Csa2G439200 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G439200
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 22979402 .. 22980027 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCAAATGCCTCAAATGCCTATGCTGAATACATTTGCTGGAGCAGCTTATCCACAGGGGTTCGTAGGTCCATCATCTGCCCTACCTAATTCCTCGACAGCGGTAGGGGCACAAGGAATCCATTCCGGTGGACTACAGTTTGGACAGAATCAAAACAACTTGCAGCCTGCAGCACAACAATTCAATCCCCCAAACTCGCACCCGCCAGGTACATTTTCAGGAAACGTAGCACCACAACAGTTTAACCAAAACTCATCTTCAAAGCAGGGAAGAAAATCTCATGGTCGCGGAGGAAATCATTTTAGAGGTAGAAGAGGTGGACGACAAAGTAGATGAACCATTACTCGTTTCTTCATGATAGAGGTTTGCATATGTGCAATTCCTAAATTTTGATTACAATCTGTCGTGTACAATCCTTTCATCAATCTGGGTTGGATGAGAATTAGGAAGTTAGTAGTCGCAATCATTTATTTCAGGGGTTAGTTTCTTTTTAATCGCTTGTTGGCTATATTCGTCTTCTCTACTGCACAATTCCTCCTGAGATCTATTTTAGAATTTGTTTAGTCGTGGTTTTATGCTCTAAAATAATTTCTTGCTGTCTCAGTCCGCCATTTAAAACAAGA

mRNA sequence

ATGCCTCAAATGCCTCAAATGCCTATGCTGAATACATTTGCTGGAGCAGCTTATCCACAGGGGTTCGTAGGTCCATCATCTGCCCTACCTAATTCCTCGACAGCGGTAGGGGCACAAGGAATCCATTCCGGTGGACTACAGTTTGGACAGAATCAAAACAACTTGCAGCCTGCAGCACAACAATTCAATCCCCCAAACTCGCACCCGCCAGGTACATTTTCAGGAAACGTAGCACCACAACAGTTTAACCAAAACTCATCTTCAAAGCAGGGAAGAAAATCTCATGGTCGCGGAGGAAATCATTTTAGAGGTAGAAGAGGTGGACGACAAAGTAGATGA

Coding sequence (CDS)

ATGCCTCAAATGCCTCAAATGCCTATGCTGAATACATTTGCTGGAGCAGCTTATCCACAGGGGTTCGTAGGTCCATCATCTGCCCTACCTAATTCCTCGACAGCGGTAGGGGCACAAGGAATCCATTCCGGTGGACTACAGTTTGGACAGAATCAAAACAACTTGCAGCCTGCAGCACAACAATTCAATCCCCCAAACTCGCACCCGCCAGGTACATTTTCAGGAAACGTAGCACCACAACAGTTTAACCAAAACTCATCTTCAAAGCAGGGAAGAAAATCTCATGGTCGCGGAGGAAATCATTTTAGAGGTAGAAGAGGTGGACGACAAAGTAGATGA

Protein sequence

MPQMPQMPMLNTFAGAAYPQGFVGPSSALPNSSTAVGAQGIHSGGLQFGQNQNNLQPAAQQFNPPNSHPPGTFSGNVAPQQFNQNSSSKQGRKSHGRGGNHFRGRRGGRQSR*

Homology

[Close]

BLAST of Csa2G439200 vs. TrEMBL
Match: A0A0A0LRH8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G439200 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 9.3e-60
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MPQMPQMPMLNTFAGAAYPQGFVGPSSALPNSSTAVGAQGIHSGGLQFGQNQNNLQPAAQ 60
           MPQMPQMPMLNTFAGAAYPQGFVGPSSALPNSSTAVGAQGIHSGGLQFGQNQNNLQPAAQ
Sbjct: 1   MPQMPQMPMLNTFAGAAYPQGFVGPSSALPNSSTAVGAQGIHSGGLQFGQNQNNLQPAAQ 60

Query: 61  QFNPPNSHPPGTFSGNVAPQQFNQNSSSKQGRKSHGRGGNHFRGRRGGRQSR 113
           QFNPPNSHPPGTFSGNVAPQQFNQNSSSKQGRKSHGRGGNHFRGRRGGRQSR
Sbjct: 61  QFNPPNSHPPGTFSGNVAPQQFNQNSSSKQGRKSHGRGGNHFRGRRGGRQSR 112

[Close]

BLAST of Csa2G439200 vs. TrEMBL
Match: M5WWP4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001913mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 44/114 (38.60%), Postives = 50/114 (43.86%), Query Frame = 1


