Csa3G036500 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G036500
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionGeneral transcription factor IIH subunit; contains IPR009400 (TFIIH subunit TTDA/Tfb5)
LocationChr3 : 2600647 .. 2603064 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTTGACCTTTTTAATCCATACATAATCTATGATTTTAGACCATGTGTAAATAGATTTTAAAATGAAATATACTGCAAGCAAAATGACACTGTTAAGAGAAGAAACAAAAGGTAAAGAAAAGGTCTTCCAATAACCTCTTCCCGTCGGCCACACTCTCTCGCTCGATCGCACAGCAAGGCCATTCCCCCATCTCCGATCGTTCTGCCGCCGTCCGGCCTGCCAGTCGTGTACAACCGCCAGCGGTTCGCCGGAGATAAGGTTTCTTTCTCATTCTCTCTCTCACTGCCCTCTCTCTCATCATTTTTCGAGCTTCAATTGAAAATGATCTATTGTCTTCCAATTTTCAATCGGCACTACGACAATAGGTTTCTTTTCATTCCCTAACCCTAGAATATATTTATCAGCCATGAAATGATTAATCTGAAAAATTGACCTTGGAGAATGCTTCTCTACTGCCGTCTTTATTAAGAATGAGAAGAAATTAAAGTTTCATAAGTTTCCAAGGAAGATGATTTAGAACACTTAAACTAGAAATCTCTTCTATAACGAGGGTTGCCTTAGAAACTTGAAGTTTCTTCTCATATTTCTTAAGATCTTTTTTCATAGACTAGAAAGGGAGCCAGCCTCGTTTATTGATTAATCACTTGAAATTGGAATGTAGGGACTGAGTTTCAGTTAAATTTGTTCTGCTGCTGTTTGAGAGACGGCGTTTTTGACATCATGGTTAATGCTATTAAAGGGATGTTCATCTCCTGGTAAAATACCTTCTTCTACCTTACTTAAAAGATAGATATCTATTTTGGGTGTACTTTCTTCTGTTTGATTATGGAATTTTGTTTTCTTCTGTTAGTTGTTTCGTTGATCTCTTTGGAATTGCTATGATATTTGAATGACGCAGCTTCTACGAGACTAGAGACTTCAATTGCGATATTGTTTATTATTTCTCTTGTTTGGTTATGTTCTTTTCTTCAGTTTTTCTTCCCCTTTCCCTGTTTTTCTTTATGATCTCTACTGATTACTGGAATAGAGTGTGTGATTATTATGACAGTTTAAATGGTGGAAATTCTTAGAATTCTTAGAAATTTCACTGCGAATTTACTAATACTTGGGGGGCTATAAGATTCTTCTTTCCTTCTTTTTCCCAAGTACTTGTTGGATGATAATCTCTTGTCTTTGGACTTGGTATGACAATCGAAATGGCATCACTTTTAAAAGACTTCAAACTTGCATTGTGATCTTGTTTGGTTACTTGGGATTTTGTTGGTCTTTCTTTTTCTCTCTGTTTTTTAAATGATTGTCTCTAAATGTTGGGATAGAGTTCGGCATGGAGTGGAGTTGTTTAATTGTGGATATGAAATCAATGTTTTTTAGTTGTGGGAACCTTAGTGGGTCAGGGTCTAAGAACTCATTAAGCCAAACAAGAAGCAGAACTAGCAACTCCATTCCCCCAACTCTGACCCCTTGGGTCAAACCTGCCTTTATGTGATTATTATGTCATTCTAAAGGAAAGCTTTGATGATGTCTACCAATACTTGGGGTCATGTTCTCTTCTTCTCTCTACCCCTGCCCCTCCTCAGTCATTGCTGGATGATCTCTTTTGAACACTATGATAGGCCTTTAGAATTAGTACGACAATCAAAATGACAACACTTTTAGAGGACTCAAAATTTTGTGATAGTTCTTTTTTTTTCTCCCTGTTTTCTTGATGATTATATTCTCTTCTAAACATTGGGATGTTGATATGACTTTTGAGTTATTGTTTCTTATTCAAATAATGAGGCACAATGACCTTGGCAGTTATCCAATTCACAATGATGTGGTAGAATTTGTTATTAGCAGCAGTTCATATAGCTTGAAATATCTTTGTATGTTCTATCATATACCATTTGTGAACGGTAAATGATTTCTGATATGCATTTGATGTTGCCTTTCTTTTCCATCTTGAATTTGCAACTTTTGGCATAATTTCTTGCTTTTCAGGATGAATAAAATTATTGGCATTTTCTTGTGTTGAGATAAATTAATTTCTTCCTTTATGCAGTGACATACCTATGGCACAATTTATCATCAATTACAATGCTTCCTTGCCTGCATCCCATAGATTTATCATCCATATACTGGATAACACTCACATGTTTGTGCAACCACACGTAGCTGACATGATTCGGAACGCCATCTCGGAATTTCGAGAACAGATTTCTTATGAGAAACCTACTTGAACAATGTTGGTAATCAAAGTTTCACTATATAATTGTATTTTTTTAGATTTTTTGAGGTTATAGATTTTACTTATAAAATTTATTGTGCATTCAAAGAGTTTTACATTGTATTGATGTCTCTCCACTATGCAATGTATCTCATCTGATTTGAAGATCTAGAATGGCAGAGACTAGTTATTTTTAAGGTTCAGTTAGA

