Csa3G011060 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G011060
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 1125464 .. 1125688 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTCTCACGGACATGAAGGACGTGACAGTGGATATGGAAGTGGTGGAGGAGTTAGCGGAGGCTATGGCAATGGAGGAGTTCATGGAGGGGAGCATGATAATAGCAAAGGAAGTGGAGAAGAAGGGGGTAATGATGGTGGATATGCTGTCAAAAATTCCATCTCAAACAAGAATTGAGAACTCTCTTTTAAGCAATGAACCCAATATCATATTATGTTAA

mRNA sequence

ATGGAGATTCTCACGGACATGAAGGACGTGACAGTGGATATGGAAGTGGTGGAGGAGTTAGCGGAGGCTATGGCAATGGAGGAGTTCATGGAGGGGAGCATGATAATAGCAAAGGAAGTGGAGAAGAAGGGGGTAATGATGGTGGATATGCTGTCAAAAATTCCATCTCAAACAAGAATTGAGAACTCTCTTTTAAGCAATGAACCCAATATCATATTATGTTAA

Coding sequence (CDS)

ATGGAGATTCTCACGGACATGAAGGACGTGACAGTGGATATGGAAGTGGTGGAGGAGTTAGCGGAGGCTATGGCAATGGAGGAGTTCATGGAGGGGAGCATGATAATAGCAAAGGAAGTGGAGAAGAAGGGGGTAATGATGGTGGATATGCTGTCAAAAATTCCATCTCAAACAAGAATTGAGAACTCTCTTTTAAGCAATGAACCCAATATCATATTATGTTAA

Protein sequence

MEILTDMKDVTVDMEVVEELAEAMAMEEFMEGSMIIAKEVEKKGVMMVDMLSKIPSQTRIENSLLSNEPNIILC*
Homology
[Close]
BLAST of Csa3G011060 vs. TrEMBL
Match: A0A0A0L565_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G011060 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.6e-31
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MEILTDMKDVTVDMEVVEELAEAMAMEEFMEGSMIIAKEVEKKGVMMVDMLSKIPSQTRI 60
          MEILTDMKDVTVDMEVVEELAEAMAMEEFMEGSMIIAKEVEKKGVMMVDMLSKIPSQTRI
Sbjct: 1  MEILTDMKDVTVDMEVVEELAEAMAMEEFMEGSMIIAKEVEKKGVMMVDMLSKIPSQTRI 60

Query: 61 ENSLLSNEPNIILC 75
          ENSLLSNEPNIILC
Sbjct: 61 ENSLLSNEPNIILC 74

[Close]
BLAST of Csa3G011060 vs. TrEMBL
Match: A0A0A0L6H2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G010060 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-11
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 1 

Query: 23  AMAMEEFMEGSMIIAKEVEKKGVMMVDMLSKIPSQTRIEN-SLLSNEPNIILC 75
           A+  E +ME SMIIAKEVEKKGVMMVDMLSKI SQ RIEN S  SNEPNIILC
Sbjct: 244 ALRPEAYMEESMIIAKEVEKKGVMMVDMLSKILSQRRIENSSFSSNEPNIILC 296

[Close]
BLAST of Csa3G011060 vs. TrEMBL
Match: A0A0A0L190_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G010050 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.2e-08
Identity = 34/42 (80.95%), Postives = 35/42 (83.33%), Query Frame = 1 

Query: 33  SMIIAKEVEKKGVMMVDMLSKIPSQTRIENSLLSNEPNIILC 75
           S + AKEVEKKGV  VDMLSKIPSQ RIENS  SNEPNIILC
Sbjct: 73  SALGAKEVEKKGVGTVDMLSKIPSQRRIENSFSSNEPNIILC 114

[Close]
BLAST of Csa3G011060 vs. NCBI nr
Match: gi|700200619|gb|KGN55752.1| (hypothetical protein Csa_3G011060 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-31
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MEILTDMKDVTVDMEVVEELAEAMAMEEFMEGSMIIAKEVEKKGVMMVDMLSKIPSQTRI 60
          MEILTDMKDVTVDMEVVEELAEAMAMEEFMEGSMIIAKEVEKKGVMMVDMLSKIPSQTRI
Sbjct: 1  MEILTDMKDVTVDMEVVEELAEAMAMEEFMEGSMIIAKEVEKKGVMMVDMLSKIPSQTRI 60

Query: 61 ENSLLSNEPNIILC 75
          ENSLLSNEPNIILC
Sbjct: 61 ENSLLSNEPNIILC 74

[Close]
BLAST of Csa3G011060 vs. NCBI nr
Match: gi|700200618|gb|KGN55751.1| (hypothetical protein Csa_3G010060 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 4.5e-11
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 1 

