Csa2G396220 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G396220
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionQueuine tRNA-ribosyltransferase, putative; contains IPR002616 (tRNA-guanine(15) transglycosylase-like)
LocationChr2 : 20367443 .. 20373293 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCTTCCCTCACTGCCTCGAGTGGTTCTGAAAATGCTGCTGCTAGACCACCCTTTTCACCACAAATTTTAAACGGCCTCTCTCTCAAAGAACTCCATTTAGCCGGTGTCGCCCAATCTTCAACAAAGGTTGTTACCCCAATCAAGCTCAGACTATGTAAAGGAAAGAGTAAAGGCAGCTCTCTGAAAATCCCCCCTAAAGAGTCATTAGAAAACAAACATCTTTTGATAATGTCTGGACTGCATTGCTAAAGTGTGAATCTCTTGGTGCTTGCTCCCTCAAAGCTCCAAAAGAGGCCCCACAGCAGAAATCAATGAGCAAGCTCTCTTTGTTTTAGGATAACCCGGATGTTCTGGAGGTCTGCAGCTCCAAAAAGCAAACTGTTACACTTCAAAACAGGCCAGTTACAGTTCCACCAACTCTTAAACTTTTTAATTTCTTGAGTTTCACAGATCCTAACACTAAAATCACTTTATTACGAGGATGTCCATGCCAATCGGTTGACTCAGTTAAGAAAGTCAAACACAGAAATAGTCTCTCCCTATAGTGTTAGCAATGAAGAATCAAAGGGTTTGAAGTACACTAACAAGAATGCTGAAATAGAAGCAGTGGATTTGATTACTTATTTAAAAGGGGAGGCCCTGTTAAATTATTAGAAGTCCCACTGCTGGTTTGAGTAAGGCCTTTCAGGATCCCTTTCCCATGAAGATAATTTCTTGGAATACAAGGGGACTGAAAGATCCCACCAAGTGCTTAGCCCTCAAGAAATTCATAAAGAATCATCATCCAGATGTGGTTATGATTCAAGATCGAAAATGGAAAACTTTGATGCAGTATTTTGTTAAGTCAATATGGAATTCCAAAGACAGCGAATGGGAGTTTGTGGAATCTTTAGGTGCATCAGGAGGTATCCTCACAATGTGGGACAAGAGCAAAATTACTGTGGTTGAGAATATCAAAGGGAGGTTTTCTCTCTCAATTAAAGGCGATACGGTGTGCAAGAAACGATGTTGGAATACCAATGTATATGGTTCGTGTGGTTACTGGTTACAGAGAAAAAAACTCTTTGGCCAGAGCTCTCATCCATTTTAGAATGTGGTGTTGAGGCTTGGTGTTTGGGAGGAGACTTCAACGTTACTCGCATGGCAGATGAGAGACCTCCCATTGGTAGAAACACAAGAGGAATGAGGCTTTTTAATAACTTCATTGATTCAGCTAACATCATGGAACTTCCTCTTCAAAATGGCAGATTCACATGGTCTAGAGAGGGAGGATTAGCCTCAAGGTCCTTGCTGGATAGATTTTTTATTTATAACAAATGGGAAGAAGTGTTTGAGAACAGAGTGTCCGGTAAAGCATGAATATTCTCTAATCATTTTCCTTTACTATTGGAGTCGGGCGATTCTATGGGGGCCTTATCCATTCAGGTTTTGCAGTAGCTGGCTGCTGGTCAAAGAATATAATCTAGTCATTGAAGGAGCTCTGAACAGTCCTCTTGGCAATGGTTGGGCAGGATTCATATTACATGAACAACTGCACAAAGTTAAAATAACAGTAAAGGAGTAGCACACCTTTTTTCAGGTCTCCTTTAAGCAGAAAGAAGACAGGTTGTTGAAGGAATTCAAAGCCTGTGACGTGATTGCAGAATGGTTTGGTTTAAATGATGAAAATTGGCCCGTAAATCTGCCATTCAAGCAGATTTATTAAGTGCTTACAGAGTTGAATAGAGAAATTGCATCCAGAAAAGTAAACTAAACTGATTGGCAGTAGGGGATCAGAACACGGGCTTCTTTCACATATATCTTAATGTAAAAAAAGGAGATATTTAATCACAAAATTGGTGGATGAGCAAGGGATGGCAACAAAGTCATTTCGAGATATTGAGAGGCTTTTATTGGGATTTTTTTTATGGCTTCTATAAAAGGATTCCAGGGGACAGATGCATCCCTTATATTACAGACTGGCCTTGTGTCACTCCCAATCAGAATTTGCTACTTGTCACTAGATTTTTGGAGGAGGAAATATTTAAGGCAGTCAAGGCACTTGGTGGAAATAAAGCTCCCAGATCGGATGGTTTCATCAAGGAGTTCCTCGTGAAGCACGGGCTGAAATCAAAAGGAAGCTTTAAAAATTTGTTTGATGATTTTCACATAAATGTAAAGCTCAATGCTTGCATTCAAGAAAACTTCATTTGTTCAATACAAGGGAAAGAGGATGTGGTTCACGCAAAGGATTTTAGACCCATTTGCCTAACCACCCTCACATACAAGGCGATAGCTAAATTGTTAGTGGATCGTGTAAAACTGGTTTTGGATTCAATCATAAGCCCATTTCAAAGCGCATTTACTGAAGGAAGGAAGATATTAGACCTGGTTCTAATAGCTAACGAGGCAATTGAAGTCTATCGTGCTAAAAAGAAGAGATGGATTTTAAAATTAGATCTTGAAAAAGCCTTTGATGGAGTGGATTGAGGCTTCCTTGAAAAGATATTGCATTGTAAGAAGTTCAACTCTAAATGGTCATCCTGGATGTTGGGTTGCCTAAAAAATCCTCGATTCTCCATCTTCATCTACGGAAAACCAAGAGGAAGGATAGTGGCTTCTATGAGGCATTTGACAAGAAGATCCTCTTTCTCCCCTTTTATTTCTGCTTGTCAGTAAAGTTTTAGGAGGCACCATTAACAAGGTGCACGATAAAAGGTCAATTTGAAGGCTTCATGGTTGGAAAAGATAGGGTTCACATTCCATTATCCAATACTCTGATGATACTATCCTATTATGTAAAAATGATGAGGCCATGCTCATCAAGTTAAAGGAAGCTATTAATTTGTTTGAACGGTGTTTTGGCCAGGGGACAAATCGGAACTCCAAATGTGGGGATGAAGAATTACTCCAAATGGTAGGAAAATTAGGATGCAAAGTGGAAAAGCTTCCTGTTTTGTCTTTAGGTCTTCCTTTGGGAGGCTATCCAACGCAGAAAGACTTTTGACGTTCAGTGATTGACAGGGTACACAAAAAATTGGATGCATGGAAAAGGTTCAATATCTCAAGAGGTGGAAGACAGACCTTATGTAATTCAGTCTTGGCTAGCCTTCCAACGTATTACTTGTCTATATTTGCCATTCCAGAAAATGTAGCTTCTACTCTAGAAAAGCTAATGAGAAATTTCTTTTTTGGAGGGACACTCTAGTAGAAAAATAAACCATCTGGTGCCTTGGAGAAAAGTCAGACCTTCTCAGCTTGATGTGAGGCTGGGATTGGGTGGTATCAAAACTCAAAATATGACTGCTAAATGGTGGCGATACACGAAGGAGGATATCGCGCTGTAGAGACAAGTGATAGAAGTTGGCAGTGAAGCTTTTGATAGATTGATTGGCACACTTTGAGCAATTTCGAGAATAGTCTAAGAAGTCCTTTGGGTCAACATCTTAAGAACATGGAGAAAGGTGGAAGTATTGGCCTCTTCTAAGCTTGCAATGGAAGAAGATTGGCATTTTGGGCAAACTCATGGGTAGGTAATGTCTCTCTAAACATTCAATATCTGAAACTATTCAGAATAGCCTTGCTTCCTAACGGTTCAGTTGCATCCCATTGGGACATAGCCACAAACTCTTGGTCTATAGTGTTTCATAGACTACTGAAAGATGATGAAATTCCGAACTTCCAATCTTTGCTACTCCTCTCTTTTAAGAGAGTGACATAATTGGAAGATAGATGAGCACGGTCATTAAACTCATCGGGCAGATTCTCAATCAAATCCCTTTCGACCCACCCTTCTTCCCCATTGGACAAAGATATCTTTAAAGTTCTTTGGAAGACTAATAATCCAAGGAGAGTCAACATATTAATTTGGATTATGGCATTTGGTCTCCTTCACTGCTCCTACTTGATCATGCAAAGAAAAATCCCTAACGAGTTCTTGTTGTGTTCGGTGTGTCCTCTATGCTTAAAGAACAGTGAGGATTTACTACGTTTATTTATTTTAAGCCCCTACTCCTTCAATTGCTTGAGAAGTATTTTCTTTATTTTTAATCTGGTTTGGACTTTCAACGGATCTTTAAGTTCCAATGTTTTTCAGTTGTTGAGAGCCCCTTTGTTGCCAAAGAAGCCGAGACTAATTTGGATAAACATGGCAAAAGCTTTATTGGCAGAAATATGGTTTGAGCGCAATCAGCGGATATTTAGCGACAGGGAAAGGGGCTGGGTGGGCACTTTAGACACGACAAATGGATTATTCTATTCGGGACGTATGCCTAAACTAGACAGCTTTCATCCACCAAAGACTCAAGACTACAGGATTATACATGTTTGGGGGCCTTTGGGAGTTCTATCTCCCCTCCCTGTTTTGTTTCTTTGTTTTCCTCTAGTTGTTAGTCTTCTAGTATATTTGATACCTATATGTTCTCTTGCTGTTTCTATGGGATATAATGATGGCGCTAAGGGGATGTCAACTTAGTTGAGATGTTCGGGTGCATCTCTTGATCCTCTACTTTTAGGCTTCTCTATTATTCTCATTGTATAATTTTCCTCTACTTTGAGTTTTATATTAATAAAGAAGTTTTTTTCTGTTTAAAAAAAGTGCATCTTAGAGTAGTATTGAACATGACAAAAGTGATTTTAATAATTTCAAAAATCAAAATCACTCTCAAACATGTACTACATCATGGTTTGACTTTTTGGTTGGACTCTTGTATCTAATCTACGAAGGATGAAAATATATAACTTTAATATTTTAATGACACTAAAGTGATGTTGGTTTATGGTTTTATTAGCCTCAATATTTGGTAGCTGACTTAATAAATATTTGTATTGGTGTGTCCTCATCCTATGATGAATTCGAAGGTTTCTACTTTACGTCTGGTTCTCATTTTCATTAAACTTTCATTTATTTATATATACGTTTACTTTGATGTTGCAGAGGAGGTCTTGCAGGGCATTGCTGCGGGAGTTGATCTCTTTGACTCTGCGTATGTTGATCATTTTAAATTTAGTTAGTTTGTCTTTCTATGATTGTTTCTCTATAAATAGTTCCATTATTGTGTTGTAGGTACATATATCATTTAACCCTTGGAGGCTTTGCTCTCACCTTCCCACTTGATGGAATTGTGGAGAAACAGCCAGACGCGCACCTGATAGACAATGCAAGTGACATGACAAAGATTAACTTAAGAGCAATAGTTTTTCGGTAAGTTTTCAATACTTAAGATCTCTATTATTGCTTCAGTATTGATTTGCCAGCATTTAGCCTTTTTCTAATTTGCATTATCTATGTCTTTGCCAAAAAAAATTATTGCTTTTGCCAGGAAAGATACATCACCAATTCTTGAGGGGTGTAATTGCTATACTTGCCTGAATCATACGAAGGCTTATATAAATCACTTGCTAAATGTCCATGAAATGCTGGCTCAGATACTGCTGGAGATGTATGGACGTTTCACTTGATGATATATACTTAGTCGTCCCTAAATTTTATTCTCACAATAATTATTAATTTATTCTCACCTCATTGCAGACACAATACTTATCATTATTTAGGATTCTTTCAATCAATCCGAGAAGCAATCAAGGTAGGCAAATTTCAGCAATTTCATCAGAAATTTGTGGAGGAGAGGCGCAATCATCTGACCTTGCCTACATCAGCACTCAGCTCTTGACGAGCTCATCTAACAAGTAATTTTTATATTGAAAAGAATGTTATGCCTCATTAAATTACGTTATGAGTTGATTCATAATATATTAACAGCAATGTGTACCTTCACTTATTAAAGAGTACTTCAATAATTAGTGGTGTAGACTAGGGAGGTATTAATCAACGATTATTATGTATAAACTATTCAAACAAAGATAG

