Csa3G043930 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G043930
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionDNA-directed RNA polymerase III subunit RPC6; contains IPR016049 (RNA polymerase Rpc34-like)
LocationChr3 : 3035392 .. 3038016 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGACGGCCATTCTAACAGCCTGGTACACTAAAATTATTTACTCTGGCAAAATTATACTTCAATGTTTGATGCATGTCTAAAGCTTAATAATCTAAATTAAACATGATCTTTGAAGCTCTCGATTGAAACTTCTTATTATGCCTTGTGGTTATGGTTTCTCGATGAACCTGGGATTGGGGTGGAGAAAAAAGAGGATTTAACAAGTATCTAACCACACTGAAAGATGATTTATCCCAAGTACTTGATCATGGTACTCGGTCTGGGATCTTTACTGTTCATGCCAATCTGTTTTTAGTAGACGAGCTAAATATGCAAGTAATCTAGCTAGCCAGTGAGTCAGGTCTACGATTATCGTTTTCTCTTTGGAAGTCTTAGTTTTTTTTTTCTTGTCAGGGATAGTTTTTGCATTCTAACTATGGAAAAGAAGGATTGTCGTTTTTCTACTCTTGCTACACAAACATGTAACTGTGGAGCATTATTGCAGCTCTTTACTTTTTTCACCTTACCTGCTTTCAACTTTTGGTATACTGAAATTATATTTGTTCCCCATCAGTTACTACAGGAGAATGGAATTGTTCAGTCGGGACTCTTTTTATTACATTATATTTCATGCCCCTTTATCTCCGTCCTCAGTTTTTTCCTCGTGTCGAAACTGTCAAGGATTATAAGTTCAAGTTACAAGCTTTTGAATATGGCTTCTCTTGAAGCTGTTTTAGCTTGTAACAAAAAAATTAGCTCTTTCAATCTCTTAGTTCAGTGGCTGAATGCTTAAAAAGGTTGTATTATTTTGTATCTAGATACATATCTTAGAATCAGATGGTTTGAAGATTAAGAACATATTTATTGTTCTTACTACTAGGAGTTTGTTAATGCCTTGAAACGTTCGACTCCTAAAGCAAAAAATAATGTTGTGTAGAAGAGATCTTCTATGTTTCCTGTTCCTGTTTTGGTCATTGTATTAATTATTGTAAGTACCAGTACTACAATCCGCTGAAACAAGCACAGAGAATTAAGTTGTTATCTATGTGATTTGATTTCGCCCTCTCTGTTGGGTGACTTCTTTTTATTACATTGTTCATATGTGATTTTGTTTATGGCAAAGGGAGCTACTTATAATTGTGACTTCCAAGTAAGAATAATAAACGTAGATGGTTTGTTCTTACTTTTTAAACTTTGCAAACATTAGAATTTAAAAATGAAAAAAAAAAGAAAATTACAATCCAAACCAACCCATATTTTATGGTTTGGGTTGAGTTGAAAACTTAATTCGGGTTGCCAACCCAACTAACCCGAAAATATGGGTTGGGTTGAGAATATCTCCCAACCCAACCCGTTTATACCCCTAGTTCGAATTCGTAAAAAAATTGAAAAATTTAGTGCTAGATTTTAGTTTTGTTCCCCTGTTTCCTTTATTTTAGTGAGTGATTTGAATCTGATTATATAACCATTTTAATATTTTGTTTTACACTTTTTCAAAGGTAATTCTGAATGATTTGAAGGTGTTTTTTTGTGTGTGATTATTGTTTGTTAGTTTTTATATATATTGAAAGTTTGATGTTTTGCTGGATCGGGAAAAGGAGTTTTCTTTACAGATTACTCAAATTTAGTTTCATTAATGTCAGTGACATGAATTTTTTAAAAATAATGAAAACTAATATTAGACACTCTCAACATCTATTAGTTTGACCAGATTTGGATTATCCGTAAAGAAAAAACACTCTCGGCGAAATGAGTATCGGTTGTTTTTGTTAAGAAGCATGGTAGAAAGCAAATTATTAGACACTCAACATCAATTTGTTTGAAACACTATAATATTTGGTGCAGCAATGAGGAAATCAGAAGGGCCATCATCACTCAAGAGAAAAAGGCCAGATTTGGGTACGAAAAATTCGTCTGGAGGAGCTCTAATTGGGCAAGAAAAAGTTCTCTATGACCTAATTTGCAGCAAGCAAAGCATGGGGATTTGCACTTTTGACATGAAAAGAGAGACAAAGTTTGCTGAAAGTGTAGTAACAAAATCCCTCAAGTCTCTTCAAACCAAAGGCCTGATAAAGATAGTCCAACACTATCAAAACAAAGGCAAGAAGTTCTACCTATCAAATGACTTCGAACCAGCTAAGGAATTAACCGGTGGTAACTGGTATCGTGACGGGGAGCTCGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAAAGGAAGAAGTTGATGACCATTGAAGGAATTGTGGAGTCTTTCAAACAGAGTGGTGCTTTCAAAGTAGAGTTGTCAAGAGAGCAAATTGAGGAGATTGTAAATGCTTTGGTGTTGGACAATCAGGTGATGGAAGTGAAGAGCTCTGGATTTGGTGAATTTGAATTTATTCCAATTGGGAAGATTTGTTATAAGTATTGTACTCAAGGAGGAGGCCTCAAAGGGGAGCCTAAAACAGGGGCAATGGCTTCCATTCCTTGTGGAGTTTGTCCAAGGATCACTTATTGTACCCCAAATGGCATCATTTCTCCTGCTACCTGTGTCTATTATACCAAGTGGTTAGATTTTTAAGTTGAACCATTTTGAAGATTTTTACACATAATGTGCATATGTATTTAAACTTATCTTGAGTTCTGGA

mRNA sequence

ATGAGGAAATCAGAAGGGCCATCATCACTCAAGAGAAAAAGGCCAGATTTGGGTACGAAAAATTCGTCTGGAGGAGCTCTAATTGGGCAAGAAAAAGTTCTCTATGACCTAATTTGCAGCAAGCAAAGCATGGGGATTTGCACTTTTGACATGAAAAGAGAGACAAAGTTTGCTGAAAGTGTAGTAACAAAATCCCTCAAGTCTCTTCAAACCAAAGGCCTGATAAAGATAGTCCAACACTATCAAAACAAAGGCAAGAAGTTCTACCTATCAAATGACTTCGAACCAGCTAAGGAATTAACCGGTGGTAACTGGTATCGTGACGGGGAGCTCGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAAAGGAAGAAGTTGATGACCATTGAAGGAATTGTGGAGTCTTTCAAACAGAGTGGTGCTTTCAAAGTAGAGTTGTCAAGAGAGCAAATTGAGGAGATTGTAAATGCTTTGGTGTTGGACAATCAGGTGATGGAAGTGAAGAGCTCTGGATTTGGTGAATTTGAATTTATTCCAATTGGGAAGATTTGTTATAAGTATTGTACTCAAGGAGGAGGCCTCAAAGGGGAGCCTAAAACAGGGGCAATGGCTTCCATTCCTTGTGGAGTTTGTCCAAGGATCACTTATTGTACCCCAAATGGCATCATTTCTCCTGCTACCTGTGTCTATTATACCAAGTGGTTAGATTTTTAA

Coding sequence (CDS)

ATGAGGAAATCAGAAGGGCCATCATCACTCAAGAGAAAAAGGCCAGATTTGGGTACGAAAAATTCGTCTGGAGGAGCTCTAATTGGGCAAGAAAAAGTTCTCTATGACCTAATTTGCAGCAAGCAAAGCATGGGGATTTGCACTTTTGACATGAAAAGAGAGACAAAGTTTGCTGAAAGTGTAGTAACAAAATCCCTCAAGTCTCTTCAAACCAAAGGCCTGATAAAGATAGTCCAACACTATCAAAACAAAGGCAAGAAGTTCTACCTATCAAATGACTTCGAACCAGCTAAGGAATTAACCGGTGGTAACTGGTATCGTGACGGGGAGCTCGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAAAGGAAGAAGTTGATGACCATTGAAGGAATTGTGGAGTCTTTCAAACAGAGTGGTGCTTTCAAAGTAGAGTTGTCAAGAGAGCAAATTGAGGAGATTGTAAATGCTTTGGTGTTGGACAATCAGGTGATGGAAGTGAAGAGCTCTGGATTTGGTGAATTTGAATTTATTCCAATTGGGAAGATTTGTTATAAGTATTGTACTCAAGGAGGAGGCCTCAAAGGGGAGCCTAAAACAGGGGCAATGGCTTCCATTCCTTGTGGAGTTTGTCCAAGGATCACTTATTGTACCCCAAATGGCATCATTTCTCCTGCTACCTGTGTCTATTATACCAAGTGGTTAGATTTTTAA

