Csa3G063670 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G063670
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 3651700 .. 3652616 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCCATAATTCAATAAATGAAGAAGACCATTTCAGTCCAACTTTTAGTATGTGTGTTGTGAAGGGGTCAAAAACTTATTTCTCGTTGTCCATAGGAATAAAAACAAACGAGAGTTAGATCAAACATTTTTCTATTAACTTTACAATCCCTCGTTAGGTCAATTCTACTGTTACAAATAAACATATGTAATATTTTTATTGTTGTCTATTTACAAATAAACTCTACTAGCTTGTTTATAGAGTTGTTAAGAGTAAGGTTAATTAAGGTGAAACAATATAAAGAGGTCATGGACAACTACCTAATTTCCATATCTATATAAAATTTTTTTAAAAAAATTTTAAAAAATTATTACAAATAATTATCTAACAAATCGCATATATAAATAAAATTTAATCACATTAATATATCTTATTTGACATTTAGAGAGTGTTGTAGACTCAAATTTTGTTCGTATTAGGGTTAATGTTGTTTCAAAATCTTGACCAAGCAATTAAAATAATAGGGTGTACTAAAAATACAAACAATAATAGGAAAAAATAAAATAATCACAAATCATACTTTTTATAAATTAAAATTAAGGATTAAAAAAAAAAGAATTAAGAAAAAAGAGACTACAAGCAACCCAGCGGTTCGCACTTGTCTCTTTCTCTTGCAATTCTCATTTCTCTCCGGCAGCGGCTACTACGACGGCGACGCGGCTTCTCTCGGGTCACGATCAGGTGACGGCGCAACCCACCTCAGATCTGCAATACAACCCACCTCCAGCGTTTGATCGCCTACGCAACAACGTATCTCCGCCACACTCGGATCTGCAACGGCCTCACCTCGGGTCGCTGGATCTGGCTACACACACATCTCGACGGGTCCGATCTACGGTGGAAAGTCATTCGGACGACGATCGAGACTCGCGGTAA

mRNA sequence

ATGCCCCATAATTCAATAAATGAAGAAGACCATTTCAGTCCAACTTTTACGGCTACTACGACGGCGACGCGGCTTCTCTCGGGTCACGATCAGGTGACGGCGCAACCCACCTCAGATCTGCAATACAACCCACCTCCAGCGTTTGATCGCCTACGCAACAACGTATCTCCGCCACACTCGGATCTGCAACGGCCTCACCTCGGGTCGCTGGATCTGGCTACACACACATCTCGACGGGTCCGATCTACGGTGGAAAGTCATTCGGACGACGATCGAGACTCGCGGTAA

Coding sequence (CDS)

ATGCCCCATAATTCAATAAATGAAGAAGACCATTTCAGTCCAACTTTTACGGCTACTACGACGGCGACGCGGCTTCTCTCGGGTCACGATCAGGTGACGGCGCAACCCACCTCAGATCTGCAATACAACCCACCTCCAGCGTTTGATCGCCTACGCAACAACGTATCTCCGCCACACTCGGATCTGCAACGGCCTCACCTCGGGTCGCTGGATCTGGCTACACACACATCTCGACGGGTCCGATCTACGGTGGAAAGTCATTCGGACGACGATCGAGACTCGCGGTAA

Protein sequence

MPHNSINEEDHFSPTFTATTTATRLLSGHDQVTAQPTSDLQYNPPPAFDRLRNNVSPPHSDLQRPHLGSLDLATHTSRRVRSTVESHSDDDRDSR*
Homology
[Close]
BLAST of Csa3G063670 vs. TrEMBL
Match: A0A0A0L663_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063670 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MPHNSINEEDHFSPTFTATTTATRLLSGHDQVTAQPTSDLQYNPPPAFDRLRNNVSPPHS 60
          MPHNSINEEDHFSPTFTATTTATRLLSGHDQVTAQPTSDLQYNPPPAFDRLRNNVSPPHS
Sbjct: 1  MPHNSINEEDHFSPTFTATTTATRLLSGHDQVTAQPTSDLQYNPPPAFDRLRNNVSPPHS 60

Query: 61 DLQRPHLGSLDLATHTSRRVRSTVESHSDDDRDSR 96
          DLQRPHLGSLDLATHTSRRVRSTVESHSDDDRDSR
Sbjct: 61 DLQRPHLGSLDLATHTSRRVRSTVESHSDDDRDSR 95

[Close]
BLAST of Csa3G063670 vs. NCBI nr
Match: gi|700200934|gb|KGN56067.1| (hypothetical protein Csa_3G063670 [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 2.6e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MPHNSINEEDHFSPTFTATTTATRLLSGHDQVTAQPTSDLQYNPPPAFDRLRNNVSPPHS 60
          MPHNSINEEDHFSPTFTATTTATRLLSGHDQVTAQPTSDLQYNPPPAFDRLRNNVSPPHS
Sbjct: 1  MPHNSINEEDHFSPTFTATTTATRLLSGHDQVTAQPTSDLQYNPPPAFDRLRNNVSPPHS 60

Query: 61 DLQRPHLGSLDLATHTSRRVRSTVESHSDDDRDSR 96
          DLQRPHLGSLDLATHTSRRVRSTVESHSDDDRDSR
Sbjct: 61 DLQRPHLGSLDLATHTSRRVRSTVESHSDDDRDSR 95

The following BLAST results are available for this feature:
BLAST of Csa3G063670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L663_CUCSA1.8e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063670 PE=4 SV=1[more]
BLAST of Csa3G063670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200934|gb|KGN56067.1|2.6e-48100.00hypothetical protein Csa_3G063670 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU110296cucumber EST collection version 3.0transcribed_cluster
CU122957cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G063670.1Csa3G063670.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU110296CU110296transcribed_cluster
CU122957CU122957transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G063670CsGy3G004590Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G063670Bottle gourd (USVL1VR-Ls)culsiB198
Csa3G063670Melon (DHL92) v3.6.1cumedB224
Csa3G063670Silver-seed gourdcarcuB0517
Csa3G063670Silver-seed gourdcarcuB0614
Csa3G063670Silver-seed gourdcarcuB0921
Csa3G063670Watermelon (97103) v2cuwmbB181
Csa3G063670Wax gourdcuwgoB218
Csa3G063670Cucumber (Gy14) v1cgycuB014
Csa3G063670Cucurbita maxima (Rimu)cmacuB019
Csa3G063670Cucurbita maxima (Rimu)cmacuB327
Csa3G063670Cucurbita maxima (Rimu)cmacuB820
Csa3G063670Cucurbita moschata (Rifu)cmocuB010
Csa3G063670Cucurbita moschata (Rifu)cmocuB315
Csa3G063670Cucurbita moschata (Rifu)cmocuB811
Csa3G063670Melon (DHL92) v3.5.1cumeB243
Csa3G063670Watermelon (Charleston Gray)cuwcgB189
Csa3G063670Watermelon (97103) v1cuwmB194
Csa3G063670Cucurbita pepo (Zucchini)cpecuB213
Csa3G063670Cucurbita pepo (Zucchini)cpecuB781