mRNA sequence

ATGGCGCCTTCCCTCACTGCCTCGAGTGGTTCTGAAAATGCTGCTGCTAGACCACCCTTTTCACCACAAATTTTAAACGGCCTCTCTCTCAAAGAACTCCATTTAGCCGGTGTCGCCCAATCTTCAACAAAGGTTGTTACCCCAATCAAGCTCAGACTATGTAAAGGAAAGAAGGAGGTCTTGCAGGGCATTGCTGCGGGAGTTGATCTCTTTGACTCTGCGTACATATATCATTTAACCCTTGGAGGCTTTGCTCTCACCTTCCCACTTGATGGAATTGTGGAGAAACAGCCAGACGCGCACCTGATAGACAATGCAAGTGACATGACAAAGATTAACTTAAGAGCAATAGTTTTTCGGAAAGATACATCACCAATTCTTGAGGGGTGTAATTGCTATACTTGCCTGAATCATACGAAGGCTTATATAAATCACTTGCTAAATGTCCATGAAATGCTGGCTCAGATACTGCTGGAGATACACAATACTTATCATTATTTAGGATTCTTTCAATCAATCCGAGAAGCAATCAAGGTAGGCAAATTTCAGCAATTTCATCAGAAATTTGTGGAGGAGAGGCGCAATCATCTGACCTTGCCTACATCAGCACTCAGCTCTTGA

Coding sequence (CDS)

