Csa3G002460 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G002460
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein; contains IPR000864 (Proteinase inhibitor I13, potato inhibitor I)
LocationChr3 : 318463 .. 318787 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGTCACACGAAATGCCACCCGGTATGCTTATCGTATTACTTTAATTTTTGTTTAAAAACCGTAATTTCATAACGATATCAAATTGTGAATATGTGTATAATAACAGGAGCGAAAACAGAATGGCCAGAGCTTGTGGGTAGAGATGCAAACGAAGCTGAGTTTATTATAGTGAAGGAAAATCCTTTTACCTTACCTTATGTATCTCACCCAGATTTAGAGTTCGACATGATCGGCGCAAATCCGAAATTCTTAGTTAGTCTTCCGGTCAACAATCTTGAAGACTATTTGATTGTTAAAACCCCTAGATGTGGACACTAA

mRNA sequence

ATGGAGATGTCACACGAAATGCCACCCGGAGCGAAAACAGAATGGCCAGAGCTTGTGGGTAGAGATGCAAACGAAGCTGAGTTTATTATAGTGAAGGAAAATCCTTTTACCTTACCTTATGTATCTCACCCAGATTTAGAGTTCGACATGATCGGCGCAAATCCGAAATTCTTAGTTAGTCTTCCGGTCAACAATCTTGAAGACTATTTGATTGTTAAAACCCCTAGATGTGGACACTAA

Coding sequence (CDS)

ATGGAGATGTCACACGAAATGCCACCCGGAGCGAAAACAGAATGGCCAGAGCTTGTGGGTAGAGATGCAAACGAAGCTGAGTTTATTATAGTGAAGGAAAATCCTTTTACCTTACCTTATGTATCTCACCCAGATTTAGAGTTCGACATGATCGGCGCAAATCCGAAATTCTTAGTTAGTCTTCCGGTCAACAATCTTGAAGACTATTTGATTGTTAAAACCCCTAGATGTGGACACTAA

Protein sequence

MEMSHEMPPGAKTEWPELVGRDANEAEFIIVKENPFTLPYVSHPDLEFDMIGANPKFLVSLPVNNLEDYLIVKTPRCGH*
Homology
[Close]
BLAST of Csa3G002460 vs. TrEMBL
Match: A0A0A0L652_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002460 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MEMSHEMPPGAKTEWPELVGRDANEAEFIIVKENPFTLPYVSHPDLEFDMIGANPKFLVS 60
          MEMSHEMPPGAKTEWPELVGRDANEAEFIIVKENPFTLPYVSHPDLEFDMIGANPKFLVS
Sbjct: 1  MEMSHEMPPGAKTEWPELVGRDANEAEFIIVKENPFTLPYVSHPDLEFDMIGANPKFLVS 60

Query: 61 LPVNNLEDYLIVKTPRCGH 80
          LPVNNLEDYLIVKTPRCGH
Sbjct: 61 LPVNNLEDYLIVKTPRCGH 79

[Close]
BLAST of Csa3G002460 vs. NCBI nr
Match: gi|700200493|gb|KGN55626.1| (hypothetical protein Csa_3G002460 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 1.9e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MEMSHEMPPGAKTEWPELVGRDANEAEFIIVKENPFTLPYVSHPDLEFDMIGANPKFLVS 60
          MEMSHEMPPGAKTEWPELVGRDANEAEFIIVKENPFTLPYVSHPDLEFDMIGANPKFLVS
Sbjct: 1  MEMSHEMPPGAKTEWPELVGRDANEAEFIIVKENPFTLPYVSHPDLEFDMIGANPKFLVS 60

Query: 61 LPVNNLEDYLIVKTPRCGH 80
          LPVNNLEDYLIVKTPRCGH
Sbjct: 61 LPVNNLEDYLIVKTPRCGH 79

The following BLAST results are available for this feature:
BLAST of Csa3G002460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L652_CUCSA1.3e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002460 PE=4 SV=1[more]
BLAST of Csa3G002460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200493|gb|KGN55626.1|1.9e-39100.00hypothetical protein Csa_3G002460 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000864Prot_inh_pot1
Vocabulary: Molecular Function
TermDefinition
GO:0004867serine-type endopeptidase inhibitor activity
Vocabulary: Biological Process
TermDefinition
GO:0009611response to wounding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010951 negative regulation of endopeptidase activity
biological_process GO:0009611 response to wounding
cellular_component GO:0005575 cellular_component
molecular_function GO:0004867 serine-type endopeptidase inhibitor activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU127710cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G002460.1Csa3G002460.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU127710CU127710transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000864Proteinase inhibitor I13, potato inhibitor IPFAMPF00280potato_inhibitcoord: 12..37
score: 3.
IPR000864Proteinase inhibitor I13, potato inhibitor IPROSITEPS00285POTATO_INHIBITORcoord: 15..26
scor
IPR000864Proteinase inhibitor I13, potato inhibitor IunknownSSF54654CI-2 family of serine protease inhibitorscoord: 9..44
score: 5.4
NoneNo IPR availableGENE3DG3DSA:3.30.10.10coord: 7..35
score: 1.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G002460CSPI03G00420Wild cucumber (PI 183967)cpicuB120
Csa3G002460Cucsa.322940Cucumber (Gy14) v1cgycuB458
Csa3G002460CsGy3G000390Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G002460Cucumber (Chinese Long) v2cucuB119
Csa3G002460Cucumber (Gy14) v1cgycuB024
Csa3G002460Cucurbita maxima (Rimu)cmacuB326
Csa3G002460Cucurbita maxima (Rimu)cmacuB658
Csa3G002460Cucurbita maxima (Rimu)cmacuB827
Csa3G002460Cucurbita maxima (Rimu)cmacuB854
Csa3G002460Cucurbita moschata (Rifu)cmocuB316
Csa3G002460Cucurbita moschata (Rifu)cmocuB646
Csa3G002460Cucurbita moschata (Rifu)cmocuB817
Csa3G002460Cucurbita moschata (Rifu)cmocuB842
Csa3G002460Melon (DHL92) v3.5.1cumeB243
Csa3G002460Melon (DHL92) v3.5.1cumeB262
Csa3G002460Watermelon (Charleston Gray)cuwcgB189
Csa3G002460Watermelon (Charleston Gray)cuwcgB209
Csa3G002460Watermelon (97103) v1cuwmB200
Csa3G002460Watermelon (97103) v1cuwmB261
Csa3G002460Cucurbita pepo (Zucchini)cpecuB069
Csa3G002460Cucurbita pepo (Zucchini)cpecuB212
Csa3G002460Cucurbita pepo (Zucchini)cpecuB484
Csa3G002460Cucurbita pepo (Zucchini)cpecuB555
Csa3G002460Cucurbita pepo (Zucchini)cpecuB851
Csa3G002460Bottle gourd (USVL1VR-Ls)culsiB165
Csa3G002460Bottle gourd (USVL1VR-Ls)culsiB228
Csa3G002460Cucumber (Gy14) v2cgybcuB266
Csa3G002460Melon (DHL92) v3.6.1cumedB224
Csa3G002460Melon (DHL92) v3.6.1cumedB252
Csa3G002460Silver-seed gourdcarcuB0173
Csa3G002460Silver-seed gourdcarcuB0462
Csa3G002460Silver-seed gourdcarcuB0662
Csa3G002460Watermelon (97103) v2cuwmbB178
Csa3G002460Watermelon (97103) v2cuwmbB181
Csa3G002460Wax gourdcuwgoB226
Csa3G002460Wax gourdcuwgoB326