Csa3G064250 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G064250
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Probable receptor-like protein kinase
Location	Chr3 : 3728467 .. 3728949 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAATCATTCACTCTCATCTCCCTCTTCCATTCCAATTTTTCCCTCGACCACTTGCTCTGTACCCACCATTTCCATGGAAATGGTTGATTTCCGTACCCTTCTCTCTCACATTTTCTTGTCTTCTCTTCTTCTCTCTTCATGTTCAACCATACACTTCCCCAGATAATTATTTTCTTAACTGTGGATCACAGACCACTGTTTTTAGTGCTGGCCGAACTTTCATCGGCGCGAATGCCACCAATACTATCAGTTTCAGATTCACCCCCCAGAACTTCGGCCAAGTCGTCGATCATTCCACCGAGTCTCCAACTCTGTACGATTCCAATAGAATTTTCAAGGACTCATCGTTTTACGAATTCGAAGTCGACCAAGATGTTGTCCATATTGTACGTCTTCATTTCTCCCCTTTCAATTTCTCCACTGATTTATCCACATCCCTTTTCAACGTTTCTGCGGTTTCTCCTTCTACGAAACATTAA

mRNA sequence

ATGTTAATCATTCACTCTCATCTCCCTCTTCCATTCCAATTTTTCCCTCGACCACTTGCTCTGTACCCACCATTTCCATGGAAATGGTTGATTTCCACCACTGTTTTTAGTGCTGGCCGAACTTTCATCGGCGCGAATGCCACCAATACTATCAGTTTCAGATTCACCCCCCAGAACTTCGGCCAAGTCGTCGATCATTCCACCGAGTCTCCAACTCTGTACGATTCCAATAGAATTTTCAAGGACTCATCGTTTTACGAATTCGAAGTCGACCAAGATGTTGTCCATATTGTACGTCTTCATTTCTCCCCTTTCAATTTCTCCACTGATTTATCCACATCCCTTTTCAACGTTTCTGCGGTTTCTCCTTCTACGAAACATTAA

Coding sequence (CDS)

ATGTTAATCATTCACTCTCATCTCCCTCTTCCATTCCAATTTTTCCCTCGACCACTTGCTCTGTACCCACCATTTCCATGGAAATGGTTGATTTCCACCACTGTTTTTAGTGCTGGCCGAACTTTCATCGGCGCGAATGCCACCAATACTATCAGTTTCAGATTCACCCCCCAGAACTTCGGCCAAGTCGTCGATCATTCCACCGAGTCTCCAACTCTGTACGATTCCAATAGAATTTTCAAGGACTCATCGTTTTACGAATTCGAAGTCGACCAAGATGTTGTCCATATTGTACGTCTTCATTTCTCCCCTTTCAATTTCTCCACTGATTTATCCACATCCCTTTTCAACGTTTCTGCGGTTTCTCCTTCTACGAAACATTAA

Protein sequence

MLIIHSHLPLPFQFFPRPLALYPPFPWKWLISTTVFSAGRTFIGANATNTISFRFTPQNFGQVVDHSTESPTLYDSNRIFKDSSFYEFEVDQDVVHIVRLHFSPFNFSTDLSTSLFNVSAVSPSTKH*

Homology

[Close]

BLAST of Csa3G064250 vs. Swiss-Prot
Match: Y2232_ARATH (Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-11
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 33  TTVFSAGRTFIGANATNTISFRFTPQNFGQVVDHSTESPTLYDSNRIFKDSSFYEFEVDQ 92
           + VF  G+TF+G   ++T S  FT +    + D S+ +P +Y + RIF+  S Y+F++D 
Sbjct: 47  SNVFYGGQTFVGDTNSSTNSVSFTNKGTEVINDQSSVAPEIYRTVRIFRHPSSYKFKLDS 106

Query: 93  DVVHIVRLHFSPFNFSTDLSTSLFNVSAVSPSTKH 128
             +H VRLHFS      DL T+ F VSA S S  H
Sbjct: 107 LGLHFVRLHFSVVFSRADLLTARFTVSATSGSNHH 141