ATGGCGCCTTCCCTCACTGCCTCGAGTGGTTCTGAAAATGCTGCTGCTAGACCACCCTTTTCACCACAAATTTTAAACGGCCTCTCTCTCAAAGAACTCCATTTAGCCGGTGTCGCCCAATCTTCAACAAAGGTTGTTACCCCAATCAAGCTCAGACTATGTAAAGGAAAGAAGGAGGTCTTGCAGGGCATTGCTGCGGGAGTTGATCTCTTTGACTCTGCGTACATATATCATTTAACCCTTGGAGGCTTTGCTCTCACCTTCCCACTTGATGGAATTGTGGAGAAACAGCCAGACGCGCACCTGATAGACAATGCAAGTGACATGACAAAGATTAACTTAAGAGCAATAGTTTTTCGGAAAGATACATCACCAATTCTTGAGGGGTGTAATTGCTATACTTGCCTGAATCATACGAAGGCTTATATAAATCACTTGCTAAATGTCCATGAAATGCTGGCTCAGATACTGCTGGAGATACACAATACTTATCATTATTTAGGATTCTTTCAATCAATCCGAGAAGCAATCAAGGTAGGCAAATTTCAGCAATTTCATCAGAAATTTGTGGAGGAGAGGCGCAATCATCTGACCTTGCCTACATCAGCACTCAGCTCTTGA

Protein sequence

MAPSLTASSGSENAAARPPFSPQILNGLSLKELHLAGVAQSSTKVVTPIKLRLCKGKKEVLQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNASDMTKINLRAIVFRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTYHYLGFFQSIREAIKVGKFQQFHQKFVEERRNHLTLPTSALSS*
Homology
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BLAST of Csa2G396220 vs. Swiss-Prot
Match: QTRD1_PONAB (Queuine tRNA-ribosyltransferase subunit QTRTD1 OS=Pongo abelii GN=QTRTD1 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-21
Identity = 59/150 (39.33%), Postives = 85/150 (56.67%), Query Frame = 1 

Query: 59  EVLQGIAAGVDLFDSAYIYHLTLGGFALTF-------PLDGIVEK---QPDAHLIDNASD 118
           EVL+ I  GVDLF+S + Y +T  G ALTF       P + ++++   Q +   +D    
Sbjct: 259 EVLECIERGVDLFESFFPYQVTERGCALTFSFDYQPNPEETLLQQNGTQEEIKCMDQIKK 318

Query: 119 MT-----------KINLRAIVFRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQIL 178
           M            +INL+   +++D +P++ GC+CY C NHT+AYI+HLL  +E+LA +L
Sbjct: 319 METTGCNQEITSFEINLKEKKYQEDFNPLVRGCSCYCCKNHTRAYIHHLLVTNELLAGVL 378

Query: 179 LEIHNTYHYLGFFQSIREAIKVGKFQQFHQ 188
           L +HN  HY GFF  IREA+K  K  Q  +
Sbjct: 379 LMMHNFEHYFGFFHYIREALKSDKLAQLKE 408

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BLAST of Csa2G396220 vs. Swiss-Prot
Match: QTRD1_HUMAN (Queuine tRNA-ribosyltransferase subunit QTRTD1 OS=Homo sapiens GN=QTRTD1 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-21
Identity = 72/206 (34.95%), Postives = 98/206 (47.57%), Query Frame = 1 

Query: 11  SENAAARPPFSPQILNGLSLKELHLAG---VAQSSTKVVTPIKLRLCKGKK---EVLQGI 70
           S    A+ P    +L+G       L     +  S T  +   K RL  G     EVL+ I
Sbjct: 205 SARETAKRPVGGFLLDGFQGNPTTLEARLRLLSSVTAELPEDKPRLISGVSRPDEVLECI 264

Query: 71  AAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDN--------ASDMTK----- 130
             GVDLF+S + Y +T  G ALTF  D   +  P+  L+            D  K     
Sbjct: 265 ERGVDLFESFFPYQVTERGCALTFSFD--YQPNPEETLLQQNGTQEEIKCMDQIKKIETT 324

Query: 131 ----------INLRAIVFRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIH 188
                     INL+   +++D +P++ GC+CY C NHT+AYI+HLL  +E+LA +LL +H
Sbjct: 325 GCNQEITSFEINLKEKKYQEDFNPLVRGCSCYCCKNHTRAYIHHLLVTNELLAGVLLMMH 384

[Close]
BLAST of Csa2G396220 vs. Swiss-Prot
Match: QTRD1_MOUSE (Queuine tRNA-ribosyltransferase subunit QTRTD1 OS=Mus musculus GN=Qtrtd1 PE=1 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-21
Identity = 63/141 (44.68%), Postives = 82/141 (58.16%), Query Frame = 1 

Query: 59  EVLQGIAAGVDLFDSAYIYHLTLGGFALTFPLD-------------GIVEK---QPDAHL 118
           EVL+ I  GVDLF+S + Y +T  G ALTF  D             GI EK      A  
Sbjct: 259 EVLECIERGVDLFESFFPYQVTERGCALTFTFDCQLNPEETLLQQNGIQEKIKGLDQAKK 318

Query: 119 IDNAS---DMT--KINLRAIVFRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQIL 178
           I+      +MT  +INL+   +++D  P++ GC+CY C NHT+AYI+HLL  +E+LA +L
Sbjct: 319 IEATGCNQEMTSFEINLKEKKYQEDFDPLVRGCSCYCCKNHTRAYIHHLLMTNELLAGVL 378

