Csa2G418870 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G418870
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 21700834 .. 21701273 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTTCTTAATCTTGGCGTCAATGAAGCTATTCTGAATCTGCGTGGGAACGACGCAGTGAAGACAGGTGAAGAAGTTAGTTCAATTTAGACGAAATAGAACAAGTGAACAGTACAGCGCATGACCTTCACCATCATCGCCGCAGGAAAAATGGAATCAAAAGAGATGGGGAGAGAGAGATTGGCAGAAAAAACATTGAAAGAGGAGAAGTGTCACGGAACGACGGTCAGCAGAGGGGAGTGGGTGAATACTGGAAGGCGGCGCTGAGTTGTTGCGGTTGTTGGTTATCGAGAGAGAAGAGAGAAGAGAGAAGGGAGAGGAGGAGCTTACCGGCAGCGAACAACGACTGGACTCAGGCTGGTTGGCAACCGGTCGGTGCTACCTGTGGCGCTGCCTTTTGGTGCTTCTTTTCACTCAAATGTTTACTCTTAATTTAG

mRNA sequence

ATGTTGTTTCTTAATCTTGGCGTCAATGAAGCTATTCTGAATCTGCGTGGGAACGACGCAGTGAAGACAGAACAAGTGAACAGTACAGCGCATGACCTTCACCATCATCGCCGCAGGAAAAATGGAATCAAAAGAGATGGGGAGAGAGAGATTGGCAGAAAAAACATTGAAAGAGGAGAAGTGTCACGGAACGACGGTCAGCAGAGGGGAGTGGGTGAATACTGGAAGGCGGCGCTGAGTTGTTGCGGTTGTTGGTTATCGAGAGAGAAGAGAGAAGAGAGAAGGGAGAGGAGGAGCTTACCGGCAGCGAACAACGACTGGACTCAGGCTGGTTGGCAACCGGTCGGTGCTACCTGTGGCGCTGCCTTTTGGTGCTTCTTTTCACTCAAATGTTTACTCTTAATTTAG

Coding sequence (CDS)

ATGTTGTTTCTTAATCTTGGCGTCAATGAAGCTATTCTGAATCTGCGTGGGAACGACGCAGTGAAGACAGAACAAGTGAACAGTACAGCGCATGACCTTCACCATCATCGCCGCAGGAAAAATGGAATCAAAAGAGATGGGGAGAGAGAGATTGGCAGAAAAAACATTGAAAGAGGAGAAGTGTCACGGAACGACGGTCAGCAGAGGGGAGTGGGTGAATACTGGAAGGCGGCGCTGAGTTGTTGCGGTTGTTGGTTATCGAGAGAGAAGAGAGAAGAGAGAAGGGAGAGGAGGAGCTTACCGGCAGCGAACAACGACTGGACTCAGGCTGGTTGGCAACCGGTCGGTGCTACCTGTGGCGCTGCCTTTTGGTGCTTCTTTTCACTCAAATGTTTACTCTTAATTTAG

Protein sequence

MLFLNLGVNEAILNLRGNDAVKTEQVNSTAHDLHHHRRRKNGIKRDGEREIGRKNIERGEVSRNDGQQRGVGEYWKAALSCCGCWLSREKREERRERRSLPAANNDWTQAGWQPVGATCGAAFWCFFSLKCLLLI*
Homology
[Close]
BLAST of Csa2G418870 vs. TrEMBL
Match: A0A0A0LT89_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G418870 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 3.2e-75
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1 

Query: 1   MLFLNLGVNEAILNLRGNDAVKTEQVNSTAHDLHHHRRRKNGIKRDGEREIGRKNIERGE 60
           MLFLNLGVNEAILNLRGNDAVKTEQVNSTAHDLHHHRRRKNGIKRDGEREIGRKNIERGE
Sbjct: 1   MLFLNLGVNEAILNLRGNDAVKTEQVNSTAHDLHHHRRRKNGIKRDGEREIGRKNIERGE 60

Query: 61  VSRNDGQQRGVGEYWKAALSCCGCWLSREKREERRERRSLPAANNDWTQAGWQPVGATCG 120
           VSRNDGQQRGVGEYWKAALSCCGCWLSREKREERRERRSLPAANNDWTQAGWQPVGATCG
Sbjct: 61  VSRNDGQQRGVGEYWKAALSCCGCWLSREKREERRERRSLPAANNDWTQAGWQPVGATCG 120

Query: 121 AAFWCFFSLKCLLLI 136
           AAFWCFFSLKCLLLI
Sbjct: 121 AAFWCFFSLKCLLLI 135

[Close]
BLAST of Csa2G418870 vs. NCBI nr
Match: gi|700208132|gb|KGN63251.1| (hypothetical protein Csa_2G418870 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 4.7e-75
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1 