mRNA sequence

ATGGTTAATGCTATTAAAGGGATGTTCATCTCCTGTGACATACCTATGGCACAATTTATCATCAATTACAATGCTTCCTTGCCTGCATCCCATAGATTTATCATCCATATACTGGATAACACTCACATGTTTGTGCAACCACACGTAGCTGACATGATTCGGAACGCCATCTCGGAATTTCGAGAACAGATTTCTTATGAGAAACCTACTTGA

Coding sequence (CDS)

ATGGTTAATGCTATTAAAGGGATGTTCATCTCCTGTGACATACCTATGGCACAATTTATCATCAATTACAATGCTTCCTTGCCTGCATCCCATAGATTTATCATCCATATACTGGATAACACTCACATGTTTGTGCAACCACACGTAGCTGACATGATTCGGAACGCCATCTCGGAATTTCGAGAACAGATTTCTTATGAGAAACCTACTTGA

Protein sequence

MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFREQISYEKPT*
Homology
[Close]
BLAST of Csa3G036500 vs. Swiss-Prot
Match: TFB5_ARATH (RNA polymerase II transcription factor B subunit 5 OS=Arabidopsis thaliana GN=TFB5 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.1e-25
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 1 

Query: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKG+F+SCDIPM QFI+N N S+P S +FIIH+LD+TH+FVQPHV  MIR+AIS+F
Sbjct: 1  MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60

Query: 61 REQISYEKPT 71
          R+Q SYEKPT
Sbjct: 61 RDQNSYEKPT 70

[Close]
BLAST of Csa3G036500 vs. Swiss-Prot
Match: TF2H5_CHICK (General transcription factor IIH subunit 5 OS=Gallus gallus GN=GTF2H5 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.4e-06
Identity = 24/66 (36.36%), Postives = 36/66 (54.55%), Query Frame = 1 

Query: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVN +KG+ I CD  M QF++  + S     +FII  LD TH+FV   + + ++  + E 
Sbjct: 1  MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDLDETHVFVLAELVNFLQERVGEL 60

Query: 61 REQISY 67
           +Q S+
Sbjct: 61 MDQNSF 66

[Close]
BLAST of Csa3G036500 vs. Swiss-Prot
Match: TF2H5_BOVIN (General transcription factor IIH subunit 5 OS=Bos taurus GN=GTF2H5 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.0e-06
Identity = 22/66 (33.33%), Postives = 38/66 (57.58%), Query Frame = 1 

Query: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVN +KG+ I CD  M QF++  + S     +FII  +D+TH+FV   + ++++  + E 
Sbjct: 1  MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60

Query: 61 REQISY 67
           +Q ++
Sbjct: 61 MDQNAF 66

[Close]
BLAST of Csa3G036500 vs. Swiss-Prot
Match: TF2H5_HUMAN (General transcription factor IIH subunit 5 OS=Homo sapiens GN=GTF2H5 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.0e-06
Identity = 22/66 (33.33%), Postives = 38/66 (57.58%), Query Frame = 1 

Query: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVN +KG+ I CD  M QF++  + S     +FII  +D+TH+FV   + ++++  + E 
Sbjct: 1  MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60