Query: 10  LNTFAGAAYPQGFVGPSS-----------ALPNSSTAVGAQGIHSGGLQFGQNQNNLQPA 69
           LN FAG  YPQG VG                P   T    QG+ S  L   QN N  QP 
Sbjct: 642 LNVFAGPMYPQGMVGQHGFNQNAFGIGLQGQPTHPTLNADQGMLSNRLPVEQNCNMPQPV 701

Query: 70  AQQFNPPNSHPPGTFSGNVAPQQFNQNSSSKQGRKSHGRGGNHFRGRRGGRQSR 113
           A              +GNV  QQFN  +SS +GR+   RGG HF   RG +QSR
Sbjct: 702 AN-------------TGNVDMQQFNPGASSNRGRRPSHRGGRHFGRGRGRQQSR 742

[Close]

BLAST of Csa2G439200 vs. NCBI nr
Match: gi|778674465|ref|XP_011650221.1| (PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Cucumis sativus])

HSP 1 Score: 237.3 bits (604), Expect = 1.3e-59
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MPQMPQMPMLNTFAGAAYPQGFVGPSSALPNSSTAVGAQGIHSGGLQFGQNQNNLQPAAQ 60
           MPQMPQMPMLNTFAGAAYPQGFVGPSSALPNSSTAVGAQGIHSGGLQFGQNQNNLQPAAQ
Sbjct: 737 MPQMPQMPMLNTFAGAAYPQGFVGPSSALPNSSTAVGAQGIHSGGLQFGQNQNNLQPAAQ 796

Query: 61  QFNPPNSHPPGTFSGNVAPQQFNQNSSSKQGRKSHGRGGNHFRGRRGGRQSR 113
           QFNPPNSHPPGTFSGNVAPQQFNQNSSSKQGRKSHGRGGNHFRGRRGGRQSR
Sbjct: 797 QFNPPNSHPPGTFSGNVAPQQFNQNSSSKQGRKSHGRGGNHFRGRRGGRQSR 848

[Close]

BLAST of Csa2G439200 vs. NCBI nr
Match: gi|700208293|gb|KGN63412.1| (hypothetical protein Csa_2G439200 [Cucumis sativus])

HSP 1 Score: 237.3 bits (604), Expect = 1.3e-59
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MPQMPQMPMLNTFAGAAYPQGFVGPSSALPNSSTAVGAQGIHSGGLQFGQNQNNLQPAAQ 60
           MPQMPQMPMLNTFAGAAYPQGFVGPSSALPNSSTAVGAQGIHSGGLQFGQNQNNLQPAAQ
Sbjct: 1   MPQMPQMPMLNTFAGAAYPQGFVGPSSALPNSSTAVGAQGIHSGGLQFGQNQNNLQPAAQ 60

Query: 61  QFNPPNSHPPGTFSGNVAPQQFNQNSSSKQGRKSHGRGGNHFRGRRGGRQSR 113
           QFNPPNSHPPGTFSGNVAPQQFNQNSSSKQGRKSHGRGGNHFRGRRGGRQSR
Sbjct: 61  QFNPPNSHPPGTFSGNVAPQQFNQNSSSKQGRKSHGRGGNHFRGRRGGRQSR 112

[Close]

BLAST of Csa2G439200 vs. NCBI nr
Match: gi|659118557|ref|XP_008459182.1| (PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X2 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 1.9e-53
Identity = 103/110 (93.64%), Postives = 104/110 (94.55%), Query Frame = 1


Query: 3   QMPQMPMLNTFAGAAYPQGFVGPSSALPNSSTAVGAQGIHSGGLQFGQNQNNLQPAAQQF 62
           QMPQMPMLNTF GAAYPQGFVG SSALPNS T VGAQGIHSGGLQFGQNQNNLQPAAQQF
Sbjct: 483 QMPQMPMLNTFVGAAYPQGFVGSSSALPNSLTTVGAQGIHSGGLQFGQNQNNLQPAAQQF 542

Query: 63  NPPNSHPPGTFSGNVAPQQFNQNSSSKQGRKSHGRGGNHFRGRRGGRQSR 113
           NPPNSHPPGTFSGN APQQFNQNSSSKQGRKSHGRGG HFRGRRGG+QSR
Sbjct: 543 NPPNSHPPGTFSGNRAPQQFNQNSSSKQGRKSHGRGGPHFRGRRGGQQSR 592

[Close]

