Csa2G393180 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G393180
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
Description60S ribosomal protein L38; contains IPR002675 (Ribosomal protein L38e)
LocationChr2 : 20263381 .. 20263588 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAAGCAAATCCATGAGATCAAAGATTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGCTCGGTCAAAATCAAGAGGAGGAAAGATGTAGTGAAGTTTAAGGTTCGCTACTCAAGTACCTTTACACGCTCTGTGCCTTGACTCGGAGAAGGCTGAAAAATTGAAGCAGTCTCTTCCCCCAGGTTTGAGTGTGCAAGATCTTTGA

mRNA sequence

ATGCCAAAGCAAATCCATGAGATCAAAGATTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGCTCGGTCAAAATCAAGAGGAGGAAAGATGTAGTGAAGTTTAAGAAGGCTGAAAAATTGAAGCAGTCTCTTCCCCCAGGTTTGAGTGTGCAAGATCTTTGA

Coding sequence (CDS)

ATGCCAAAGCAAATCCATGAGATCAAAGATTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGCTCGGTCAAAATCAAGAGGAGGAAAGATGTAGTGAAGTTTAAGAAGGCTGAAAAATTGAAGCAGTCTCTTCCCCCAGGTTTGAGTGTGCAAGATCTTTGA

Protein sequence

MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFKKAEKLKQSLPPGLSVQDL*
Homology
[Close]
BLAST of Csa2G393180 vs. Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.5e-18
Identity = 50/69 (72.46%), Postives = 50/69 (72.46%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KAEKLKQSL 54
          MPKQIHEIKDFLLTARRKDARSVKIKR KD+VKFK                KA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

[Close]
BLAST of Csa2G393180 vs. Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-16
Identity = 46/69 (66.67%), Postives = 50/69 (72.46%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVV----------------KFKKAEKLKQSL 54
          MPKQIHEIKDFLLTARRKDAR+VKIK+ KD+V                 F+KA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

[Close]
BLAST of Csa2G393180 vs. Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-15
Identity = 45/69 (65.22%), Postives = 49/69 (71.01%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KAEKLKQSL 54
          MPKQIHEIKDFLLTARRKDA+SVKIK+ KD VKFK                KA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

[Close]
BLAST of Csa2G393180 vs. Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-14
Identity = 44/69 (63.77%), Postives = 48/69 (69.57%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KAEKLKQSL 54
          MP++I EIKDFLLTARRKDA+SVKIK+ KD VKFK                KAEKLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

[Close]
BLAST of Csa2G393180 vs. Swiss-Prot
Match: RL38_HUMAN (60S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 3.1e-14
Identity = 43/69 (62.32%), Postives = 48/69 (69.57%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KAEKLKQSL 54
          MP++I EIKDFLLTARRKDA+SVKIK+ KD VKFK                KAEKLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

[Close]
BLAST of Csa2G393180 vs. TrEMBL
Match: A0A0A0LSS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G393180 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.0e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFKKAEKLKQSLPPGLSVQDL 54
          MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFKKAEKLKQSLPPGLSVQDL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFKKAEKLKQSLPPGLSVQDL 53

[Close]
BLAST of Csa2G393180 vs. TrEMBL
Match: A0A103XJ90_CYNCS (Ribosomal protein L38e OS=Cynara cardunculus var. scolymus GN=Ccrd_006297 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-16
Identity = 51/69 (73.91%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KAEKLKQSL 54
          MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                KA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDKDKADKLKQSL 60

[Close]
BLAST of Csa2G393180 vs. TrEMBL
Match: A0A0A0KBT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G081500 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-16
Identity = 51/69 (73.91%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KAEKLKQSL 54
          MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                KA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

[Close]
BLAST of Csa2G393180 vs. TrEMBL
Match: A0A068U8M1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018662001 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-16
Identity = 51/69 (73.91%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KAEKLKQSL 54
           MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                KA+KLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

[Close]
BLAST of Csa2G393180 vs. TrEMBL
Match: I3SRE3_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-16
Identity = 51/69 (73.91%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KAEKLKQSL 54
          MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                KA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDTEKADKLKQSL 60

[Close]
BLAST of Csa2G393180 vs. TAIR10
Match: AT2G43460.1 (AT2G43460.1 Ribosomal L38e protein family)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-19
Identity = 50/69 (72.46%), Postives = 50/69 (72.46%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KAEKLKQSL 54
          MPKQIHEIKDFLLTARRKDARSVKIKR KD+VKFK                KA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

[Close]
BLAST of Csa2G393180 vs. TAIR10
Match: AT3G59540.1 (AT3G59540.1 Ribosomal L38e protein family)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-19
Identity = 50/69 (72.46%), Postives = 50/69 (72.46%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KAEKLKQSL 54
          MPKQIHEIKDFLLTARRKDARSVKIKR KD+VKFK                KA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