Query: 61 REQISY 67
           +Q ++
Sbjct: 61 MDQNAF 66

[Close]
BLAST of Csa3G036500 vs. TrEMBL
Match: A0A0A0L4F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G036500 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.0e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF
Sbjct: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 61 REQISYEKPT 71
          REQISYEKPT
Sbjct: 61 REQISYEKPT 70

[Close]
BLAST of Csa3G036500 vs. TrEMBL
Match: A0A059C1G8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00483 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-27
Identity = 59/70 (84.29%), Postives = 67/70 (95.71%), Query Frame = 1 

Query: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNA KG+FISCDIPMAQFIIN+NASLPAS +FIIH+LDNTH+FVQPH+ADM+RNAI+EF
Sbjct: 1  MVNATKGLFISCDIPMAQFIINFNASLPASQKFIIHVLDNTHLFVQPHMADMLRNAIAEF 60

Query: 61 REQISYEKPT 71
          REQ SYEKPT
Sbjct: 61 REQNSYEKPT 70

[Close]
BLAST of Csa3G036500 vs. TrEMBL
Match: B9N3L1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08090g PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.5e-26
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = 1 

Query: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNA KG+FISCDIPMAQFIIN NASLPAS +FIIHILD+THMFVQPHV+DMIR+AIS+F
Sbjct: 1  MVNATKGLFISCDIPMAQFIINLNASLPASQKFIIHILDSTHMFVQPHVSDMIRSAISDF 60

Query: 61 REQISYEKPT 71
          REQ SYEKP+
Sbjct: 61 REQNSYEKPS 70

[Close]
BLAST of Csa3G036500 vs. TrEMBL
Match: D7TWE3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g05150 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-25
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 1 

Query: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNA KG+FISCDIPMAQFIIN NAS+PAS +FIIH+LD+TH+FVQPHVA+MIR+AISEF
Sbjct: 1  MVNATKGLFISCDIPMAQFIINMNASMPASQKFIIHVLDSTHLFVQPHVAEMIRSAISEF 60

Query: 61 REQISYEKP 70
          REQ SYEKP
Sbjct: 61 REQNSYEKP 69

[Close]
BLAST of Csa3G036500 vs. TrEMBL
Match: A0A0D9ZT96_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-25
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = 1 

Query: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKG+FISCD+PMAQFI+N NAS+PAS +FI+H+LD THMFVQPHVADMIR+ ISEF
Sbjct: 1  MVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVADMIRSKISEF 60

Query: 61 REQISYEKPT 71
          R+Q SYEKPT
Sbjct: 61 RDQNSYEKPT 70

[Close]
BLAST of Csa3G036500 vs. TAIR10
Match: AT1G12400.1 (AT1G12400.1 Nucleotide excision repair, TFIIH, subunit TTDA)

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-26
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 1 

Query: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKG+F+SCDIPM QFI+N N S+P S +FIIH+LD+TH+FVQPHV  MIR+AIS+F
Sbjct: 1  MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60

Query: 61 REQISYEKPT 71
          R+Q SYEKPT
Sbjct: 61 RDQNSYEKPT 70

[Close]
BLAST of Csa3G036500 vs. TAIR10
Match: AT1G62886.1 (AT1G62886.1 Nucleotide excision repair, TFIIH, subunit TTDA)

HSP 1 Score: 87.4 bits (215), Expect = 3.8e-18
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1 

Query: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHI--LDNTHMFVQPHVADMIRNAIS 60
          MVN+IKG+FISCD+PMAQFI + N SLPAS +FII +  LD T MFV+P+  +MIR+A+ 
Sbjct: 1  MVNSIKGVFISCDVPMAQFIAHLNNSLPASQKFIIQVLKLDTTSMFVKPYAEEMIRDAVI 60

Query: 61 EFREQISYEK 69
          +FR++ SY K
Sbjct: 61 KFRDENSYAK 70

[Close]
BLAST of Csa3G036500 vs. NCBI nr
Match: gi|449460439|ref|XP_004147953.1| (PREDICTED: uncharacterized protein LOC101204877 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 4.3e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF
Sbjct: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 61 REQISYEKPT 71
          REQISYEKPT
Sbjct: 61 REQISYEKPT 70

