Csa2G383400 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G383400
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 20019031 .. 20019297 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGGCTTCAAAAGTGGCAGAGTTGTCTTCCACCCGCTTGAGCATCAACAGCTTCTGGGCGCTTTTCCTTATCACTGGAGTTGCTTCCCTATGTTCTGTGGCTTTTTACGTCGGCAAATTTCTGTACGACGAACGGAGGCGGTGGCAAAACGTAGAGTCCCCAATCGGGGAAAGATTATACAAGTTGGCCAAGGAGTTCGTGAAGAGAGATCAGAGAGCTCACCCGCTGAGACGAAGGATATCCATAAATGGGGTTCCTTTTAA

mRNA sequence

ATGTACGGCTTCAAAAGTGGCAGAGTTGTCTTCCACCCGCTTGAGCATCAACAGCTTCTGGGCGCTTTTCCTTATCACTGGAGTTGCTTCCCTATGTTCTGTGGCTTTTTACGTCGGCAAATTTCTGTACGACGAACGGAGGCGGTGGCAAAACGTAGAGTCCCCAATCGGGGAAAGATTATACAAGTTGGCCAAGGAGTTCGTGAAGAGAGATCAGAGAGCTCACCCGCTGAGACGAAGGATATCCATAAATGGGGTTCCTTTTAA

Coding sequence (CDS)

ATGTACGGCTTCAAAAGTGGCAGAGTTGTCTTCCACCCGCTTGAGCATCAACAGCTTCTGGGCGCTTTTCCTTATCACTGGAGTTGCTTCCCTATGTTCTGTGGCTTTTTACGTCGGCAAATTTCTGTACGACGAACGGAGGCGGTGGCAAAACGTAGAGTCCCCAATCGGGGAAAGATTATACAAGTTGGCCAAGGAGTTCGTGAAGAGAGATCAGAGAGCTCACCCGCTGAGACGAAGGATATCCATAAATGGGGTTCCTTTTAA

Protein sequence

MYGFKSGRVVFHPLEHQQLLGAFPYHWSCFPMFCGFLRRQISVRRTEAVAKRRVPNRGKIIQVGQGVREERSESSPAETKDIHKWGSF*

Homology

[Close]

BLAST of Csa2G383400 vs. TrEMBL
Match: A0A0A0LML3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G383400 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 3.9e-45
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 1  MYGFKSGRVVFHPLEHQQLLGAFPYHWSCFPMFCGFLRRQISVRRTEAVAKRRVPNRGKI 60
          MYGFKSGRVVFHPLEHQQLLGAFPYHWSCFPMFCGFLRRQISVRRTEAVAKRRVPNRGKI
Sbjct: 1  MYGFKSGRVVFHPLEHQQLLGAFPYHWSCFPMFCGFLRRQISVRRTEAVAKRRVPNRGKI 60

Query: 61 IQVGQGVREERSESSPAETKDIHKWGSF 89
          IQVGQGVREERSESSPAETKDIHKWGSF
Sbjct: 61 IQVGQGVREERSESSPAETKDIHKWGSF 88

[Close]

BLAST of Csa2G383400 vs. NCBI nr
Match: gi|700207899|gb|KGN63018.1| (hypothetical protein Csa_2G383400 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 5.6e-45
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 1  MYGFKSGRVVFHPLEHQQLLGAFPYHWSCFPMFCGFLRRQISVRRTEAVAKRRVPNRGKI 60
          MYGFKSGRVVFHPLEHQQLLGAFPYHWSCFPMFCGFLRRQISVRRTEAVAKRRVPNRGKI
Sbjct: 1  MYGFKSGRVVFHPLEHQQLLGAFPYHWSCFPMFCGFLRRQISVRRTEAVAKRRVPNRGKI 60

Query: 61 IQVGQGVREERSESSPAETKDIHKWGSF 89
          IQVGQGVREERSESSPAETKDIHKWGSF
Sbjct: 61 IQVGQGVREERSESSPAETKDIHKWGSF 88

The following BLAST results are available for this feature:

BLAST of Csa2G383400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LML3_CUCSA	3.9e-45	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G383400 PE=4 SV=1	[more]

BLAST of Csa2G383400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207899\|gb\|KGN63018.1\|	5.6e-45	100.00	hypothetical protein Csa_2G383400 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G383400.1	Csa2G383400.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G383400	Cucumber (Gy14) v1	cgycuB233
Csa2G383400	Cucumber (Gy14) v2	cgybcuB057