[Close]

BLAST of Csa3G064250 vs. TrEMBL
Match: A0A0A0L7J1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G064250 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 3.6e-68
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MLIIHSHLPLPFQFFPRPLALYPPFPWKWLISTTVFSAGRTFIGANATNTISFRFTPQNF 60
           MLIIHSHLPLPFQFFPRPLALYPPFPWKWLISTTVFSAGRTFIGANATNTISFRFTPQNF
Sbjct: 1   MLIIHSHLPLPFQFFPRPLALYPPFPWKWLISTTVFSAGRTFIGANATNTISFRFTPQNF 60

Query: 61  GQVVDHSTESPTLYDSNRIFKDSSFYEFEVDQDVVHIVRLHFSPFNFSTDLSTSLFNVSA 120
           GQVVDHSTESPTLYDSNRIFKDSSFYEFEVDQDVVHIVRLHFSPFNFSTDLSTSLFNVSA
Sbjct: 61  GQVVDHSTESPTLYDSNRIFKDSSFYEFEVDQDVVHIVRLHFSPFNFSTDLSTSLFNVSA 120

Query: 121 VSPSTKH 128
           VSPSTKH
Sbjct: 121 VSPSTKH 127

[Close]

BLAST of Csa3G064250 vs. TrEMBL
Match: A0A0A0KIE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G492240 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 9.0e-35
Identity = 84/122 (68.85%), Postives = 94/122 (77.05%), Query Frame = 1


Query: 4   IHSHLPLPFQFFPRPLALYPPFPWKWLIS----TTVFSAGRTFIG-ANATNTISFRFTPQ 63
           + SH+ L   FF   +  Y   P K+ ++    TTVF+AGR+FIG  N TNTISFRF P 
Sbjct: 64  LFSHIFLCLLFFSLHVQSYTS-PDKYFVNCGSQTTVFNAGRSFIGDLNTTNTISFRFIPH 123

Query: 64  NFGQVVDHSTESPTLYDSNRIFKDSSFYEFEVDQDVVHIVRLHFSPFNFSTDLSTSLFNV 121
           N GQVVDHSTESP+LYDS RIFKD SFYEFEVDQD VHIVRLHFSPFNFSTDLSTS+FNV
Sbjct: 124 NSGQVVDHSTESPSLYDSIRIFKDPSFYEFEVDQDTVHIVRLHFSPFNFSTDLSTSVFNV 183

[Close]

BLAST of Csa3G064250 vs. TrEMBL
Match: A5BGL8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030033 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 53/121 (43.80%), Postives = 72/121 (59.50%), Query Frame = 1


Query: 7   HLPLPFQFFP-RPLALYPPFPWKWLIS----TTVFSAGRTFIGANATNTISFRFTPQNFG 66
           HL LP Q    + L+L    P K+ I+          GRTF+G + ++  SF  +P+   
Sbjct: 15  HLLLPLQLLSLQSLSLSYTPPSKYFINCGSQNNTNHTGRTFVG-DVSSDSSFTLSPKRDD 74

Query: 67  QVVDHSTESPT---LYDSNRIFKDSSFYEFEVDQDVVHIVRLHFSPFNFSTDLSTSLFNV 120
            VVD S+ SPT   LY + RIFK SS Y F +DQ+  ++VRLHF PF+  TDLST+LF+V
Sbjct: 75  PVVD-SSPSPTTSQLYQTARIFKGSSSYVFHIDQNGTYLVRLHFFPFSSPTDLSTALFDV 133

[Close]

BLAST of Csa3G064250 vs. TrEMBL
Match: D7TTE0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0129g00970 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 53/121 (43.80%), Postives = 72/121 (59.50%), Query Frame = 1