[Close]
BLAST of Csa2G393180 vs. NCBI nr
Match: gi|700207932|gb|KGN63051.1| (hypothetical protein Csa_2G393180 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFKKAEKLKQSLPPGLSVQDL 54
          MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFKKAEKLKQSLPPGLSVQDL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFKKAEKLKQSLPPGLSVQDL 53

[Close]
BLAST of Csa2G393180 vs. NCBI nr
Match: gi|976903921|gb|KVH91673.1| (Ribosomal protein L38e [Cynara cardunculus var. scolymus])

HSP 1 Score: 91.7 bits (226), Expect = 4.3e-16
Identity = 51/69 (73.91%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KAEKLKQSL 54
          MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                KA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDKDKADKLKQSL 60

[Close]
BLAST of Csa2G393180 vs. NCBI nr
Match: gi|629123314|gb|KCW87739.1| (hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis])

HSP 1 Score: 91.7 bits (226), Expect = 4.3e-16
Identity = 51/69 (73.91%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KAEKLKQSL 54
           MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                KA+KLKQSL
Sbjct: 32  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 91

[Close]
BLAST of Csa2G393180 vs. NCBI nr
Match: gi|902189617|gb|KNA11420.1| (hypothetical protein SOVF_135380 [Spinacia oleracea])

HSP 1 Score: 91.7 bits (226), Expect = 4.3e-16
Identity = 51/69 (73.91%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KAEKLKQSL 54
          MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                KA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60

[Close]
BLAST of Csa2G393180 vs. NCBI nr
Match: gi|297735234|emb|CBI17596.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 91.7 bits (226), Expect = 4.3e-16
Identity = 51/69 (73.91%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KAEKLKQSL 54
           MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                KA+KLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

The following BLAST results are available for this feature:
BLAST of Csa2G393180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL38_ARATH3.5e-1872.4660S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1[more]
RL38_SOLLC3.3e-1666.6760S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1[more]
RL38_BRABE1.3e-1565.2260S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1[more]
RL38_MOUSE1.1e-1463.7760S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3[more]
RL38_HUMAN3.1e-1462.3260S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2[more]
BLAST of Csa2G393180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSS2_CUCSA2.0e-20100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G393180 PE=3 SV=1[more]
A0A103XJ90_CYNCS3.0e-1673.91Ribosomal protein L38e OS=Cynara cardunculus var. scolymus GN=Ccrd_006297 PE=3 S... [more]
A0A0A0KBT2_CUCSA3.0e-1673.91Uncharacterized protein OS=Cucumis sativus GN=Csa_6G081500 PE=3 SV=1[more]
A0A068U8M1_COFCA3.0e-1673.91Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018662001 PE=3 SV=1[more]
I3SRE3_LOTJA3.0e-1673.91Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
BLAST of Csa2G393180 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G43460.12.0e-1972.46 Ribosomal L38e protein family[more]
AT3G59540.12.0e-1972.46 Ribosomal L38e protein family[more]
BLAST of Csa2G393180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207932|gb|KGN63051.1|2.9e-20100.00hypothetical protein Csa_2G393180 [Cucumis sativus][more]
gi|976903921|gb|KVH91673.1|4.3e-1673.91Ribosomal protein L38e [Cynara cardunculus var. scolymus][more]
gi|629123314|gb|KCW87739.1|4.3e-1673.91hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis][more]
gi|902189617|gb|KNA11420.1|4.3e-1673.91hypothetical protein SOVF_135380 [Spinacia oleracea][more]
gi|297735234|emb|CBI17596.3|4.3e-1673.91unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002675Ribosomal_L38e
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G393180.1Csa2G393180.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002675Ribosomal protein L38ePRODOMPD010361coord: 1..53
score: 2.0
IPR002675Ribosomal protein L38ePANTHERPTHR1096560S RIBOSOMAL PROTEIN L38coord: 2..53
score: 2.1
IPR002675Ribosomal protein L38ePFAMPF01781Ribosomal_L38ecoord: 2..35
score: 6.9
NoneNo IPR availablePANTHERPTHR10965:SF3SUBFAMILY NOT NAMEDcoord: 2..53
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G393180CSPI02G24440Wild cucumber (PI 183967)cpicuB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G393180Silver-seed gourdcarcuB0018
Csa2G393180Watermelon (97103) v2cuwmbB112
Csa2G393180Wax gourdcuwgoB159
Csa2G393180Cucurbita maxima (Rimu)cmacuB694
Csa2G393180Cucurbita moschata (Rifu)cmocuB684
Csa2G393180Melon (DHL92) v3.5.1cumeB115
Csa2G393180Watermelon (Charleston Gray)cuwcgB097
Csa2G393180Watermelon (97103) v1cuwmB159
Csa2G393180Cucurbita pepo (Zucchini)cpecuB386
Csa2G393180Cucurbita pepo (Zucchini)cpecuB775
Csa2G393180Bottle gourd (USVL1VR-Ls)culsiB101
Csa2G393180Cucumber (Gy14) v2cgybcuB057
Csa2G393180Melon (DHL92) v3.6.1cumedB112