[Close]
BLAST of Csa3G036500 vs. NCBI nr
Match: gi|659096083|ref|XP_008448918.1| (PREDICTED: general transcription factor IIH subunit 5 [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-31
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKGMFISCD+PMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF
Sbjct: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 61 REQISYEKPT 71
          R+QISYEKPT
Sbjct: 61 RDQISYEKPT 70

[Close]
BLAST of Csa3G036500 vs. NCBI nr
Match: gi|702336459|ref|XP_010055551.1| (PREDICTED: uncharacterized protein LOC104443736 [Eucalyptus grandis])

HSP 1 Score: 129.0 bits (323), Expect = 3.2e-27
Identity = 59/70 (84.29%), Postives = 67/70 (95.71%), Query Frame = 1 

Query: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNA KG+FISCDIPMAQFIIN+NASLPAS +FIIH+LDNTH+FVQPH+ADM+RNAI+EF
Sbjct: 1  MVNATKGLFISCDIPMAQFIINFNASLPASQKFIIHVLDNTHLFVQPHMADMLRNAIAEF 60

Query: 61 REQISYEKPT 71
          REQ SYEKPT
Sbjct: 61 REQNSYEKPT 70

[Close]
BLAST of Csa3G036500 vs. NCBI nr
Match: gi|694392126|ref|XP_009371553.1| (PREDICTED: general transcription factor IIH subunit 5-like [Pyrus x bretschneideri])

HSP 1 Score: 124.8 bits (312), Expect = 6.1e-26
Identity = 57/70 (81.43%), Postives = 66/70 (94.29%), Query Frame = 1 

Query: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNA+KG+FISCDIPMAQFIINY+ SLPAS RFIIH+LD+TH+FVQPH A+MIRNAI+EF
Sbjct: 1  MVNAVKGLFISCDIPMAQFIINYDNSLPASQRFIIHVLDSTHLFVQPHAAEMIRNAIAEF 60

Query: 61 REQISYEKPT 71
          R+Q SYEKPT
Sbjct: 61 RDQNSYEKPT 70

[Close]
BLAST of Csa3G036500 vs. NCBI nr
Match: gi|566147873|ref|XP_006368720.1| (hypothetical protein POPTR_0001s08090g [Populus trichocarpa])

HSP 1 Score: 124.4 bits (311), Expect = 7.9e-26
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = 1 

Query: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNA KG+FISCDIPMAQFIIN NASLPAS +FIIHILD+THMFVQPHV+DMIR+AIS+F
Sbjct: 1  MVNATKGLFISCDIPMAQFIINLNASLPASQKFIIHILDSTHMFVQPHVSDMIRSAISDF 60