Query: 7   HLPLPFQFFP-RPLALYPPFPWKWLIS----TTVFSAGRTFIGANATNTISFRFTPQNFG 66
           HL LP Q    + L+L    P K+ I+          GRTF+G + ++  SF  +P+   
Sbjct: 15  HLLLPLQLLSLQSLSLSYTPPSKYFINCGSQNNTNHTGRTFVG-DVSSDSSFTLSPKRDD 74

Query: 67  QVVDHSTESPT---LYDSNRIFKDSSFYEFEVDQDVVHIVRLHFSPFNFSTDLSTSLFNV 120
            VVD S+ SPT   LY + RIFK SS Y F +DQ+  ++VRLHF PF+  TDLST+LF+V
Sbjct: 75  PVVD-SSPSPTTSQLYQTARIFKGSSSYVFHIDQNGTYLVRLHFFPFSSPTDLSTALFDV 133

[Close]

BLAST of Csa3G064250 vs. TrEMBL
Match: A0A0A0KPV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G585450 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 1


Query: 32  STTVFSAGRTFIG-ANATNTISFRFTPQNFGQVVDHSTESPTLYDSNRIFKDSSFYEFEV 91
           +  V   GR FIG  NAT+T  FRFT +N       + E   L DS R+F + +FYEF++
Sbjct: 39  TNAVDDTGRIFIGDLNATDT--FRFTSEN-------TKELSHLNDSVRVFNEPAFYEFDI 98

Query: 92  DQDVVHIVRLHFSPFNFSTDLSTSLFNVSA 121
           ++D  +IVRLHF+P NF+ DLS++LF+VSA
Sbjct: 99  EEDAFYIVRLHFTPSNFTADLSSALFDVSA 119

[Close]

BLAST of Csa3G064250 vs. TAIR10
Match: AT2G23200.1 (AT2G23200.1 Protein kinase superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-12
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 33  TTVFSAGRTFIGANATNTISFRFTPQNFGQVVDHSTESPTLYDSNRIFKDSSFYEFEVDQ 92
           + VF  G+TF+G   ++T S  FT +    + D S+ +P +Y + RIF+  S Y+F++D 
Sbjct: 47  SNVFYGGQTFVGDTNSSTNSVSFTNKGTEVINDQSSVAPEIYRTVRIFRHPSSYKFKLDS 106

Query: 93  DVVHIVRLHFSPFNFSTDLSTSLFNVSAVSPSTKH 128
             +H VRLHFS      DL T+ F VSA S S  H
Sbjct: 107 LGLHFVRLHFSVVFSRADLLTARFTVSATSGSNHH 141

[Close]

BLAST of Csa3G064250 vs. NCBI nr
Match: gi|700200943|gb|KGN56076.1| (hypothetical protein Csa_3G064250 [Cucumis sativus])

HSP 1 Score: 265.4 bits (677), Expect = 5.2e-68
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MLIIHSHLPLPFQFFPRPLALYPPFPWKWLISTTVFSAGRTFIGANATNTISFRFTPQNF 60
           MLIIHSHLPLPFQFFPRPLALYPPFPWKWLISTTVFSAGRTFIGANATNTISFRFTPQNF
Sbjct: 1   MLIIHSHLPLPFQFFPRPLALYPPFPWKWLISTTVFSAGRTFIGANATNTISFRFTPQNF 60

Query: 61  GQVVDHSTESPTLYDSNRIFKDSSFYEFEVDQDVVHIVRLHFSPFNFSTDLSTSLFNVSA 120
           GQVVDHSTESPTLYDSNRIFKDSSFYEFEVDQDVVHIVRLHFSPFNFSTDLSTSLFNVSA
Sbjct: 61  GQVVDHSTESPTLYDSNRIFKDSSFYEFEVDQDVVHIVRLHFSPFNFSTDLSTSLFNVSA 120

Query: 121 VSPSTKH 128
           VSPSTKH
Sbjct: 121 VSPSTKH 127

[Close]

BLAST of Csa3G064250 vs. NCBI nr
Match: gi|659079575|ref|XP_008440330.1| (PREDICTED: probable receptor-like protein kinase At2g23200 [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 3.4e-35
Identity = 87/124 (70.16%), Postives = 93/124 (75.00%), Query Frame = 1