Protein sequence

MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF*
Homology
[Close]
BLAST of Csa3G043930 vs. Swiss-Prot
Match: RPC6_MOUSE (DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus GN=Polr3f PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-23
Identity = 72/232 (31.03%), Postives = 115/232 (49.57%), Query Frame = 1 

Query: 30  QEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFY 89
           QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      KK Y
Sbjct: 91  QEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVY 150

Query: 90  LSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEG----IVE---SF 149
           +  + +P + +TGG WY D + + +++  L Q C + +Q K     E     +++   SF
Sbjct: 151 MLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRNSSF 210

Query: 150 KQS----------GAFKVELSREQIEEIVNALVLDNQV-MEVKSSGFGEFEFIPIGKICY 209
             S          G  KVELS E IE I+N L+ D +V M + ++  G    +      Y
Sbjct: 211 ASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLY 270

Query: 210 KYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 244
           +           P TG + + PCG+CP    C   G ISP+ C+Y T+WL+F
Sbjct: 271 RAVN-----PILPPTGVVRA-PCGLCPVFEDCHEGGEISPSNCIYMTEWLEF 316

[Close]
BLAST of Csa3G043930 vs. Swiss-Prot
Match: RPC6_BOVIN (DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus GN=POLR3F PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.4e-23
Identity = 72/232 (31.03%), Postives = 112/232 (48.28%), Query Frame = 1 

Query: 30  QEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFY 89
           QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      KK Y
Sbjct: 91  QEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVY 150

Query: 90  LSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIV-------ESF 149
           +  + +P + +TGG WY D + + +++  L Q C + +Q K     E           SF
Sbjct: 151 MLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPMIQRNSSF 210

Query: 150 KQS----------GAFKVELSREQIEEIVNALVLDNQV-MEVKSSGFGEFEFIPIGKICY 209
             S          G  KVELS E IE I+N L+ D +V M + ++  G    +      Y
Sbjct: 211 ASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLY 270

Query: 210 KYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 244
           +  +        P TG +   PCG+CP    C   G ISP+ C+Y T+WL+F
Sbjct: 271 RAVS-----PIIPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316

[Close]
BLAST of Csa3G043930 vs. Swiss-Prot
Match: RPC6_HUMAN (DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens GN=POLR3F PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.4e-23
Identity = 72/232 (31.03%), Postives = 111/232 (47.84%), Query Frame = 1 

Query: 30  QEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFY 89
           QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      KK Y
Sbjct: 91  QEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVY 150

Query: 90  LSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIV-------ESF 149
           +  + +P + +TGG WY D + + +++  L Q C + +Q K     E           SF
Sbjct: 151 MLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSF 210

Query: 150 KQS----------GAFKVELSREQIEEIVNALVLDNQV-MEVKSSGFGEFEFIPIGKICY 209
             S          G  KVELS E IE I+N L+ D +V M + ++  G    +      Y
Sbjct: 211 ASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLY 270

Query: 210 KYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 244
           +           P TG +   PCG+CP    C   G ISP+ C+Y T+WL+F
Sbjct: 271 RAVN-----PIIPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316

[Close]
BLAST of Csa3G043930 vs. Swiss-Prot
Match: RPC6_DICDI (DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum GN=polr3f PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.2e-22
Identity = 67/247 (27.13%), Postives = 119/247 (48.18%), Query Frame = 1 

Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           ++ S+  +S K   P+   K    G    ++ ++Y LI +  + G  T ++K  + + + 
Sbjct: 52  IQNSDETTSYKEVNPEDQAKFRGLGV---EDFLIYQLIEASSNTGAWTRELKNSSGYQQV 111

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
            +TK LK+L+++ LIK V+  Q+  KK Y+  + EP++E+TGG  Y D   D  YI  +K
Sbjct: 112 QITKILKTLESRKLIKSVKSIQSGRKKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMK 171

Query: 121 QVCARMIQRKKLMTIEGIVESFKQ--SGAFKVELSREQIEEIVNALVLDNQVMEVKSSGF 180
                 +  K  + +  I+   ++    A    L  E I+ +VN ++ D  + E++ +  
Sbjct: 172 MHIKTFVDNKGAVDLADIITYLRKVAEEATSQSLGPEDIQALVNTVIYDGDIEEMRDTRM 231

Query: 181 GEFEFIPIGK---ICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCV 240
           G      +G+   I YK        K         ++PCG CP    C+ NG++SP  CV
Sbjct: 232 GAM----LGRRSGILYK------PTKTPIPVNNFCNMPCGNCPVFDICSDNGLVSPKRCV 285

Query: 241 YYTKWLD 243
           Y+ ++L+
Sbjct: 292 YFKQYLE 285

[Close]
BLAST of Csa3G043930 vs. Swiss-Prot
Match: RPC6_DROME (Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster GN=CG5380 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 63/230 (27.39%), Postives = 102/230 (44.35%), Query Frame = 1 

Query: 30  QEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFY 89
           +EKV+Y ++    + GI   D++ ++      + K LK+L+TK LIK V+      KK Y
Sbjct: 79  EEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKVY 138

Query: 90  LSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKK-----------------L 149
           +  + EP   +TGG WY+D + + ++++ L Q C R +Q K+                  
Sbjct: 139 MLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMSC 198

Query: 150 MTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGKICYK 209
            T+  + +     G  KV L+   +E I+  +V D     V+    G F +  +      
Sbjct: 199 CTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQD-GSFVYRAVNAPL-- 258

Query: 210 YCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLD 243
                      P TG +  +PCG+CP I  C+  G ++  TC Y   WLD
Sbjct: 259 -----------PPTG-LVQMPCGICPVIKNCSNCGDVTAITCEYMRDWLD 293

[Close]
BLAST of Csa3G043930 vs. TrEMBL
Match: A0A0A0L5W6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G043930 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 1.4e-137
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 1 

Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 243

[Close]
BLAST of Csa3G043930 vs. TrEMBL
Match: B9GLD0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04090g PE=4 SV=2)

HSP 1 Score: 287.0 bits (733), Expect = 2.2e-74
Identity = 135/243 (55.56%), Postives = 186/243 (76.54%), Query Frame = 1 

Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M + +GPSSLKRKRP+L   NS   +L   E++LYD+I SKQ +GI T DMK+E K  ++
Sbjct: 53  MSRVQGPSSLKRKRPEL---NSPVQSLTEHERILYDVIRSKQDIGIWTRDMKKEAKLPDN 112

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VV KSLK+L+ K LIK V + QNKG+K +++ +FEP+KE++GG WY +G LD ++I +L+
Sbjct: 113 VVNKSLKALRVKNLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLR 172

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           Q+C R I++K + T+E + +S     AF V+++++QIEEI+  L+LDN +MEVKS+G GE
Sbjct: 173 QLCKRQIEKKGVATLEEVTDSINSYPAFNVDVTKQQIEEILRTLILDNAIMEVKSNGMGE 232

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           F  IP GK+CY+Y ++ G L GEPK GA+ASIPCGVCPRI++CTP+GIISP TCVYY KW
Sbjct: 233 FASIPFGKVCYRYISK-GALGGEPKAGALASIPCGVCPRISHCTPDGIISPKTCVYYQKW 291

Query: 241 LDF 244
           LDF
Sbjct: 293 LDF 291

[Close]
BLAST of Csa3G043930 vs. TrEMBL
Match: F6HD53_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0551g00040 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 8.4e-74
Identity = 147/244 (60.25%), Postives = 181/244 (74.18%), Query Frame = 1 

Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M +S+G SSLKRKRPD    N++   L+  E+VLYDLI SK+ MGI T DMKRET   ++
Sbjct: 1   MSRSQG-SSLKRKRPDT---NTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDN 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLK+LQ K LIK V + Q+KG+K Y++ +FEP+KELTGG WY +G LD +YI  LK
Sbjct: 61  VVTKSLKALQVKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           + C R++ + K+ T EGI ES  ++G    E S +QI EI+ ALVLDN++MEV+SSG GE
Sbjct: 121 ETCVRVLSKLKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGE 180

Query: 181 FEFIPIGKICYKYCTQGGGL-KGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTK 240
           F  IPIG +CY+ CT  GGL  G P  GAMASIPCGVCPRIT CTP+GIISP TC YYTK
Sbjct: 181 FSSIPIGAVCYR-CTNKGGLGGGGPTIGAMASIPCGVCPRITQCTPDGIISPKTCAYYTK 239

Query: 241 WLDF 244
           WLDF
Sbjct: 241 WLDF 239

[Close]
BLAST of Csa3G043930 vs. TrEMBL
Match: B9IN97_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s04220g PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 8.4e-74
Identity = 136/243 (55.97%), Postives = 185/243 (76.13%), Query Frame = 1 

Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M + +GPSSLKRKRP++   NS   +L   E++LYD+I SKQ +GI T DMK+E K  ++
Sbjct: 1   MSRLQGPSSLKRKRPEV---NSPAQSLTEHERLLYDVIRSKQDIGIWTRDMKKEAKLPDN 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VV KSLK+LQ K LIK V + QNKG+K +++ +FEP+KE++GG WY +G LD ++I +LK
Sbjct: 61  VVNKSLKALQVKKLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           Q+C R I+R+ + T+E + +S     AF V+++++QIEEI+  L+LDN +MEVKS+G GE
Sbjct: 121 QLCKRQIERRGVATLEEVTDSINSYPAFNVDVTKQQIEEILRTLILDNVIMEVKSNGMGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           F  IP G++CYKY ++  GL GEPK GA+ASIPCGVCPRI+ CTP+GIISP TCVYY KW
Sbjct: 181 FASIPFGEVCYKYISK-VGLGGEPKAGALASIPCGVCPRISQCTPDGIISPKTCVYYQKW 239

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 239

[Close]
BLAST of Csa3G043930 vs. TrEMBL
Match: A0A0B2Q204_GLYSO (DNA-directed RNA polymerase III subunit RPC6 OS=Glycine soja GN=glysoja_016081 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 8.4e-74
Identity = 139/243 (57.20%), Postives = 182/243 (74.90%), Query Frame = 1 

Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M   +G SSLKRKR DL       G+L   E+VLY+LI SK+ MGI T DMKRET   +S
Sbjct: 1   MSHLQGSSSLKRKRQDLALVT---GSLTDGERVLYNLIHSKKDMGIWTGDMKRETNLPDS 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           +V KSLK LQ+K LIK V + QNKG+K Y++ +FEP+KE+TGG WY  G LD D+IN +K
Sbjct: 61  IVKKSLKLLQSKNLIKEVVNIQNKGRKHYMAAEFEPSKEITGGVWYNQGRLDTDFINLVK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
            VC + I R+K+ T +G++E  ++SG F VE++ +QI+EI+  LVLD++++EVKS+GFG+
Sbjct: 121 DVCLKYIFRQKVATRDGVMEWSRKSGVFNVEVTTQQIDEILRTLVLDDEIVEVKSTGFGD 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           F  +P+G+ICY+ C   GG +GE K GAMASIPCGVCPRI +CTP+GIISP TCVYY KW
Sbjct: 181 FSSVPVGRICYR-CKSKGGNRGEQKPGAMASIPCGVCPRINFCTPDGIISPRTCVYYQKW 239

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 239

[Close]
BLAST of Csa3G043930 vs. TAIR10
Match: AT5G23710.1 (AT5G23710.1 DNA binding;DNA-directed RNA polymerases)

