Csa3G039350 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G039350
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 2907919 .. 2909969 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATCTTCCCCCAAATTGCAAAGGAGGAAACTGCGGAAATATTTTGATAGAAAGACATGAAGTCTGAATGAGATTCTCATCATAAAACCCACGAGAGCAGTTTGCAGAAGGTTTCTTCAAGTGTCAGAATCGTAATAAGAAGGAAGCAGCAAGGGTAAAAGTTCTGACAAACTCCAAAGACCTCTTTTATCGGCCCTGGTTTCGGACTCATTCAATTCCTCGAACTCGGCGTTTAGCTTCTGGTTGGTGGGGGAAAAAAGAAGAACTGGGGAAGAACCCGGCGACGATACTCAGCTCTTTTTTCCCTCTTGTTCTTCCTTCTTCGACCTTCTTCCCCTTTTTAGGACCAACCCCTTTTCCCCATTTTTTTTTGTTTTTCCCCTTTCCCTGTTCAGTCCCCTGCTTTTTTCTTAACGGTTTCACAGACTTCCCCCTTTGGCAGAGCTTGAAACTTCAAGAAATTTCGTTTCTGGGTTTGCGTGCTTTGCTTTCTGTGAAGTGTTACATTCATCTAGTTCCTGTTTTTCCCTTTCCTTTGGAGTATGTTATCACTCTTTTACTGGGTTTTGATTTCTGGGTTCAAATGGGGTTTACCATGCATGTCTAAAATGTGTGATCTTTGCTCTTATAGGACTTCATTGCATTTCTGTCTCTTGGGTTTTGTTGCTTTTTGGTATCATTGGGGGTGGTGAATGTAATGGGTGTTTGTTTTTGAAGTTCATTTTTTTTGTTTGGAAGATCAACTTTTGTTGGCTGTATAGCATGTTGATCATGGAGTTTTGAGGTATTTTGAAAGGAGTTTTAGGTGGCGTTCTTGTTCCAATTGTTAGAATTTGCTCATTATAGTGATTAGTTCATTGAGCTAATGAAAGCAGAACATTTTGCTTGACTGTCGAAGCATTCTTGATTCTATGTTTCTTTACACATCAGCATTCTACAAAGGGAGGGACTTTGTTTGATTCTGTGACATTACGTTGTGTTGCTGATGTATTGCTGCAAAATCGGTGCATGGCACTTTAGTACTTGAGTTAGCAAGTTGGTTTATAAAGAAAGATTTTGTTTTCATGCATTTTGTCTACTTGAAATTTTAACGAATGAGTAAAATATACGATAGTTGAAGGCATAGCAGCTTGTCCGACACATGGCGTACTGATCTTTCTTTCTGTTGAAGACAACTATTTATATCAAGGAGTTTCTGCCTAATAAACATAGCTAATTTTAGCATTCAACTATTTTGTGTCAATATTTTAATTTATAATCGATTGATAATTTTGTGTATTGATTGAGTGCGAATGCATTTTTTGCTGCATTGTAACATTGGATAAAAGTCGCATGCATTTTGCGACCCTTCAACTTCGGGCCTTCTTATTTTGGGGATTTTATTATCAACAATAAGTTTGTGGCACTAGAGCATGCTAGAATGCCTTTTTCTGTTCATAGGATGAATGAAGATTTCAGTGATCTATCTATCCAAAATCTGTTGAACTAAATGTGCTATTGTACTTCATCTACTTTTGTAATGGTAGTTTTACTTATGCTGCTTGGTTTTTGAGCCACACATTTATTTTACTGGTGCCCAGTGTCATTGCTACTTTTAGGCAGGTCATTTCTCTTCAATAAGTTCGAATAACTTGATCTTAACTTATTGTTAGTTGACTTTGTTCAATGGACATATGTTTTCTGTTACTTATTTTGTATTTCATTATTTCATTTATGGTTTTGACATGTTTATGGTAAATGGCAATGCTAATTTTCCAACGTAAGAAACAATGCTCAATGAATTAAGTTAGAGATAATTCCAAGTCTATTCTCTTTTCTTCATTAATAAATATTTTCCTTTTCTTTTCAAAAAGGAAAAAAGATTGAGATATGCCAAAATTAGAAGCACTATTTGTTCTTGATACTCATTGTACACAGATATAGTTAGTATGCCAGTTTTTTCACTCGTAGTTTTTTGGCTTATTGTAGTGAACTGTAAAAGCTTTGAACATTTTGACATTTCATCATGAATATGAATTTGTTGTCTCATTTATTTCTTCAGGTGCTGA

mRNA sequence

ATGTTTGCAGAAGGTTTCTTCAAGTGTCAGAATCGTAATAAGAAGGAAGCAGCAAGGGTAAAAGTTCTGACAAACTCCAAAGACCTCTTTTATCGGCCCTGGTTTCGGACTCATTCAATTCCTCGAACTCGGCGTTTAGCTTCTGGTTGGTGGGGGAAAAAAGAAGAACTGGGGAAGAACCCGGCGACGATACTCAGCTCTTTTTTCCCTCTTGTTCTTCCTTCTTCGACCTTCTTCCCCTTTTTAGGACCAACCCCTTTTCCCCATTTTTTTTTGTTTTTCCCCTTTCCCTGTTCAGTCCCCTGCTTTTTTCTTAACGGTTTCACAGACTTCCCCCTTTGGCAGAGCTTGAAACTTCAAGAAATTTCGTTTCTGGGTTTGCGTGCTTTGCTTTCTGTGAAGTGTTACATTCATCTAGTTCCTGTTTTTCCCTTTCCTTTGGAGTGCTGA

Coding sequence (CDS)