Query: 1   MLFLNLGVNEAILNLRGNDAVKTEQVNSTAHDLHHHRRRKNGIKRDGEREIGRKNIERGE 60
           MLFLNLGVNEAILNLRGNDAVKTEQVNSTAHDLHHHRRRKNGIKRDGEREIGRKNIERGE
Sbjct: 1   MLFLNLGVNEAILNLRGNDAVKTEQVNSTAHDLHHHRRRKNGIKRDGEREIGRKNIERGE 60

Query: 61  VSRNDGQQRGVGEYWKAALSCCGCWLSREKREERRERRSLPAANNDWTQAGWQPVGATCG 120
           VSRNDGQQRGVGEYWKAALSCCGCWLSREKREERRERRSLPAANNDWTQAGWQPVGATCG
Sbjct: 61  VSRNDGQQRGVGEYWKAALSCCGCWLSREKREERRERRSLPAANNDWTQAGWQPVGATCG 120

Query: 121 AAFWCFFSLKCLLLI 136
           AAFWCFFSLKCLLLI
Sbjct: 121 AAFWCFFSLKCLLLI 135

The following BLAST results are available for this feature:
BLAST of Csa2G418870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT89_CUCSA3.2e-75100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G418870 PE=4 SV=1[more]
BLAST of Csa2G418870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208132|gb|KGN63251.1|4.7e-75100.00hypothetical protein Csa_2G418870 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU132406cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G418870.1Csa2G418870.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU132406CU132406transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G418870Cucumber (Chinese Long) v2cucuB066
Csa2G418870Cucumber (Chinese Long) v2cucuB078
Csa2G418870Cucumber (Gy14) v1cgycuB020
Csa2G418870Cucumber (Gy14) v1cgycuB066
Csa2G418870Cucumber (Gy14) v1cgycuB213
Csa2G418870Cucurbita maxima (Rimu)cmacuB114
Csa2G418870Cucurbita maxima (Rimu)cmacuB505
Csa2G418870Cucurbita maxima (Rimu)cmacuB539
Csa2G418870Cucurbita maxima (Rimu)cmacuB589
Csa2G418870Cucurbita moschata (Rifu)cmocuB101
Csa2G418870Cucurbita moschata (Rifu)cmocuB493
Csa2G418870Cucurbita moschata (Rifu)cmocuB534
Csa2G418870Cucurbita moschata (Rifu)cmocuB578
Csa2G418870Cucurbita moschata (Rifu)cmocuB841
Csa2G418870Melon (DHL92) v3.5.1cumeB097
Csa2G418870Melon (DHL92) v3.5.1cumeB103
Csa2G418870Melon (DHL92) v3.5.1cumeB158
Csa2G418870Watermelon (Charleston Gray)cuwcgB110
Csa2G418870Watermelon (Charleston Gray)cuwcgB123
Csa2G418870Watermelon (Charleston Gray)cuwcgB128
Csa2G418870Watermelon (97103) v1cuwmB134
Csa2G418870Watermelon (97103) v1cuwmB142
Csa2G418870Watermelon (97103) v1cuwmB145
Csa2G418870Cucurbita pepo (Zucchini)cpecuB233
Csa2G418870Cucurbita pepo (Zucchini)cpecuB269
Csa2G418870Cucurbita pepo (Zucchini)cpecuB663
Csa2G418870Cucurbita pepo (Zucchini)cpecuB705
Csa2G418870Bottle gourd (USVL1VR-Ls)culsiB094
Csa2G418870Bottle gourd (USVL1VR-Ls)culsiB099
Csa2G418870Bottle gourd (USVL1VR-Ls)culsiB112
Csa2G418870Cucumber (Gy14) v2cgybcuB057
Csa2G418870Cucumber (Gy14) v2cgybcuB248
Csa2G418870Cucumber (Gy14) v2cgybcuB296
Csa2G418870Melon (DHL92) v3.6.1cumedB088
Csa2G418870Melon (DHL92) v3.6.1cumedB097
Csa2G418870Melon (DHL92) v3.6.1cumedB148
Csa2G418870Silver-seed gourdcarcuB0025
Csa2G418870Silver-seed gourdcarcuB0361
Csa2G418870Silver-seed gourdcarcuB0889
Csa2G418870Watermelon (97103) v2cuwmbB097
Csa2G418870Watermelon (97103) v2cuwmbB119
Csa2G418870Watermelon (97103) v2cuwmbB124
Csa2G418870Wax gourdcuwgoB174
Csa2G418870Wax gourdcuwgoB151
Csa2G418870Wax gourdcuwgoB193