[Close]
BLAST of Csa2G396220 vs. Swiss-Prot
Match: QTRD1_XENLA (Queuine tRNA-ribosyltransferase subunit qtrtd1 OS=Xenopus laevis GN=qtrtd1 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.6e-21
Identity = 63/151 (41.72%), Postives = 83/151 (54.97%), Query Frame = 1 

Query: 59  EVLQGIAAGVDLFDSAYIYHLTLGGFALTF-------PLDGIVEK--------------- 118
           EVL+ I  GVDLFDS + Y +T  G AL F       P   ++EK               
Sbjct: 258 EVLEFIQRGVDLFDSCFPYQVTERGCALIFTHCHRPDPETAVLEKSEMSDTERNGDVGAE 317

Query: 119 --QPDAHLIDNASDMT--KINLRAIVFRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEM 178
             +PDA    + ++MT  +I L+   FR+D  P+LEGC CY C NH++AY++HLL   E+
Sbjct: 318 IEEPDA----DQAEMTPFEICLKEKRFREDFGPLLEGCTCYCCRNHSRAYVHHLLMAKEL 377

Query: 179 LAQILLEIHNTYHYLGFFQSIREAIKVGKFQ 184
           LA ILL IHN  HY  FF SIR A++ G+ +
Sbjct: 378 LAGILLMIHNFQHYFSFFSSIRAALRDGEIK 404

[Close]
BLAST of Csa2G396220 vs. Swiss-Prot
Match: QTRD1_XENTR (Queuine tRNA-ribosyltransferase subunit qtrtd1 OS=Xenopus tropicalis GN=qtrtd1 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.5e-21
Identity = 71/199 (35.68%), Postives = 97/199 (48.74%), Query Frame = 1 

Query: 11  SENAAARPPFSPQILNGL----SLKELHLAGVAQSSTKVVTPIKLRLCKGKKEVLQGIAA 70
           S    A+ P    +L+G     + KEL L     ++     P  +       EVL+ +  
Sbjct: 204 SARETAKRPVGGFLLDGFHGGSAEKELSLISAVTAALPEDKPRFIHGMGRPDEVLECVQR 263

Query: 71  GVDLFDSAYIYHLTLGGFALTF-------PLDGIVEK-----------------QPDAHL 130
           GVDLFDS + Y +T  G AL F       P   ++EK                 +PDA  
Sbjct: 264 GVDLFDSCFPYRVTERGCALIFSHCYRPDPETAVLEKSETSGAERNGDVGAESEEPDADR 323

Query: 131 IDNASDMTKINLRAIVFRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHN 182
            +  S   +I L+   FR+D  P+LEGC+CY C NH++AY++HLL   E+LA ILL IHN
Sbjct: 324 AEMTS--FEICLKEKRFREDFRPLLEGCSCYCCRNHSRAYVHHLLAAKELLAGILLMIHN 383

[Close]
BLAST of Csa2G396220 vs. TrEMBL
Match: A0A0A0LSS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G396220 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 1.7e-112
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1 

Query: 1   MAPSLTASSGSENAAARPPFSPQILNGLSLKELHLAGVAQSSTKVVTPIKLRLCKGKKEV 60
           MAPSLTASSGSENAAARPPFSPQILNGLSLKELHLAGVAQSSTKVVTPIKLRLCKGKKEV
Sbjct: 1   MAPSLTASSGSENAAARPPFSPQILNGLSLKELHLAGVAQSSTKVVTPIKLRLCKGKKEV 60

Query: 61  LQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNASDMTKINLRAIVFR 120
           LQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNASDMTKINLRAIVFR
Sbjct: 61  LQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNASDMTKINLRAIVFR 120

Query: 121 KDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTYHYLGFFQSIREAIKVG 180
           KDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTYHYLGFFQSIREAIKVG
Sbjct: 121 KDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTYHYLGFFQSIREAIKVG 180

Query: 181 KFQQFHQKFVEERRNHLTLPTSALSS 207
           KFQQFHQKFVEERRNHLTLPTSALSS
Sbjct: 181 KFQQFHQKFVEERRNHLTLPTSALSS 206

[Close]
BLAST of Csa2G396220 vs. TrEMBL
Match: V4TY77_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100245821mg PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.8e-54
Identity = 105/140 (75.00%), Postives = 119/140 (85.00%), Query Frame = 1 

Query: 58  KEVLQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNASDMTKINLRAI 117
           +EVLQG+AAGVDLFDSAYIYHLT+GGFALTFPLD + +   +  L D  SD TKINLRA 
Sbjct: 94  EEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRMEKNDYNYQLSDQGSDRTKINLRAT 153

Query: 118 VFRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTYHYLGFFQSIREAI 177
           V+RKD +PI+E C CYTC NHTKAYINHLLNVHEMLAQILLEIHNT+HYLGFF+SIREAI
Sbjct: 154 VYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAI 213