Query: 2   LIIHSHLPLPFQFFPRPLALYPPFPWKWLIS----TTVFSAGRTFIG-ANATNTISFRFT 61
           L  H  L L F    +P       P K+ ++    TTVF+AGRTFIG  N TNTISFRFT
Sbjct: 12  LFSHIFLCLLFSLHVQPYTS----PNKYFVNCGSQTTVFNAGRTFIGDLNTTNTISFRFT 71

Query: 62  PQNFGQVVDHSTESPTLYDSNRIFKDSSFYEFEVDQDVVHIVRLHFSPFNFSTDLSTSLF 121
           PQN  QVVDHSTESP+LYDS RIFKD SFYEFEVDQD VHIVRLHFSPFNFSTDLSTSLF
Sbjct: 72  PQNSDQVVDHSTESPSLYDSIRIFKDPSFYEFEVDQDAVHIVRLHFSPFNFSTDLSTSLF 131

[Close]

BLAST of Csa3G064250 vs. NCBI nr
Match: gi|778718521|ref|XP_011657881.1| (PREDICTED: probable receptor-like protein kinase At2g23200 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-34
Identity = 84/122 (68.85%), Postives = 94/122 (77.05%), Query Frame = 1


Query: 4   IHSHLPLPFQFFPRPLALYPPFPWKWLIS----TTVFSAGRTFIG-ANATNTISFRFTPQ 63
           + SH+ L   FF   +  Y   P K+ ++    TTVF+AGR+FIG  N TNTISFRF P 
Sbjct: 64  LFSHIFLCLLFFSLHVQSYTS-PDKYFVNCGSQTTVFNAGRSFIGDLNTTNTISFRFIPH 123

Query: 64  NFGQVVDHSTESPTLYDSNRIFKDSSFYEFEVDQDVVHIVRLHFSPFNFSTDLSTSLFNV 121
           N GQVVDHSTESP+LYDS RIFKD SFYEFEVDQD VHIVRLHFSPFNFSTDLSTS+FNV
Sbjct: 124 NSGQVVDHSTESPSLYDSIRIFKDPSFYEFEVDQDTVHIVRLHFSPFNFSTDLSTSVFNV 183

[Close]

BLAST of Csa3G064250 vs. NCBI nr
Match: gi|700193360|gb|KGN48564.1| (hypothetical protein Csa_6G492240 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-34
Identity = 84/122 (68.85%), Postives = 94/122 (77.05%), Query Frame = 1


Query: 4   IHSHLPLPFQFFPRPLALYPPFPWKWLIS----TTVFSAGRTFIG-ANATNTISFRFTPQ 63
           + SH+ L   FF   +  Y   P K+ ++    TTVF+AGR+FIG  N TNTISFRF P 
Sbjct: 64  LFSHIFLCLLFFSLHVQSYTS-PDKYFVNCGSQTTVFNAGRSFIGDLNTTNTISFRFIPH 123

Query: 64  NFGQVVDHSTESPTLYDSNRIFKDSSFYEFEVDQDVVHIVRLHFSPFNFSTDLSTSLFNV 121
           N GQVVDHSTESP+LYDS RIFKD SFYEFEVDQD VHIVRLHFSPFNFSTDLSTS+FNV
Sbjct: 124 NSGQVVDHSTESPSLYDSIRIFKDPSFYEFEVDQDTVHIVRLHFSPFNFSTDLSTSVFNV 183

[Close]

BLAST of Csa3G064250 vs. NCBI nr
Match: gi|659092294|ref|XP_008446997.1| (PREDICTED: probable receptor-like protein kinase At5g24010 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 9.0e-12
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 1