Query: 23  AMAMEEFMEGSMIIAKEVEKKGVMMVDMLSKIPSQTRIEN-SLLSNEPNIILC 75
           A+  E +ME SMIIAKEVEKKGVMMVDMLSKI SQ RIEN S  SNEPNIILC
Sbjct: 244 ALRPEAYMEESMIIAKEVEKKGVMMVDMLSKILSQRRIENSSFSSNEPNIILC 296

[Close]
BLAST of Csa3G011060 vs. NCBI nr
Match: gi|700200617|gb|KGN55750.1| (hypothetical protein Csa_3G010050 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 4.6e-08
Identity = 34/42 (80.95%), Postives = 35/42 (83.33%), Query Frame = 1 

Query: 33  SMIIAKEVEKKGVMMVDMLSKIPSQTRIENSLLSNEPNIILC 75
           S + AKEVEKKGV  VDMLSKIPSQ RIENS  SNEPNIILC
Sbjct: 73  SALGAKEVEKKGVGTVDMLSKIPSQRRIENSFSSNEPNIILC 114

[Close]
BLAST of Csa3G011060 vs. NCBI nr
Match: gi|778688292|ref|XP_011652711.1| (PREDICTED: stress protein DDR48-like [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-07
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 1 

Query: 23  AMAMEEFMEGSMIIAKEVEKKGVMMVDMLSKIPSQTRIENSLLS 67
           A+  E +ME SMIIAKEVEKKGVMMVDMLSKI SQ RIENS  S
Sbjct: 305 ALRPEAYMEESMIIAKEVEKKGVMMVDMLSKILSQRRIENSSFS 348

The following BLAST results are available for this feature:
BLAST of Csa3G011060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L565_CUCSA1.6e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G011060 PE=4 SV=1[more]
A0A0A0L6H2_CUCSA3.1e-1179.25Uncharacterized protein OS=Cucumis sativus GN=Csa_3G010060 PE=4 SV=1[more]
A0A0A0L190_CUCSA3.2e-0880.95Uncharacterized protein OS=Cucumis sativus GN=Csa_3G010050 PE=4 SV=1[more]
BLAST of Csa3G011060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200619|gb|KGN55752.1|2.3e-31100.00hypothetical protein Csa_3G011060 [Cucumis sativus][more]
gi|700200618|gb|KGN55751.1|4.5e-1179.25hypothetical protein Csa_3G010060 [Cucumis sativus][more]
gi|700200617|gb|KGN55750.1|4.6e-0880.95hypothetical protein Csa_3G010050 [Cucumis sativus][more]
gi|778688292|ref|XP_011652711.1|3.0e-0777.27PREDICTED: stress protein DDR48-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G011060.1Csa3G011060.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G011060Watermelon (97103) v1cuwmB181
Csa3G011060Watermelon (97103) v1cuwmB200
Csa3G011060Cucurbita pepo (Zucchini)cpecuB212
Csa3G011060Cucurbita pepo (Zucchini)cpecuB241
Csa3G011060Cucurbita pepo (Zucchini)cpecuB718
Csa3G011060Cucurbita pepo (Zucchini)cpecuB863
Csa3G011060Bottle gourd (USVL1VR-Ls)culsiB148
Csa3G011060Bottle gourd (USVL1VR-Ls)culsiB228
Csa3G011060Cucumber (Gy14) v2cgybcuB109
Csa3G011060Cucumber (Gy14) v2cgybcuB113
Csa3G011060Melon (DHL92) v3.6.1cumedB212
Csa3G011060Melon (DHL92) v3.6.1cumedB224
Csa3G011060Silver-seed gourdcarcuB0526
Csa3G011060Silver-seed gourdcarcuB0798
Csa3G011060Silver-seed gourdcarcuB0978
Csa3G011060Silver-seed gourdcarcuB0984
Csa3G011060Watermelon (97103) v2cuwmbB181
Csa3G011060Watermelon (97103) v2cuwmbB253
Csa3G011060Wax gourdcuwgoB237
Csa3G011060Wax gourdcuwgoB305
Csa3G011060Cucumber (Chinese Long) v2cucuB086
Csa3G011060Cucumber (Gy14) v1cgycuB451
Csa3G011060Cucumber (Gy14) v1cgycuB458
Csa3G011060Cucurbita maxima (Rimu)cmacuB326
Csa3G011060Cucurbita maxima (Rimu)cmacuB512
Csa3G011060Cucurbita maxima (Rimu)cmacuB602
Csa3G011060Cucurbita maxima (Rimu)cmacuB817
Csa3G011060Cucurbita moschata (Rifu)cmocuB316
Csa3G011060Cucurbita moschata (Rifu)cmocuB503
Csa3G011060Cucurbita moschata (Rifu)cmocuB592
Csa3G011060Cucurbita moschata (Rifu)cmocuB809
Csa3G011060Melon (DHL92) v3.5.1cumeB227
Csa3G011060Melon (DHL92) v3.5.1cumeB243
Csa3G011060Watermelon (Charleston Gray)cuwcgB189
Csa3G011060Watermelon (Charleston Gray)cuwcgB176