Query: 178 KVGKFQQFHQKFVEERRNHL 198
           K G F+QF +KFV+ RR HL
Sbjct: 214 KEGCFEQFQKKFVQSRREHL 233

[Close]
BLAST of Csa2G396220 vs. TrEMBL
Match: F6HN52_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g06920 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 6.3e-54
Identity = 102/149 (68.46%), Postives = 121/149 (81.21%), Query Frame = 1 

Query: 58  KEVLQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNASDMTKINLRAI 117
           +EVLQG+AAG+DLFDS YIYHLTLGGFALTFPL+ I   + D+ L D  SD TKINLRA 
Sbjct: 274 EEVLQGVAAGIDLFDSTYIYHLTLGGFALTFPLESIQRHEFDSRLSDVGSDHTKINLRAT 333

Query: 118 VFRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTYHYLGFFQSIREAI 177
           ++RKDT+PI++ CNCYTC NHT+AYINHLLNVHEMLAQILLEIHNT+HYLGFF+SIR AI
Sbjct: 334 IYRKDTAPIVDNCNCYTCQNHTRAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIRTAI 393

Query: 178 KVGKFQQFHQKFVEERRNHLTLPTSALSS 207
           K   F+QF Q F++ RR HL +     S+
Sbjct: 394 KEDNFEQFRQTFIDSRREHLNMTAVCASA 422

[Close]
BLAST of Csa2G396220 vs. TrEMBL
Match: A0A067DNK5_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0159811mg PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 8.2e-54
Identity = 105/140 (75.00%), Postives = 118/140 (84.29%), Query Frame = 1 

Query: 58  KEVLQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNASDMTKINLRAI 117
           +EVLQG+AAGVDLFDSAYIYHLT+GGFALTFPLD   +   +  L D  SD TKINLRA 
Sbjct: 73  EEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRAT 132

Query: 118 VFRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTYHYLGFFQSIREAI 177
           V+RKD +PI+E C CYTC NHTKAYINHLLNVHEMLAQILLEIHNT+HYLGFF+SIREAI
Sbjct: 133 VYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAI 192

Query: 178 KVGKFQQFHQKFVEERRNHL 198
           K G F+QF +KFV+ RR HL
Sbjct: 193 KEGCFEQFQKKFVQSRREHL 212

[Close]
BLAST of Csa2G396220 vs. TrEMBL
Match: A0A061FR85_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_036201 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 9.1e-53
Identity = 100/142 (70.42%), Postives = 120/142 (84.51%), Query Frame = 1 

Query: 58  KEVLQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNASDMTKINLRAI 117
           +E+LQG+AAGVDLF+S YIYHLTLGGFALTFPLD +     +    D  SD+ KINLRA 
Sbjct: 251 EEILQGVAAGVDLFESTYIYHLTLGGFALTFPLDSMEINASNLASSDVGSDLRKINLRAT 310

Query: 118 VFRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTYHYLGFFQSIREAI 177
           VFRKDT+PI+EGC CYTC NHT+AYINHLLNVHEMLAQILLEIHNT+H+LGFF+SIREAI
Sbjct: 311 VFRKDTTPIIEGCTCYTCQNHTRAYINHLLNVHEMLAQILLEIHNTHHFLGFFRSIREAI 370

Query: 178 KVGKFQQFHQKFVEERRNHLTL 200
           K G+F++F +KFV+ R +HL +
Sbjct: 371 KAGRFEEFRKKFVQSRCDHLAV 392

[Close]
BLAST of Csa2G396220 vs. NCBI nr
Match: gi|700207942|gb|KGN63061.1| (hypothetical protein Csa_2G396220 [Cucumis sativus])

HSP 1 Score: 413.3 bits (1061), Expect = 2.5e-112
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1 

Query: 1   MAPSLTASSGSENAAARPPFSPQILNGLSLKELHLAGVAQSSTKVVTPIKLRLCKGKKEV 60
           MAPSLTASSGSENAAARPPFSPQILNGLSLKELHLAGVAQSSTKVVTPIKLRLCKGKKEV
Sbjct: 1   MAPSLTASSGSENAAARPPFSPQILNGLSLKELHLAGVAQSSTKVVTPIKLRLCKGKKEV 60

Query: 61  LQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNASDMTKINLRAIVFR 120
           LQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNASDMTKINLRAIVFR
Sbjct: 61  LQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNASDMTKINLRAIVFR 120

Query: 121 KDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTYHYLGFFQSIREAIKVG 180
           KDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTYHYLGFFQSIREAIKVG
Sbjct: 121 KDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTYHYLGFFQSIREAIKVG 180

Query: 181 KFQQFHQKFVEERRNHLTLPTSALSS 207
           KFQQFHQKFVEERRNHLTLPTSALSS
Sbjct: 181 KFQQFHQKFVEERRNHLTLPTSALSS 206

[Close]
BLAST of Csa2G396220 vs. NCBI nr
Match: gi|449441796|ref|XP_004138668.1| (PREDICTED: queuine tRNA-ribosyltransferase subunit qtrtd1-like [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 2.8e-79
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 58  KEVLQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNASDMTKINLRAI 117
           +EVLQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNASDMTKINLRAI
Sbjct: 251 EEVLQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNASDMTKINLRAI 310