Query: 61 REQISYEKPT 71
          REQ SYEKP+
Sbjct: 61 REQNSYEKPS 70

The following BLAST results are available for this feature:
BLAST of Csa3G036500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TFB5_ARATH5.1e-2572.86RNA polymerase II transcription factor B subunit 5 OS=Arabidopsis thaliana GN=TF... [more]
TF2H5_CHICK2.4e-0636.36General transcription factor IIH subunit 5 OS=Gallus gallus GN=GTF2H5 PE=3 SV=1[more]
TF2H5_BOVIN7.0e-0633.33General transcription factor IIH subunit 5 OS=Bos taurus GN=GTF2H5 PE=3 SV=1[more]
TF2H5_HUMAN7.0e-0633.33General transcription factor IIH subunit 5 OS=Homo sapiens GN=GTF2H5 PE=1 SV=1[more]
BLAST of Csa3G036500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4F5_CUCSA3.0e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G036500 PE=4 SV=1[more]
A0A059C1G8_EUCGR2.2e-2784.29Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00483 PE=4 SV=1[more]
B9N3L1_POPTR5.5e-2684.29Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08090g PE=4 SV=1[more]
D7TWE3_VITVI2.1e-2582.61Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g05150 PE=4 SV=... [more]
A0A0D9ZT96_9ORYZ2.7e-2580.00Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1[more]
BLAST of Csa3G036500 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G12400.12.9e-2672.86 Nucleotide excision repair, TFIIH, subunit TTDA[more]
AT1G62886.13.8e-1860.00 Nucleotide excision repair, TFIIH, subunit TTDA[more]
BLAST of Csa3G036500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449460439|ref|XP_004147953.1|4.3e-32100.00PREDICTED: uncharacterized protein LOC101204877 [Cucumis sativus][more]
gi|659096083|ref|XP_008448918.1|1.3e-3197.14PREDICTED: general transcription factor IIH subunit 5 [Cucumis melo][more]
gi|702336459|ref|XP_010055551.1|3.2e-2784.29PREDICTED: uncharacterized protein LOC104443736 [Eucalyptus grandis][more]
gi|694392126|ref|XP_009371553.1|6.1e-2681.43PREDICTED: general transcription factor IIH subunit 5-like [Pyrus x bretschneide... [more]
gi|566147873|ref|XP_006368720.1|7.9e-2684.29hypothetical protein POPTR_0001s08090g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009400TFIIH_TTDA/Tfb5
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006289nucleotide-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0000439core TFIIH complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045454 cell redox homeostasis
cellular_component GO:0000439 core TFIIH complex
cellular_component GO:0005623 cell
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU131402cucumber EST collection version 3.0transcribed_cluster
CU167013cucumber EST collection version 3.0transcribed_cluster
CU167997cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G036500.1Csa3G036500.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU131402CU131402transcribed_cluster
CU167013CU167013transcribed_cluster
CU167997CU167997transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009400TFIIH subunit TTDA/Tfb5GENE3DG3DSA:3.30.70.1220coord: 1..68
score: 1.2
IPR009400TFIIH subunit TTDA/Tfb5PFAMPF06331Tfb5coord: 1..67
score: 2.0
IPR009400TFIIH subunit TTDA/Tfb5SMARTSM01395Tbf5_2coord: 1..68
score: 1.8
IPR009400TFIIH subunit TTDA/Tfb5unknownSSF142897TFB5-likecoord: 6..69
score: 7.98
NoneNo IPR availablePANTHERPTHR28580FAMILY NOT NAMEDcoord: 1..69
score: 6.0
NoneNo IPR availablePANTHERPTHR28580:SF1GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5coord: 1..69
score: 6.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G036500MELO3C013993Melon (DHL92) v3.5.1cumeB243
Csa3G036500MELO3C013994.2Melon (DHL92) v3.6.1cumedB224
Csa3G036500Cucsa.320370Cucumber (Gy14) v1cgycuB458
Csa3G036500CmaCh06G007470Cucurbita maxima (Rimu)cmacuB825
Csa3G036500CmoCh06G007710Cucurbita moschata (Rifu)cmocuB815
Csa3G036500Cp4.1LG08g07700Cucurbita pepo (Zucchini)cpecuB850
Csa3G036500CsGy3G003180Cucumber (Gy14) v2cgybcuB109
Csa3G036500Carg21613Silver-seed gourdcarcuB0881
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G036500Cucurbita moschata (Rifu)cmocuB268
Csa3G036500Cucurbita moschata (Rifu)cmocuB315
Csa3G036500Melon (DHL92) v3.5.1cumeB171
Csa3G036500Watermelon (Charleston Gray)cuwcgB189
Csa3G036500Watermelon (Charleston Gray)cuwcgB207
Csa3G036500Watermelon (97103) v1cuwmB195
Csa3G036500Watermelon (97103) v1cuwmB263
Csa3G036500Cucurbita pepo (Zucchini)cpecuB169
Csa3G036500Cucurbita pepo (Zucchini)cpecuB213
Csa3G036500Bottle gourd (USVL1VR-Ls)culsiB155
Csa3G036500Bottle gourd (USVL1VR-Ls)culsiB228
Csa3G036500Cucumber (Gy14) v2cgybcuB211
Csa3G036500Melon (DHL92) v3.6.1cumedB153
Csa3G036500Silver-seed gourdcarcuB0878
Csa3G036500Silver-seed gourdcarcuB0953
Csa3G036500Watermelon (97103) v2cuwmbB177
Csa3G036500Watermelon (97103) v2cuwmbB181
Csa3G036500Wax gourdcuwgoB257
Csa3G036500Wax gourdcuwgoB268
Csa3G036500Cucumber (Chinese Long) v2cucuB100
Csa3G036500Cucumber (Gy14) v1cgycuB429
Csa3G036500Cucurbita maxima (Rimu)cmacuB281
Csa3G036500Cucurbita maxima (Rimu)cmacuB327