WMVPF L+
Sbjct: 2  GSNKEEKDASYLEHERVVKTRKACFWSILVSVAGGLMLGWWEYQYHPTNRQLWMVPFGLI 61

Query: 75 LMIAPIFVLISVSISSFCNSMD-----RISSLVSSL 99
          L   P+ V  SV  S  CN  D     R+S L +S+
Sbjct: 62 LFATPVIVWFSVMASDICNLKDDDHVTRVSQLSNSV 97

[Close]

BLAST of Csa3G118220 vs. NCBI nr
Match: gi|763742087|gb|KJB09586.1| (hypothetical protein B456_001G151200 [Gossypium raimondii])

HSP 1 Score: 68.6 bits (166), Expect = 7.9e-09
Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 14 EGEQKKQKNRKLKAVW----GCVVLVLVSVSGAFLMGWWAVRFHRSQKQQWMVPFSLVLM 73
          E E+ ++K+ +LK +      C+   LVS+SGA ++GWW   +H +  Q W+VPF L+L 
Sbjct: 5  EEERLERKSEELKKIVDTCIACLWSFLVSLSGALMLGWWGYEYHPTNSQLWLVPFGLILF 64

Query: 74 IAPIFVLISVSISSFCN 87
          + P+ +  ++ +S FCN
Sbjct: 65 VTPLIIWFAIFVSYFCN 81

The following BLAST results are available for this feature:

BLAST of Csa3G118220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8F5_CUCSA	1.6e-53	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118220 PE=4 SV=1	[more]
A0A0A0L5S1_CUCSA	6.0e-16	44.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118200 PE=4 SV=1	[more]
M5XS79_PRUPE	4.2e-09	36.46	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017413mg PE=4 SV=1	[more]
N1NKB0_ARADU	4.2e-09	36.17	Putative permease/transmembrane protein OS=Arachis duranensis GN=ARAX_ADH18B08-0...	[more]
A0A0D2PZA1_GOSRA	5.5e-09	36.36	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G151200 PE=4 SV=1	[more]

BLAST of Csa3G118220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201253\|gb\|KGN56386.1\|	2.3e-53	100.00	hypothetical protein Csa_3G118220 [Cucumis sativus]	[more]
gi\|700201251\|gb\|KGN56384.1\|	8.7e-16	44.12	hypothetical protein Csa_3G118200 [Cucumis sativus]	[more]
gi\|574139383\|emb\|CCW28738.1\|	6.0e-09	36.17	putative permease/transmembrane protein [Arachis duranensis]	[more]
gi\|596052374\|ref\|XP_007220681.1\|	6.0e-09	36.46	hypothetical protein PRUPE_ppa017413mg [Prunus persica]	[more]
gi\|763742087\|gb\|KJB09586.1\|	7.9e-09	36.36	hypothetical protein B456_001G151200 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G118220.1	Csa3G118220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35165	FAMILY NOT NAMED	coord: 31..91 score: 1.8
None	No IPR available	PANTHER	PTHR35165:SF1	SUBFAMILY NOT NAMED	coord: 31..91 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G118220	Watermelon (97103) v2	cuwmbB204
Csa3G118220	Wax gourd	cuwgoB284
Csa3G118220	Cucumber (Gy14) v1	cgycuB366
Csa3G118220	Cucurbita maxima (Rimu)	cmacuB253
Csa3G118220	Cucurbita maxima (Rimu)	cmacuB818
Csa3G118220	Cucurbita maxima (Rimu)	cmacuB830
Csa3G118220	Cucurbita moschata (Rifu)	cmocuB239
Csa3G118220	Cucurbita moschata (Rifu)	cmocuB806
Csa3G118220	Melon (DHL92) v3.5.1	cumeB236
Csa3G118220	Watermelon (Charleston Gray)	cuwcgB222
Csa3G118220	Watermelon (97103) v1	cuwmB233
Csa3G118220	Cucurbita pepo (Zucchini)	cpecuB609
Csa3G118220	Cucurbita pepo (Zucchini)	cpecuB862
Csa3G118220	Bottle gourd (USVL1VR-Ls)	culsiB209
Csa3G118220	Cucumber (Gy14) v2	cgybcuB109
Csa3G118220	Melon (DHL92) v3.6.1	cumedB223
Csa3G118220	Silver-seed gourd	carcuB1007