Query: 118 VFRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTYHYLGFFQSIREAI 177
           VFRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTYHYLGFFQSIREAI
Sbjct: 311 VFRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTYHYLGFFQSIREAI 370

Query: 178 KVGKFQQFHQKFVEERRNHLTLPTSALSS 207
           KVGKFQQFHQKFVEERRNHLTLPTSALSS
Sbjct: 371 KVGKFQQFHQKFVEERRNHLTLPTSALSS 399

[Close]
BLAST of Csa2G396220 vs. NCBI nr
Match: gi|659081112|ref|XP_008441158.1| (PREDICTED: queuine tRNA-ribosyltransferase subunit qtrtd1-like [Cucumis melo])

HSP 1 Score: 284.6 bits (727), Expect = 1.3e-73
Identity = 137/148 (92.57%), Postives = 143/148 (96.62%), Query Frame = 1 

Query: 58  KEVLQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNASDMTKINLRAI 117
           +E+LQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQP AHLIDNA DMTKINLRA 
Sbjct: 251 EEILQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPAAHLIDNAIDMTKINLRAT 310

Query: 118 VFRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTYHYLGFFQSIREAI 177
           ++RKDTSPILEGC CYTCLNHTKAYINHLLNVHEMLAQILLEIHNT+HYLGFF+SIREAI
Sbjct: 311 IYRKDTSPILEGCTCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAI 370

Query: 178 KVGKFQQFHQKFVEERRNHLTLPTSALS 206
           KVGKFQQFHQKFVEERRNHLTLP SALS
Sbjct: 371 KVGKFQQFHQKFVEERRNHLTLPKSALS 398

[Close]
BLAST of Csa2G396220 vs. NCBI nr
Match: gi|470127854|ref|XP_004299874.1| (PREDICTED: queuine tRNA-ribosyltransferase subunit QTRTD1-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 224.2 bits (570), Expect = 2.1e-55
Identity = 109/164 (66.46%), Postives = 129/164 (78.66%), Query Frame = 1 

Query: 43  TKVVTPIKLRLCKG---KKEVLQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPD 102
           T ++   K RL  G    +EVLQG+AAGVD+FDS YIYHLTLGGFALTFPLDG+      
Sbjct: 233 TDILEEEKPRLVSGLGLPEEVLQGVAAGVDIFDSTYIYHLTLGGFALTFPLDGVETNVSA 292

Query: 103 AHLIDNASDMTKINLRAIVFRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLE 162
            HL +  SD +KINLRA ++RKDT+PI+E CNCYTC NHT+AYINHLLNVHEMLAQILLE
Sbjct: 293 LHLSNIGSDQSKINLRATIYRKDTTPIVENCNCYTCQNHTRAYINHLLNVHEMLAQILLE 352

Query: 163 IHNTYHYLGFFQSIREAIKVGKFQQFHQKFVEERRNHLTLPTSA 204
           IHNT+HYLGFF+S+REAIK G F+QF QKF E +R H+ L + A
Sbjct: 353 IHNTHHYLGFFRSVREAIKSGNFEQFRQKFSEIKRYHMHLASEA 396

[Close]
BLAST of Csa2G396220 vs. NCBI nr
Match: gi|567898256|ref|XP_006441616.1| (hypothetical protein CICLE_v100245821mg, partial [Citrus clementina])

HSP 1 Score: 219.2 bits (557), Expect = 6.9e-54
Identity = 105/140 (75.00%), Postives = 119/140 (85.00%), Query Frame = 1 

Query: 58  KEVLQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNASDMTKINLRAI 117
           +EVLQG+AAGVDLFDSAYIYHLT+GGFALTFPLD + +   +  L D  SD TKINLRA 
Sbjct: 94  EEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRMEKNDYNYQLSDQGSDRTKINLRAT 153

Query: 118 VFRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLEIHNTYHYLGFFQSIREAI 177
           V+RKD +PI+E C CYTC NHTKAYINHLLNVHEMLAQILLEIHNT+HYLGFF+SIREAI
Sbjct: 154 VYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAI 213

