Csa2G406120 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G406120
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 20977651 .. 20977924 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTGCCTCTAAAAGGGAATTGGGAGAAATGGGTGGGACAAAACACAGCGCAGGAGGTGAGAAATGGGAATGATAACGTGGGGTCGATTGATAGGAAATGGGGTGGCAAAATAAAAATGGTTGTTTATGATAATTAATTAGAAAAATCTCCATCATAGCGGTTGGCGATTCATCACTGCCCTGCGTTCTGTTATGCACGATACACAAGAAAGTAGGAGTTGGGATATGGCTATGGGTGTGGCCTGTGGTGGCTATGGCGATTCGAATTAG

mRNA sequence

ATGGGGTTGCCTCTAAAAGGGAATTGGGAGAAATGGGTGGGACAAAACACAGCGCAGGAGAAAAATCTCCATCATAGCGGTTGGCGATTCATCACTGCCCTGCGTTCTGTTATGCACGATACACAAGAAAGTAGGAGTTGGGATATGGCTATGGGTGTGGCCTGTGGTGGCTATGGCGATTCGAATTAG

Coding sequence (CDS)

ATGGGGTTGCCTCTAAAAGGGAATTGGGAGAAATGGGTGGGACAAAACACAGCGCAGGAGAAAAATCTCCATCATAGCGGTTGGCGATTCATCACTGCCCTGCGTTCTGTTATGCACGATACACAAGAAAGTAGGAGTTGGGATATGGCTATGGGTGTGGCCTGTGGTGGCTATGGCGATTCGAATTAG

Protein sequence

MGLPLKGNWEKWVGQNTAQEKNLHHSGWRFITALRSVMHDTQESRSWDMAMGVACGGYGDSN*
Homology
[Close]
BLAST of Csa2G406120 vs. TrEMBL
Match: A0A0A0LMX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406120 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.5e-30
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MGLPLKGNWEKWVGQNTAQEKNLHHSGWRFITALRSVMHDTQESRSWDMAMGVACGGYGD 60
          MGLPLKGNWEKWVGQNTAQEKNLHHSGWRFITALRSVMHDTQESRSWDMAMGVACGGYGD
Sbjct: 1  MGLPLKGNWEKWVGQNTAQEKNLHHSGWRFITALRSVMHDTQESRSWDMAMGVACGGYGD 60

Query: 61 SN 63
          SN
Sbjct: 61 SN 62

[Close]
BLAST of Csa2G406120 vs. NCBI nr
Match: gi|700208044|gb|KGN63163.1| (hypothetical protein Csa_2G406120 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 2.1e-30
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MGLPLKGNWEKWVGQNTAQEKNLHHSGWRFITALRSVMHDTQESRSWDMAMGVACGGYGD 60
          MGLPLKGNWEKWVGQNTAQEKNLHHSGWRFITALRSVMHDTQESRSWDMAMGVACGGYGD
Sbjct: 1  MGLPLKGNWEKWVGQNTAQEKNLHHSGWRFITALRSVMHDTQESRSWDMAMGVACGGYGD 60

Query: 61 SN 63
          SN
Sbjct: 61 SN 62

The following BLAST results are available for this feature:
BLAST of Csa2G406120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMX9_CUCSA1.5e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406120 PE=4 SV=1[more]
BLAST of Csa2G406120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208044|gb|KGN63163.1|2.1e-30100.00hypothetical protein Csa_2G406120 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G406120.1Csa2G406120.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G406120CSPI02G25570Wild cucumber (PI 183967)cpicuB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G406120Melon (DHL92) v3.6.1cumedB112
Csa2G406120Silver-seed gourdcarcuB0018
Csa2G406120Silver-seed gourdcarcuB1024
Csa2G406120Watermelon (97103) v2cuwmbB114
Csa2G406120Wax gourdcuwgoB164
Csa2G406120Cucumber (Gy14) v1cgycuB090
Csa2G406120Cucurbita maxima (Rimu)cmacuB277
Csa2G406120Cucurbita maxima (Rimu)cmacuB694
Csa2G406120Cucurbita moschata (Rifu)cmocuB264
Csa2G406120Cucurbita moschata (Rifu)cmocuB684
Csa2G406120Melon (DHL92) v3.5.1cumeB115
Csa2G406120Watermelon (Charleston Gray)cuwcgB098
Csa2G406120Watermelon (97103) v1cuwmB160
Csa2G406120Cucurbita pepo (Zucchini)cpecuB167
Csa2G406120Cucurbita pepo (Zucchini)cpecuB386
Csa2G406120Bottle gourd (USVL1VR-Ls)culsiB115
Csa2G406120Cucumber (Gy14) v2cgybcuB057