BLAST of Csa2G439200 vs. NCBI nr
Match: gi|659118555|ref|XP_008459181.1| (PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 1.9e-53
Identity = 103/110 (93.64%), Postives = 104/110 (94.55%), Query Frame = 1


Query: 3   QMPQMPMLNTFAGAAYPQGFVGPSSALPNSSTAVGAQGIHSGGLQFGQNQNNLQPAAQQF 62
           QMPQMPMLNTF GAAYPQGFVG SSALPNS T VGAQGIHSGGLQFGQNQNNLQPAAQQF
Sbjct: 588 QMPQMPMLNTFVGAAYPQGFVGSSSALPNSLTTVGAQGIHSGGLQFGQNQNNLQPAAQQF 647

Query: 63  NPPNSHPPGTFSGNVAPQQFNQNSSSKQGRKSHGRGGNHFRGRRGGRQSR 113
           NPPNSHPPGTFSGN APQQFNQNSSSKQGRKSHGRGG HFRGRRGG+QSR
Sbjct: 648 NPPNSHPPGTFSGNRAPQQFNQNSSSKQGRKSHGRGGPHFRGRRGGQQSR 697

[Close]

BLAST of Csa2G439200 vs. NCBI nr
Match: gi|659133170|ref|XP_008466591.1| (PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 2.3e-51
Identity = 99/110 (90.00%), Postives = 102/110 (92.73%), Query Frame = 1


Query: 3   QMPQMPMLNTFAGAAYPQGFVGPSSALPNSSTAVGAQGIHSGGLQFGQNQNNLQPAAQQF 62
           QMPQMP+LNTFAGAAYPQGFVGP SALPNS T VGAQGIHSGGLQFGQNQNNLQPAAQQF
Sbjct: 588 QMPQMPILNTFAGAAYPQGFVGPLSALPNSLTTVGAQGIHSGGLQFGQNQNNLQPAAQQF 647

Query: 63  NPPNSHPPGTFSGNVAPQQFNQNSSSKQGRKSHGRGGNHFRGRRGGRQSR 113
           NPPNSHPPGT SGN+APQQ NQNSSSKQGRKS GRGG HFRG RGG+QSR
Sbjct: 648 NPPNSHPPGTLSGNIAPQQLNQNSSSKQGRKSRGRGGPHFRGSRGGQQSR 697

The following BLAST results are available for this feature:

BLAST of Csa2G439200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRH8_CUCSA	9.3e-60	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G439200 PE=4 SV=1	[more]
M5WWP4_PRUPE	3.1e-07	38.60	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001913mg PE=4 SV=1	[more]

BLAST of Csa2G439200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674465\|ref\|XP_011650221.1\|	1.3e-59	100.00	PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Cucumis sativu...	[more]
gi\|700208293\|gb\|KGN63412.1\|	1.3e-59	100.00	hypothetical protein Csa_2G439200 [Cucumis sativus]	[more]
gi\|659118557\|ref\|XP_008459182.1\|	1.9e-53	93.64	PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X2...	[more]
gi\|659118555\|ref\|XP_008459181.1\|	1.9e-53	93.64	PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1...	[more]
gi\|659133170\|ref\|XP_008466591.1\|	2.3e-51	90.00	PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU108900	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G439200.1	Csa2G439200.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU108900	CU108900	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G439200	Cucumber (Gy14) v1	cgycuB456
Csa2G439200	Cucurbita maxima (Rimu)	cmacuB544
Csa2G439200	Cucurbita maxima (Rimu)	cmacuB590
Csa2G439200	Cucurbita moschata (Rifu)	cmocuB533
Csa2G439200	Cucurbita moschata (Rifu)	cmocuB579
Csa2G439200	Melon (DHL92) v3.5.1	cumeB086
Csa2G439200	Melon (DHL92) v3.5.1	cumeB088
Csa2G439200	Watermelon (Charleston Gray)	cuwcgB092
Csa2G439200	Watermelon (97103) v1	cuwmB102
Csa2G439200	Cucurbita pepo (Zucchini)	cpecuB270
Csa2G439200	Cucurbita pepo (Zucchini)	cpecuB706
Csa2G439200	Bottle gourd (USVL1VR-Ls)	culsiB094
Csa2G439200	Cucumber (Gy14) v2	cgybcuB057
Csa2G439200	Melon (DHL92) v3.6.1	cumedB084
Csa2G439200	Silver-seed gourd	carcuB1067
Csa2G439200	Watermelon (97103) v2	cuwmbB167
Csa2G439200	Wax gourd	cuwgoB174