Query: 178 KVGKFQQFHQKFVEERRNHL 198
           K G F+QF +KFV+ RR HL
Sbjct: 214 KEGCFEQFQKKFVQSRREHL 233

The following BLAST results are available for this feature:
BLAST of Csa2G396220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
QTRD1_PONAB1.6e-2139.33Queuine tRNA-ribosyltransferase subunit QTRTD1 OS=Pongo abelii GN=QTRTD1 PE=2 SV... [more]
QTRD1_HUMAN1.6e-2134.95Queuine tRNA-ribosyltransferase subunit QTRTD1 OS=Homo sapiens GN=QTRTD1 PE=1 SV... [more]
QTRD1_MOUSE1.6e-2144.68Queuine tRNA-ribosyltransferase subunit QTRTD1 OS=Mus musculus GN=Qtrtd1 PE=1 SV... [more]
QTRD1_XENLA2.6e-2141.72Queuine tRNA-ribosyltransferase subunit qtrtd1 OS=Xenopus laevis GN=qtrtd1 PE=2 ... [more]
QTRD1_XENTR4.5e-2135.68Queuine tRNA-ribosyltransferase subunit qtrtd1 OS=Xenopus tropicalis GN=qtrtd1 P... [more]
BLAST of Csa2G396220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSS8_CUCSA1.7e-112100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G396220 PE=4 SV=1[more]
V4TY77_9ROSI4.8e-5475.00Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100245821mg PE... [more]
F6HN52_VITVI6.3e-5468.46Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g06920 PE=4 SV=... [more]
A0A067DNK5_CITSI8.2e-5475.00Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0159811mg PE=4 ... [more]
A0A061FR85_THECC9.1e-5370.42Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_036201 PE=4 SV=1[more]
BLAST of Csa2G396220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207942|gb|KGN63061.1|2.5e-112100.00hypothetical protein Csa_2G396220 [Cucumis sativus][more]
gi|449441796|ref|XP_004138668.1|2.8e-7999.33PREDICTED: queuine tRNA-ribosyltransferase subunit qtrtd1-like [Cucumis sativus][more]
gi|659081112|ref|XP_008441158.1|1.3e-7392.57PREDICTED: queuine tRNA-ribosyltransferase subunit qtrtd1-like [Cucumis melo][more]
gi|470127854|ref|XP_004299874.1|2.1e-5566.46PREDICTED: queuine tRNA-ribosyltransferase subunit QTRTD1-like [Fragaria vesca s... [more]
gi|567898256|ref|XP_006441616.1|6.9e-5475.00hypothetical protein CICLE_v100245821mg, partial [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002616tRNA_ribo_trans-like
Vocabulary: Biological Process
TermDefinition
GO:0006400tRNA modification
GO:0008616queuosine biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0008479queuine tRNA-ribosyltransferase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008616 queuosine biosynthetic process
biological_process GO:0006400 tRNA modification
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
molecular_function GO:0008479 queuine tRNA-ribosyltransferase activity
molecular_function GO:0046872 metal ion binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU088534cucumber EST collection version 3.0transcribed_cluster
CU139430cucumber EST collection version 3.0transcribed_cluster
CU144950cucumber EST collection version 3.0transcribed_cluster
CU169285cucumber EST collection version 3.0transcribed_cluster
CU177999cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G396220.1Csa2G396220.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU177999CU177999transcribed_cluster
CU139430CU139430transcribed_cluster
CU144950CU144950transcribed_cluster
CU169285CU169285transcribed_cluster
CU088534CU088534transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002616tRNA-guanine(15) transglycosylase-likeGENE3DG3DSA:3.20.20.105coord: 58..193
score: 1.1
IPR002616tRNA-guanine(15) transglycosylase-likePFAMPF01702TGTcoord: 54..189
score: 1.3
IPR002616tRNA-guanine(15) transglycosylase-likeTIGRFAMsTIGR00449TIGR00449coord: 57..194
score: 1.1
IPR002616tRNA-guanine(15) transglycosylase-likeunknownSSF51713tRNA-guanine transglycosylasecoord: 58..191
score: 8.5
NoneNo IPR availablePANTHERPTHR21148PHOSDUCIN-RELATEDcoord: 58..196
score: 1.4
NoneNo IPR availablePANTHERPTHR21148:SF26QUEUINE TRNA-RIBOSYLTRANSFERASE SUBUNIT QTRTD1coord: 58..196
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G396220CSPI02G24560Wild cucumber (PI 183967)cpicuB065
Csa2G396220CsGy2G024320Cucumber (Gy14) v2cgybcuB057
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G396220Melon (DHL92) v3.6.1cumedB112
Csa2G396220Silver-seed gourdcarcuB0018
Csa2G396220Silver-seed gourdcarcuB0747
Csa2G396220Watermelon (97103) v2cuwmbB104
Csa2G396220Watermelon (97103) v2cuwmbB112
Csa2G396220Wax gourdcuwgoB159
Csa2G396220Cucumber (Gy14) v1cgycuB090
Csa2G396220Cucurbita maxima (Rimu)cmacuB277
Csa2G396220Cucurbita maxima (Rimu)cmacuB694
Csa2G396220Cucurbita moschata (Rifu)cmocuB264
Csa2G396220Cucurbita moschata (Rifu)cmocuB684
Csa2G396220Melon (DHL92) v3.5.1cumeB115
Csa2G396220Watermelon (Charleston Gray)cuwcgB097
Csa2G396220Watermelon (97103) v1cuwmB159
Csa2G396220Cucurbita pepo (Zucchini)cpecuB167
Csa2G396220Cucurbita pepo (Zucchini)cpecuB386
Csa2G396220Cucurbita pepo (Zucchini)cpecuB775
Csa2G396220Bottle gourd (USVL1VR-Ls)culsiB101