ATGTTTGCAGAAGGTTTCTTCAAGTGTCAGAATCGTAATAAGAAGGAAGCAGCAAGGGTAAAAGTTCTGACAAACTCCAAAGACCTCTTTTATCGGCCCTGGTTTCGGACTCATTCAATTCCTCGAACTCGGCGTTTAGCTTCTGGTTGGTGGGGGAAAAAAGAAGAACTGGGGAAGAACCCGGCGACGATACTCAGCTCTTTTTTCCCTCTTGTTCTTCCTTCTTCGACCTTCTTCCCCTTTTTAGGACCAACCCCTTTTCCCCATTTTTTTTTGTTTTTCCCCTTTCCCTGTTCAGTCCCCTGCTTTTTTCTTAACGGTTTCACAGACTTCCCCCTTTGGCAGAGCTTGAAACTTCAAGAAATTTCGTTTCTGGGTTTGCGTGCTTTGCTTTCTGTGAAGTGTTACATTCATCTAGTTCCTGTTTTTCCCTTTCCTTTGGAGTGCTGA

Protein sequence

MFAEGFFKCQNRNKKEAARVKVLTNSKDLFYRPWFRTHSIPRTRRLASGWWGKKEELGKNPATILSSFFPLVLPSSTFFPFLGPTPFPHFFLFFPFPCSVPCFFLNGFTDFPLWQSLKLQEISFLGLRALLSVKCYIHLVPVFPFPLEC*
Homology
[Close]
BLAST of Csa3G039350 vs. TrEMBL
Match: A0A0A0L4K3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G039350 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 3.8e-85
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 1   MFAEGFFKCQNRNKKEAARVKVLTNSKDLFYRPWFRTHSIPRTRRLASGWWGKKEELGKN 60
           MFAEGFFKCQNRNKKEAARVKVLTNSKDLFYRPWFRTHSIPRTRRLASGWWGKKEELGKN
Sbjct: 1   MFAEGFFKCQNRNKKEAARVKVLTNSKDLFYRPWFRTHSIPRTRRLASGWWGKKEELGKN 60

Query: 61  PATILSSFFPLVLPSSTFFPFLGPTPFPHFFLFFPFPCSVPCFFLNGFTDFPLWQSLKLQ 120
           PATILSSFFPLVLPSSTFFPFLGPTPFPHFFLFFPFPCSVPCFFLNGFTDFPLWQSLKLQ
Sbjct: 61  PATILSSFFPLVLPSSTFFPFLGPTPFPHFFLFFPFPCSVPCFFLNGFTDFPLWQSLKLQ 120

Query: 121 EISFLGLRALLSVKCYIHLVPVFPFPLEC 150
           EISFLGLRALLSVKCYIHLVPVFPFPLEC
Sbjct: 121 EISFLGLRALLSVKCYIHLVPVFPFPLEC 149

[Close]
BLAST of Csa3G039350 vs. NCBI nr
Match: gi|700200831|gb|KGN55964.1| (hypothetical protein Csa_3G039350 [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 5.5e-85
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 1   MFAEGFFKCQNRNKKEAARVKVLTNSKDLFYRPWFRTHSIPRTRRLASGWWGKKEELGKN 60
           MFAEGFFKCQNRNKKEAARVKVLTNSKDLFYRPWFRTHSIPRTRRLASGWWGKKEELGKN
Sbjct: 1   MFAEGFFKCQNRNKKEAARVKVLTNSKDLFYRPWFRTHSIPRTRRLASGWWGKKEELGKN 60

Query: 61  PATILSSFFPLVLPSSTFFPFLGPTPFPHFFLFFPFPCSVPCFFLNGFTDFPLWQSLKLQ 120
           PATILSSFFPLVLPSSTFFPFLGPTPFPHFFLFFPFPCSVPCFFLNGFTDFPLWQSLKLQ
Sbjct: 61  PATILSSFFPLVLPSSTFFPFLGPTPFPHFFLFFPFPCSVPCFFLNGFTDFPLWQSLKLQ 120

Query: 121 EISFLGLRALLSVKCYIHLVPVFPFPLEC 150
           EISFLGLRALLSVKCYIHLVPVFPFPLEC
Sbjct: 121 EISFLGLRALLSVKCYIHLVPVFPFPLEC 149

The following BLAST results are available for this feature:
BLAST of Csa3G039350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4K3_CUCSA3.8e-85100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G039350 PE=4 SV=1[more]
BLAST of Csa3G039350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200831|gb|KGN55964.1|5.5e-85100.00hypothetical protein Csa_3G039350 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G039350.1Csa3G039350.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G039350Melon (DHL92) v3.5.1cumeB243
Csa3G039350Watermelon (Charleston Gray)cuwcgB189
Csa3G039350Watermelon (97103) v1cuwmB201
Csa3G039350Cucurbita pepo (Zucchini)cpecuB213
Csa3G039350Cucurbita pepo (Zucchini)cpecuB850
Csa3G039350Bottle gourd (USVL1VR-Ls)culsiB228
Csa3G039350Cucumber (Gy14) v2cgybcuB109
Csa3G039350Melon (DHL92) v3.6.1cumedB224
Csa3G039350Silver-seed gourdcarcuB0014
Csa3G039350Silver-seed gourdcarcuB0881
Csa3G039350Watermelon (97103) v2cuwmbB181
Csa3G039350Wax gourdcuwgoB218
Csa3G039350Cucumber (Gy14) v1cgycuB014
Csa3G039350Cucurbita maxima (Rimu)cmacuB327
Csa3G039350Cucurbita maxima (Rimu)cmacuB825
Csa3G039350Cucurbita moschata (Rifu)cmocuB315
Csa3G039350Cucurbita moschata (Rifu)cmocuB815