HSP 1 Score: 205.7 bits (522), Expect = 3.3e-53
Identity = 110/235 (46.81%), Postives = 146/235 (62.13%), Query Frame = 1 

Query: 11  KRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ 70
           KRKRPD   K+S G      EK L DLI   Q  G   F++KRE     ++VT+ + SL+
Sbjct: 3   KRKRPD--PKSSGGDLNEPHEKKLLDLIRINQGRGATMFELKREKTIPATIVTRLIASLR 62

Query: 71  TKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQ-- 130
            K LIK V +  NKG K YL+ +FEP  ELTGG WY DG LD   I  LK  C  +++  
Sbjct: 63  KKNLIKEVANMNNKGVKHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMILERH 122

Query: 131 RKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGK 190
           R++++T+E +   F +    + +LS +Q +EI+  L+LDN +MEVKS+G  EF    IG+
Sbjct: 123 RQRVVTLEVLCGYFVK----EEKLSVDQTKEILKNLILDNLIMEVKSNGMNEFASTRIGE 182

Query: 191 ICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 244
           +CY+   +  G  GEP+ GA ASIPCGVCP I  C+P+G+ISP TCVY+ KWLDF
Sbjct: 183 VCYRLTGKKFG-NGEPRAGAFASIPCGVCPHIAICSPDGVISPTTCVYFQKWLDF 230

[Close]
BLAST of Csa3G043930 vs. NCBI nr
Match: gi|449461094|ref|XP_004148278.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus])

HSP 1 Score: 496.9 bits (1278), Expect = 2.0e-137
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 1 

Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 243

[Close]
BLAST of Csa3G043930 vs. NCBI nr
Match: gi|659096228|ref|XP_008448982.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo])

HSP 1 Score: 491.1 bits (1263), Expect = 1.1e-135
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 1 

Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M KS+GPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MSKSQGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYCTQGGGLKGEPK GAMASIPCGVCPRITYCTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 243

[Close]
BLAST of Csa3G043930 vs. NCBI nr
Match: gi|659078854|ref|XP_008439941.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo])

HSP 1 Score: 473.8 bits (1218), Expect = 1.8e-130
Identity = 234/243 (96.30%), Postives = 238/243 (97.94%), Query Frame = 1 

Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M KS+GPSSLKRKRPDL TKNSS GALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVEL+REQIEEIVNALVLDNQV EVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYC+Q GGLKGEPKTGAMASIPCGVCPRIT+CTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCSQ-GGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKW 240

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 242

[Close]
BLAST of Csa3G043930 vs. NCBI nr
Match: gi|1009182704|ref|XP_015872858.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ziziphus jujuba])

HSP 1 Score: 300.4 bits (768), Expect = 2.8e-78
Identity = 146/243 (60.08%), Postives = 190/243 (78.19%), Query Frame = 1 

Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M + +GP +LKRKRPD    NS   +L  QE++LYD+I SKQ MGI T DMKRET   ++
Sbjct: 1   MSRLQGPLALKRKRPD---SNSPSESLTEQERILYDVIRSKQDMGIWTRDMKRETNLPDN 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VV KSLKSLQ K LIK V + QNKG+K Y++ +FEP+KE++GG WY +G LD ++I+ LK
Sbjct: 61  VVNKSLKSLQAKKLIKEVVNIQNKGRKHYMAAEFEPSKEISGGAWYVEGSLDTEFIDLLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
             CA++I ++++ T+EGI++  +++G FKVE S +QIEEI+ ALVLDN VM+VKS+G GE
Sbjct: 121 DQCAKIIYKQRVATVEGILDVIRRTGIFKVEFSTQQIEEILRALVLDNVVMDVKSNGMGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           F+ IP+GK+CYK CT   G++GEPK GAMASIPCGVCPRI +CTP+GIISP TCVYY KW
Sbjct: 181 FDSIPVGKVCYK-CT-NKGVRGEPKAGAMASIPCGVCPRINHCTPDGIISPTTCVYYNKW 238

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 238

[Close]
BLAST of Csa3G043930 vs. NCBI nr
Match: gi|743918023|ref|XP_011003010.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like isoform X2 [Populus euphratica])