Query: 32  STTVFSAGRTFIG-ANATNTISFRFTPQNFGQVVDHSTESPTLYDSNRIFKDSSFYEFEV 91
           +  V   GR FIG  NAT+T  FRFT        D+STE   L DS R+F   +FYEF++
Sbjct: 39  TNVVDDTGRIFIGDLNATDT--FRFTS-------DNSTELSHLNDSVRVFNQPAFYEFDI 98

Query: 92  DQDVVHIVRLHFSPFNFSTDLSTSLFNVSA 121
           ++D V+IVRLHFS  NF  DLS++LF+VSA
Sbjct: 99  EEDAVYIVRLHFSSSNFMADLSSALFDVSA 119

The following BLAST results are available for this feature:

BLAST of Csa3G064250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y2232_ARATH	2.6e-11	40.00	Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g2...	[more]

BLAST of Csa3G064250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7J1_CUCSA	3.6e-68	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G064250 PE=4 SV=1	[more]
A0A0A0KIE5_CUCSA	9.0e-35	68.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G492240 PE=4 SV=1	[more]
A5BGL8_VITVI	1.1e-11	43.80	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030033 PE=3 SV=1	[more]
D7TTE0_VITVI	1.1e-11	43.80	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0129g00970 PE=3 SV=...	[more]
A0A0A0KPV1_CUCSA	1.8e-11	47.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G585450 PE=3 SV=1	[more]

BLAST of Csa3G064250 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23200.1	1.5e-12	40.00	Protein kinase superfamily protein	[more]

BLAST of Csa3G064250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200943\|gb\|KGN56076.1\|	5.2e-68	100.00	hypothetical protein Csa_3G064250 [Cucumis sativus]	[more]
gi\|659079575\|ref\|XP_008440330.1\|	3.4e-35	70.16	PREDICTED: probable receptor-like protein kinase At2g23200 [Cucumis melo]	[more]
gi\|778718521\|ref\|XP_011657881.1\|	1.3e-34	68.85	PREDICTED: probable receptor-like protein kinase At2g23200 [Cucumis sativus]	[more]
gi\|700193360\|gb\|KGN48564.1\|	1.3e-34	68.85	hypothetical protein Csa_6G492240 [Cucumis sativus]	[more]
gi\|659092294\|ref\|XP_008446997.1\|	9.0e-12	51.11	PREDICTED: probable receptor-like protein kinase At5g24010 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G064250.1	Csa3G064250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR27003	FAMILY NOT NAMED	coord: 5..120 score: 1.1
None	No IPR available	PANTHER	PTHR27003:SF6	SUBFAMILY NOT NAMED	coord: 5..120 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G064250	CSPI03G04640	Wild cucumber (PI 183967)	cpicuB120
Csa3G064250	CsGy3G004690	Cucumber (Gy14) v2	cgybcuB109

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G064250	Watermelon (97103) v2	cuwmbB181
Csa3G064250	Wax gourd	cuwgoB218
Csa3G064250	Cucumber (Gy14) v1	cgycuB014
Csa3G064250	Cucurbita maxima (Rimu)	cmacuB019
Csa3G064250	Cucurbita maxima (Rimu)	cmacuB327
Csa3G064250	Cucurbita maxima (Rimu)	cmacuB820
Csa3G064250	Cucurbita moschata (Rifu)	cmocuB010
Csa3G064250	Cucurbita moschata (Rifu)	cmocuB315
Csa3G064250	Cucurbita moschata (Rifu)	cmocuB811
Csa3G064250	Melon (DHL92) v3.5.1	cumeB243
Csa3G064250	Watermelon (Charleston Gray)	cuwcgB189
Csa3G064250	Watermelon (97103) v1	cuwmB194
Csa3G064250	Cucurbita pepo (Zucchini)	cpecuB213
Csa3G064250	Cucurbita pepo (Zucchini)	cpecuB781
Csa3G064250	Bottle gourd (USVL1VR-Ls)	culsiB198
Csa3G064250	Melon (DHL92) v3.6.1	cumedB224
Csa3G064250	Silver-seed gourd	carcuB0517
Csa3G064250	Silver-seed gourd	carcuB0921