HSP 1 Score: 287.7 bits (735), Expect = 1.9e-74
Identity = 137/243 (56.38%), Postives = 185/243 (76.13%), Query Frame = 1 

Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M + +GPSSLKRKRP++   NS   +L   E++LYD+I SKQ +GI T DMK+E K  ++
Sbjct: 20  MSRLQGPSSLKRKRPEV---NSPAQSLNEHERLLYDVIRSKQDIGIWTRDMKKEAKLPDN 79

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VV KSLK+LQ K LIK V + QNKG+K +++ +FEP+KE++GG WY +G LD ++I +LK
Sbjct: 80  VVNKSLKALQVKKLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLK 139

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           Q+C R I+R  + T+E + +S     AF V+++++QIEEI+  L+LDN +MEVKS+G GE
Sbjct: 140 QLCKRQIERSGVATLEAVTDSINSYPAFNVDVTKQQIEEILRTLILDNVIMEVKSNGMGE 199

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           F  IP G++CYKY ++ GGL GEPK GA+ASIPCGVCPRI+ CTP+GIISP TCVYY KW
Sbjct: 200 FASIPFGEVCYKYVSK-GGLGGEPKAGALASIPCGVCPRISQCTPDGIISPKTCVYYQKW 258

Query: 241 LDF 244
           LDF
Sbjct: 260 LDF 258

The following BLAST results are available for this feature:
BLAST of Csa3G043930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPC6_MOUSE3.3e-2331.03DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus GN=Polr3f PE=1 SV=1[more]
RPC6_BOVIN4.4e-2331.03DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus GN=POLR3F PE=2 SV=1[more]
RPC6_HUMAN7.4e-2331.03DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens GN=POLR3F PE=1 SV=1[more]
RPC6_DICDI2.2e-2227.13DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum GN=polr... [more]
RPC6_DROME1.5e-2027.39Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster... [more]
BLAST of Csa3G043930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5W6_CUCSA1.4e-137100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G043930 PE=4 SV=1[more]
B9GLD0_POPTR2.2e-7455.56Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04090g PE=4 SV=2[more]
F6HD53_VITVI8.4e-7460.25Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0551g00040 PE=4 SV=... [more]
B9IN97_POPTR8.4e-7455.97Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s04220g PE=4 SV=1[more]
A0A0B2Q204_GLYSO8.4e-7457.20DNA-directed RNA polymerase III subunit RPC6 OS=Glycine soja GN=glysoja_016081 P... [more]
BLAST of Csa3G043930 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23710.13.3e-5346.81 DNA binding;DNA-directed RNA polymerases[more]
BLAST of Csa3G043930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449461094|ref|XP_004148278.1|2.0e-137100.00PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus][more]
gi|659096228|ref|XP_008448982.1|1.1e-13598.77PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo][more]
gi|659078854|ref|XP_008439941.1|1.8e-13096.30PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo][more]
gi|1009182704|ref|XP_015872858.1|2.8e-7860.08PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ziziphus jujuba][more]
gi|743918023|ref|XP_011003010.1|1.9e-7456.38PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like isoform X2 [Populus... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007832RNA_pol_Rpc34
IPR011991Winged helix-turn-helix DNA-binding domain
IPR016049RNA_pol_Rpc34-like
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed RNA polymerase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005666DNA-directed RNA polymerase III complex
Vocabulary: Biological Process
TermDefinition
GO:0006359regulation of transcription from RNA polymerase III promoter
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006359 regulation of transcription from RNA polymerase III promoter
biological_process GO:0006383 transcription from RNA polymerase III promoter
cellular_component GO:0005666 DNA-directed RNA polymerase III complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0009507 chloroplast
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0001056 RNA polymerase III activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU128672cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G043930.1Csa3G043930.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU128672CU128672transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007832RNA polymerase Rpc34PFAMPF05158RNA_pol_Rpc34coord: 29..135
score: 4.3
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 30..89
score: 3.
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 30..92
score: 9.38
IPR016049RNA polymerase Rpc34-likePANTHERPTHR12780RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATEDcoord: 1..243
score: 8.2